EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSVVUG00000009254 (Gene tree)
Gene ID
-
Gene Symbol
LSM6
Alias
YDR378C
Full Name
LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Vulpes_vulpes
Status
putative
Strand
Plus strand
Length
47074 bases
Position
chrNBDQ01000148.1:1647343-1694416
Accession
17017
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSVVUP00000012623LSMPF01423.224.4e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSVVUT00000016479LSM6-201543-ENSVVUP00000012623117 (aa)--
Gene Model
Click here to download ENSVVUG00000009254's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000009254's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSVVUG00000009254LSM65746.269ENSVVUG00000023821-8646.269
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSVVUG00000009254LSM668100.000ENSG00000164167LSM6100100.000Homo_sapiens
ENSVVUG00000009254LSM66895.000ENSAPOG00000019832lsm610095.000Acanthochromis_polyacanthus
ENSVVUG00000009254LSM668100.000ENSAMEG00000016671LSM6100100.000Ailuropoda_melanoleuca
ENSVVUG00000009254LSM66895.000ENSACIG00000016711lsm610095.000Amphilophus_citrinellus
ENSVVUG00000009254LSM67095.122ENSAOCG00000002110lsm65395.122Amphiprion_ocellaris
ENSVVUG00000009254LSM66895.000ENSAPEG00000023992lsm610095.000Amphiprion_percula
ENSVVUG00000009254LSM66895.000ENSATEG00000012610lsm610095.000Anabas_testudineus
ENSVVUG00000009254LSM666100.000ENSAPLG00000012594LSM699100.000Anas_platyrhynchos
ENSVVUG00000009254LSM668100.000ENSACAG00000004004LSM6100100.000Anolis_carolinensis
ENSVVUG00000009254LSM668100.000ENSANAG00000030568-100100.000Aotus_nancymaae
ENSVVUG00000009254LSM66886.250ENSANAG00000021839-10086.250Aotus_nancymaae
ENSVVUG00000009254LSM66895.000ENSACLG00000025621lsm610095.000Astatotilapia_calliptera
ENSVVUG00000009254LSM67195.181ENSAMXG00000038738lsm610096.250Astyanax_mexicanus
ENSVVUG00000009254LSM68389.691ENSBTAG00000014060LSM6100100.000Bos_taurus
ENSVVUG00000009254LSM66893.750ENSBTAG00000052085-10093.750Bos_taurus
ENSVVUG00000009254LSM66481.333WBGene00003080lsm-69781.333Caenorhabditis_elegans
ENSVVUG00000009254LSM668100.000ENSCJAG00000002482LSM6100100.000Callithrix_jacchus
ENSVVUG00000009254LSM668100.000ENSCAFG00000007738LSM6100100.000Canis_familiaris
ENSVVUG00000009254LSM668100.000ENSCAFG00020025902LSM6100100.000Canis_lupus_dingo
ENSVVUG00000009254LSM661100.000ENSCHIG00000012864-100100.000Capra_hircus
ENSVVUG00000009254LSM67184.337ENSCHIG00000024198-9984.337Capra_hircus
ENSVVUG00000009254LSM668100.000ENSCHIG00000010334-100100.000Capra_hircus
ENSVVUG00000009254LSM66484.000ENSTSYG00000012759-8984.000Carlito_syrichta
ENSVVUG00000009254LSM668100.000ENSTSYG00000026972LSM6100100.000Carlito_syrichta
ENSVVUG00000009254LSM65696.923ENSCAPG00000011179-10096.923Cavia_aperea
ENSVVUG00000009254LSM668100.000ENSCAPG00000008104LSM6100100.000Cavia_aperea
