EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000010085 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 37255 bases
Position: chrNBDQ01000001.1:49000164-49037418
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000013761	TruB_N	PF01509.18	2.1e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000018032	TRUB1-201	1883	-	ENSVVUP00000013761	415 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000010085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000010085's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000010085	TRUB1	83	91.404	ENSG00000165832	TRUB1	99	91.117	Homo_sapiens
ENSVVUG00000010085	TRUB1	59	68.980	ENSAPOG00000020565	trub1	89	68.699	Acanthochromis_polyacanthus
ENSVVUG00000010085	TRUB1	83	95.157	ENSAMEG00000014931	TRUB1	99	95.157	Ailuropoda_melanoleuca
ENSVVUG00000010085	TRUB1	59	63.415	ENSACIG00000003060	trub1	82	63.415	Amphilophus_citrinellus
ENSVVUG00000010085	TRUB1	59	68.980	ENSAOCG00000017188	trub1	89	68.699	Amphiprion_ocellaris
ENSVVUG00000010085	TRUB1	59	68.293	ENSAPEG00000015209	trub1	89	68.293	Amphiprion_percula
ENSVVUG00000010085	TRUB1	58	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSVVUG00000010085	TRUB1	66	76.838	ENSAPLG00000006808	TRUB1	99	76.364	Anas_platyrhynchos
ENSVVUG00000010085	TRUB1	65	72.119	ENSACAG00000009282	TRUB1	97	72.119	Anolis_carolinensis
ENSVVUG00000010085	TRUB1	80	94.012	ENSANAG00000022870	TRUB1	99	92.264	Aotus_nancymaae
ENSVVUG00000010085	TRUB1	61	67.460	ENSACLG00000000823	trub1	91	67.460	Astatotilapia_calliptera
ENSVVUG00000010085	TRUB1	65	65.926	ENSAMXG00000015845	trub1	90	65.926	Astyanax_mexicanus
ENSVVUG00000010085	TRUB1	82	92.690	ENSBTAG00000012955	TRUB1	99	91.168	Bos_taurus
ENSVVUG00000010085	TRUB1	83	92.000	ENSCJAG00000047815	TRUB1	99	92.286	Callithrix_jacchus
ENSVVUG00000010085	TRUB1	84	98.857	ENSCAFG00000011688	TRUB1	100	98.857	Canis_familiaris
ENSVVUG00000010085	TRUB1	84	98.857	ENSCAFG00020013237	TRUB1	100	98.857	Canis_lupus_dingo
ENSVVUG00000010085	TRUB1	73	96.678	ENSCHIG00000020884	TRUB1	99	91.143	Capra_hircus
ENSVVUG00000010085	TRUB1	83	91.429	ENSTSYG00000000446	TRUB1	99	90.571	Carlito_syrichta
ENSVVUG00000010085	TRUB1	61	85.771	ENSCAPG00000017088	TRUB1	99	85.771	Cavia_aperea
ENSVVUG00000010085	TRUB1	59	80.408	ENSCPOG00000030129	-	76	93.333	Cavia_porcellus
ENSVVUG00000010085	TRUB1	58	83.265	ENSCPOG00000040236	-	100	83.265	Cavia_porcellus
ENSVVUG00000010085	TRUB1	73	96.346	ENSCCAG00000028842	TRUB1	99	91.429	Cebus_capucinus
ENSVVUG00000010085	TRUB1	83	91.977	ENSCATG00000033431	TRUB1	99	92.264	Cercocebus_atys
ENSVVUG00000010085	TRUB1	58	86.939	ENSCLAG00000008664	TRUB1	100	85.714	Chinchilla_lanigera
ENSVVUG00000010085	TRUB1	83	92.264	ENSCSAG00000004891	TRUB1	99	92.550	Chlorocebus_sabaeus
ENSVVUG00000010085	TRUB1	84	76.000	ENSCHOG00000011931	TRUB1	100	76.571	Choloepus_hoffmanni
ENSVVUG00000010085	TRUB1	66	80.147	ENSCPBG00000003051	TRUB1	94	80.147	Chrysemys_picta_bellii
ENSVVUG00000010085	TRUB1	83	92.264	ENSCANG00000029445	TRUB1	99	92.550	Colobus_angolensis_palliatus