ENSVVUG00000009254LSM668100.000ENSCPOG00000032655LSM6100100.000Cavia_porcellus
ENSVVUG00000009254LSM66898.734ENSCCAG00000020665-9998.734Cebus_capucinus
ENSVVUG00000009254LSM668100.000ENSCCAG00000036437LSM6100100.000Cebus_capucinus
ENSVVUG00000009254LSM668100.000ENSCATG00000002770-100100.000Cercocebus_atys
ENSVVUG00000009254LSM66872.500ENSCATG00000038799-10072.500Cercocebus_atys
ENSVVUG00000009254LSM668100.000ENSCLAG00000005495LSM6100100.000Chinchilla_lanigera
ENSVVUG00000009254LSM66180.282ENSCLAG00000005685-10080.282Chinchilla_lanigera
ENSVVUG00000009254LSM668100.000ENSCSAG00000003421LSM6100100.000Chlorocebus_sabaeus
ENSVVUG00000009254LSM66878.750ENSCHOG00000003420LSM610078.750Choloepus_hoffmanni
ENSVVUG00000009254LSM67396.471ENSCPBG00000027472LSM68996.471Chrysemys_picta_bellii
ENSVVUG00000009254LSM66596.053ENSCING00000019152-9396.053Ciona_intestinalis
ENSVVUG00000009254LSM66597.368ENSCSAVG00000002065-9397.368Ciona_savignyi
ENSVVUG00000009254LSM668100.000ENSCANG00000006849-100100.000Colobus_angolensis_palliatus
ENSVVUG00000009254LSM66871.250ENSCANG00000035214-10071.250Colobus_angolensis_palliatus
ENSVVUG00000009254LSM668100.000ENSCANG00000041263-100100.000Colobus_angolensis_palliatus
ENSVVUG00000009254LSM668100.000ENSCGRG00001017142Lsm6100100.000Cricetulus_griseus_chok1gshd
ENSVVUG00000009254LSM668100.000ENSCGRG00000008320Lsm6100100.000Cricetulus_griseus_crigri
ENSVVUG00000009254LSM67192.771ENSCSEG00000000423lsm610095.000Cynoglossus_semilaevis
ENSVVUG00000009254LSM66895.000ENSCVAG00000001592lsm610095.000Cyprinodon_variegatus
ENSVVUG00000009254LSM66896.250ENSDARG00000036995lsm610096.250Danio_rerio
ENSVVUG00000009254LSM66898.750ENSDNOG00000044848-10098.750Dasypus_novemcinctus
ENSVVUG00000009254LSM66790.000ENSDNOG00000040186-8690.000Dasypus_novemcinctus
ENSVVUG00000009254LSM668100.000ENSDORG00000000933Lsm6100100.000Dipodomys_ordii
ENSVVUG00000009254LSM66685.714FBgn0034564CG93449785.714Drosophila_melanogaster
ENSVVUG00000009254LSM66898.750ENSEBUG00000017073lsm610098.750Eptatretus_burgeri
ENSVVUG00000009254LSM659100.000ENSEASG00005001533LSM672100.000Equus_asinus_asinus
ENSVVUG00000009254LSM668100.000ENSECAG00000021036LSM6100100.000Equus_caballus
ENSVVUG00000009254LSM66872.152ENSEEUG00000002101LSM610072.152Erinaceus_europaeus
ENSVVUG00000009254LSM66896.250ENSELUG00000014301LSM610096.250Esox_lucius
ENSVVUG00000009254LSM668100.000ENSFCAG00000003047LSM6100100.000Felis_catus
ENSVVUG00000009254LSM67098.780ENSFALG00000005509LSM69498.780Ficedula_albicollis
ENSVVUG00000009254LSM668100.000ENSFDAG00000020913-100100.000Fukomys_damarensis
ENSVVUG00000009254LSM66887.500ENSFDAG00000019073-10087.500Fukomys_damarensis
ENSVVUG00000009254LSM66895.000ENSFHEG00000007948lsm610095.000Fundulus_heteroclitus
ENSVVUG00000009254LSM66895.000ENSGMOG00000015550lsm610095.000Gadus_morhua
ENSVVUG00000009254LSM668100.000ENSGALG00000009985LSM6100100.000Gallus_gallus
ENSVVUG00000009254LSM66895.000ENSGAFG00000017763lsm610095.000Gambusia_affinis
ENSVVUG00000009254LSM66896.203ENSGACG00000017223lsm69996.203Gasterosteus_aculeatus
ENSVVUG00000009254LSM668100.000ENSGAGG00000020980LSM6100100.000Gopherus_agassizii
ENSVVUG00000009254LSM668100.000ENSGGOG00000001310LSM6100100.000Gorilla_gorilla
ENSVVUG00000009254LSM66895.000ENSHBUG00000008618lsm610095.000Haplochromis_burtoni
ENSVVUG00000009254LSM668100.000ENSHGLG00000000205LSM6100100.000Heterocephalus_glaber_female
ENSVVUG00000009254LSM668100.000ENSHGLG00100014341LSM6100100.000Heterocephalus_glaber_male
ENSVVUG00000009254LSM66895.000ENSHCOG00000005591lsm610095.000Hippocampus_comes
ENSVVUG00000009254LSM66895.000ENSIPUG00000004508lsm610095.000Ictalurus_punctatus
ENSVVUG00000009254LSM668100.000ENSSTOG00000002678LSM6100100.000Ictidomys_tridecemlineatus
ENSVVUG00000009254LSM668100.000ENSJJAG00000013845-100100.000Jaculus_jaculus
ENSVVUG00000009254LSM66679.221ENSJJAG00000016942-9779.221Jaculus_jaculus
ENSVVUG00000009254LSM66890.000ENSJJAG00000011211-10090.000Jaculus_jaculus
ENSVVUG00000009254LSM66895.000ENSKMAG00000004105lsm610095.000Kryptolebias_marmoratus
ENSVVUG00000009254LSM66895.000ENSLBEG00000018441lsm610095.000Labrus_bergylta
ENSVVUG00000009254LSM668100.000ENSLACG00000006937LSM6100100.000Latimeria_chalumnae
ENSVVUG00000009254LSM66896.250ENSLOCG00000008852lsm610096.250Lepisosteus_oculatus
ENSVVUG00000009254LSM66895.000ENSLOCG00000017683-10095.000Lepisosteus_oculatus
ENSVVUG00000009254LSM668100.000ENSLAFG00000001952LSM6100100.000Loxodonta_africana
ENSVVUG00000009254LSM668100.000ENSMFAG00000033073LSM6100100.000Macaca_fascicularis
ENSVVUG00000009254LSM66873.750ENSMNEG00000040412-10073.750Macaca_nemestrina
ENSVVUG00000009254LSM668100.000ENSMNEG00000034820-100100.000Macaca_nemestrina
ENSVVUG00000009254LSM668100.000ENSMLEG00000035153LSM6100100.000Mandrillus_leucophaeus
ENSVVUG00000009254LSM66895.000ENSMAMG00000014029lsm610095.000Mastacembelus_armatus
ENSVVUG00000009254LSM66895.000ENSMZEG00005009146lsm610095.000Maylandia_zebra
ENSVVUG00000009254LSM668100.000ENSMGAG00000003802LSM6100100.000Meleagris_gallopavo
ENSVVUG00000009254LSM668100.000ENSMAUG00000014938Lsm6100100.000Mesocricetus_auratus
ENSVVUG00000009254LSM668100.000ENSMICG00000042599LSM6100100.000Microcebus_murinus
ENSVVUG00000009254LSM66791.026ENSMICG00000047411-9291.026Microcebus_murinus
ENSVVUG00000009254LSM668100.000ENSMOCG00000020049Lsm6100100.000Microtus_ochrogaster
ENSVVUG00000009254LSM66888.750ENSMMOG00000007379-10088.750Mola_mola
ENSVVUG00000009254LSM66895.000ENSMMOG00000005470lsm610095.000Mola_mola
ENSVVUG00000009254LSM668100.000ENSMODG00000000526LSM6100100.000Monodelphis_domestica
ENSVVUG00000009254LSM66895.000ENSMALG00000002419lsm610095.000Monopterus_albus
ENSVVUG00000009254LSM668100.000MGP_CAROLIEiJ_G0031245Lsm6100100.000Mus_caroli
ENSVVUG00000009254LSM668100.000ENSMUSG00000031683Lsm6100100.000Mus_musculus
ENSVVUG00000009254LSM668100.000MGP_PahariEiJ_G0022851Lsm6100100.000Mus_pahari
ENSVVUG00000009254LSM668100.000MGP_SPRETEiJ_G0032365Lsm6100100.000Mus_spretus
ENSVVUG00000009254LSM674100.000ENSMPUG00000006936LSM6100100.000Mustela_putorius_furo
ENSVVUG00000009254LSM668100.000ENSMLUG00000026355LSM6100100.000Myotis_lucifugus
ENSVVUG00000009254LSM668100.000ENSNGAG00000019116Lsm6100100.000Nannospalax_galili
ENSVVUG00000009254LSM66895.000ENSNBRG00000004887lsm610095.000Neolamprologus_brichardi
ENSVVUG00000009254LSM668100.000ENSNLEG00000005584LSM6100100.000Nomascus_leucogenys
ENSVVUG00000009254LSM66898.750ENSOPRG00000011199LSM610098.750Ochotona_princeps
ENSVVUG00000009254LSM66897.500ENSODEG00000020420-10097.500Octodon_degus
ENSVVUG00000009254LSM66896.250ENSODEG00000019419-10096.250Octodon_degus
ENSVVUG00000009254LSM66688.312ENSODEG00000018684-10088.312Octodon_degus
ENSVVUG00000009254LSM66898.750ENSODEG00000002307-10098.750Octodon_degus
ENSVVUG00000009254LSM66895.000ENSONIG00000010005lsm610095.000Oreochromis_niloticus
ENSVVUG00000009254LSM66774.359ENSOANG00000006894-10074.359Ornithorhynchus_anatinus
ENSVVUG00000009254LSM66774.359ENSOANG00000006895-10074.359Ornithorhynchus_anatinus
ENSVVUG00000009254LSM66893.750ENSORLG00000024158lsm610093.750Oryzias_latipes
ENSVVUG00000009254LSM66893.750ENSORLG00020017383lsm610093.750Oryzias_latipes_hni
ENSVVUG00000009254LSM66893.750ENSORLG00015016903lsm610093.750Oryzias_latipes_hsok
ENSVVUG00000009254LSM66895.000ENSOMEG00000000074lsm610095.000Oryzias_melastigma
ENSVVUG00000009254LSM668100.000ENSOGAG00000033153-100100.000Otolemur_garnettii
ENSVVUG00000009254LSM668100.000ENSOGAG00000026665-100100.000Otolemur_garnettii
ENSVVUG00000009254LSM659100.000ENSOARG00000008509-88100.000Ovis_aries
ENSVVUG00000009254LSM67493.023ENSOARG00000011641-10093.023Ovis_aries
ENSVVUG00000009254LSM668100.000ENSPPAG00000037929LSM6100100.000Pan_paniscus
ENSVVUG00000009254LSM668100.000ENSPPRG00000012806LSM6100100.000Panthera_pardus
ENSVVUG00000009254LSM668100.000ENSPTIG00000019769LSM6100100.000Panthera_tigris_altaica
ENSVVUG00000009254LSM668100.000ENSPTRG00000016488LSM6100100.000Pan_troglodytes
ENSVVUG00000009254LSM668100.000ENSPANG00000006552LSM6100100.000Papio_anubis
ENSVVUG00000009254LSM66896.250ENSPKIG00000016176lsm610096.250Paramormyrops_kingsleyae
ENSVVUG00000009254LSM668100.000ENSPSIG00000016942LSM6100100.000Pelodiscus_sinensis
ENSVVUG00000009254LSM66895.000ENSPMGG00000018004lsm610095.000Periophthalmus_magnuspinnatus
ENSVVUG00000009254LSM668100.000ENSPEMG00000012410Lsm6100100.000Peromyscus_maniculatus_bairdii
ENSVVUG00000009254LSM66898.750ENSPMAG00000006949lsm610098.750Petromyzon_marinus
ENSVVUG00000009254LSM67496.512ENSPCIG00000023469LSM680100.000Phascolarctos_cinereus
ENSVVUG00000009254LSM66895.000ENSPFOG00000008881lsm610095.000Poecilia_formosa
ENSVVUG00000009254LSM66895.000ENSPLAG00000003202lsm610095.000Poecilia_latipinna
ENSVVUG00000009254LSM66895.000ENSPMEG00000004000lsm610095.000Poecilia_mexicana
ENSVVUG00000009254LSM66895.000ENSPREG00000023235lsm610095.000Poecilia_reticulata
ENSVVUG00000009254LSM668100.000ENSPPYG00000015105LSM6100100.000Pongo_abelii
ENSVVUG00000009254LSM668100.000ENSPCOG00000013899LSM6100100.000Propithecus_coquereli
ENSVVUG00000009254LSM66895.000ENSPNYG00000012614lsm610095.000Pundamilia_nyererei
ENSVVUG00000009254LSM66896.250ENSPNAG00000018779lsm610096.250Pygocentrus_nattereri
ENSVVUG00000009254LSM668100.000ENSRNOG00000030374Lsm6100100.000Rattus_norvegicus
ENSVVUG00000009254LSM668100.000ENSRNOG00000049370LOC100360750100100.000Rattus_norvegicus
ENSVVUG00000009254LSM668100.000ENSRBIG00000027878LSM6100100.000Rhinopithecus_bieti
ENSVVUG00000009254LSM668100.000ENSRROG00000024868LSM6100100.000Rhinopithecus_roxellana
ENSVVUG00000009254LSM66741.463YDR378C-9545.122Saccharomyces_cerevisiae
ENSVVUG00000009254LSM66873.750ENSSBOG00000028103-10073.750Saimiri_boliviensis_boliviensis
ENSVVUG00000009254LSM668100.000ENSSBOG00000021229-100100.000Saimiri_boliviensis_boliviensis
ENSVVUG00000009254LSM66896.250ENSSFOG00015016480lsm610096.250Scleropages_formosus
ENSVVUG00000009254LSM66895.000ENSSMAG00000004550lsm610095.000Scophthalmus_maximus
ENSVVUG00000009254LSM67095.122ENSSDUG00000020459lsm65195.122Seriola_dumerili
ENSVVUG00000009254LSM65997.101ENSSLDG00000004136-5997.101Seriola_lalandi_dorsalis
ENSVVUG00000009254LSM67095.122ENSSLDG00000020533lsm68595.122Seriola_lalandi_dorsalis
ENSVVUG00000009254LSM668100.000ENSSPUG00000008657LSM6100100.000Sphenodon_punctatus
ENSVVUG00000009254LSM66895.000ENSSPAG00000003246lsm610095.000Stegastes_partitus
ENSVVUG00000009254LSM668100.000ENSSSCG00000035973LSM6100100.000Sus_scrofa
ENSVVUG00000009254LSM668100.000ENSTGUG00000002663LSM6100100.000Taeniopygia_guttata
ENSVVUG00000009254LSM66895.000ENSTRUG00000023398lsm610095.000Takifugu_rubripes
ENSVVUG00000009254LSM66895.000ENSTNIG00000017725lsm610095.000Tetraodon_nigroviridis
ENSVVUG00000009254LSM668100.000ENSTTRG00000004609LSM6100100.000Tursiops_truncatus
ENSVVUG00000009254LSM66791.026ENSUAMG00000014213LSM66491.026Ursus_americanus
ENSVVUG00000009254LSM66791.026ENSUMAG00000015727LSM66491.026Ursus_maritimus
ENSVVUG00000009254LSM668100.000ENSVPAG00000006922LSM6100100.000Vicugna_pacos
ENSVVUG00000009254LSM668100.000ENSXETG00000023683lsm6100100.000Xenopus_tropicalis
ENSVVUG00000009254LSM66895.000ENSXMAG00000009606lsm610095.000Xiphophorus_maculatus

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