ENSVVUG00000010085	TRUB1	61	88.189	ENSCGRG00001016772	-	90	80.068	Cricetulus_griseus_chok1gshd
ENSVVUG00000010085	TRUB1	67	80.357	ENSCGRG00001010322	-	79	80.272	Cricetulus_griseus_chok1gshd
ENSVVUG00000010085	TRUB1	67	89.286	ENSCGRG00000010806	Trub1	91	88.851	Cricetulus_griseus_crigri
ENSVVUG00000010085	TRUB1	59	64.898	ENSCSEG00000011261	trub1	94	58.966	Cynoglossus_semilaevis
ENSVVUG00000010085	TRUB1	59	68.163	ENSCVAG00000008791	trub1	75	68.163	Cyprinodon_variegatus
ENSVVUG00000010085	TRUB1	67	64.286	ENSDARG00000053805	trub1	93	64.286	Danio_rerio
ENSVVUG00000010085	TRUB1	81	87.097	ENSDNOG00000001069	TRUB1	100	85.755	Dasypus_novemcinctus
ENSVVUG00000010085	TRUB1	83	89.595	ENSDORG00000010431	Trub1	99	88.728	Dipodomys_ordii
ENSVVUG00000010085	TRUB1	67	78.431	ENSETEG00000009183	TRUB1	81	77.941	Echinops_telfairi
ENSVVUG00000010085	TRUB1	80	93.175	ENSEASG00005014739	TRUB1	100	92.857	Equus_asinus_asinus
ENSVVUG00000010085	TRUB1	80	93.175	ENSECAG00000007177	TRUB1	100	92.857	Equus_caballus
ENSVVUG00000010085	TRUB1	83	77.095	ENSEEUG00000013993	TRUB1	99	77.374	Erinaceus_europaeus
ENSVVUG00000010085	TRUB1	59	70.204	ENSELUG00000000502	trub1	86	70.204	Esox_lucius
ENSVVUG00000010085	TRUB1	80	94.328	ENSFCAG00000031927	TRUB1	99	93.103	Felis_catus
ENSVVUG00000010085	TRUB1	58	77.083	ENSFALG00000002232	TRUB1	92	77.083	Ficedula_albicollis
ENSVVUG00000010085	TRUB1	58	85.597	ENSFDAG00000008140	TRUB1	99	84.774	Fukomys_damarensis
ENSVVUG00000010085	TRUB1	59	66.939	ENSFHEG00000004016	trub1	84	66.939	Fundulus_heteroclitus
ENSVVUG00000010085	TRUB1	66	75.000	ENSGALG00000009091	TRUB1	97	74.057	Gallus_gallus
ENSVVUG00000010085	TRUB1	58	65.417	ENSGAFG00000009193	trub1	86	64.754	Gambusia_affinis
ENSVVUG00000010085	TRUB1	70	76.976	ENSGAGG00000009758	TRUB1	80	78.292	Gopherus_agassizii
ENSVVUG00000010085	TRUB1	83	91.977	ENSGGOG00000004583	TRUB1	99	91.691	Gorilla_gorilla
ENSVVUG00000010085	TRUB1	61	67.460	ENSHBUG00000016787	trub1	91	67.460	Haplochromis_burtoni
ENSVVUG00000010085	TRUB1	84	84.857	ENSHGLG00000015314	TRUB1	100	84.857	Heterocephalus_glaber_female
ENSVVUG00000010085	TRUB1	58	85.124	ENSHGLG00100009183	TRUB1	100	85.124	Heterocephalus_glaber_male
ENSVVUG00000010085	TRUB1	59	68.571	ENSHCOG00000017877	trub1	89	68.571	Hippocampus_comes
ENSVVUG00000010085	TRUB1	67	65.580	ENSIPUG00000017559	trub1	97	65.580	Ictalurus_punctatus
ENSVVUG00000010085	TRUB1	73	94.702	ENSSTOG00000003641	TRUB1	100	88.761	Ictidomys_tridecemlineatus
ENSVVUG00000010085	TRUB1	83	85.838	ENSJJAG00000011800	Trub1	99	85.549	Jaculus_jaculus
ENSVVUG00000010085	TRUB1	61	66.148	ENSKMAG00000006232	trub1	92	66.148	Kryptolebias_marmoratus
ENSVVUG00000010085	TRUB1	64	64.662	ENSLBEG00000026722	trub1	92	64.662	Labrus_bergylta
ENSVVUG00000010085	TRUB1	67	73.551	ENSLACG00000014885	TRUB1	92	73.551	Latimeria_chalumnae
ENSVVUG00000010085	TRUB1	66	70.696	ENSLOCG00000012979	trub1	91	71.642	Lepisosteus_oculatus
ENSVVUG00000010085	TRUB1	83	79.944	ENSLAFG00000015452	TRUB1	99	82.203	Loxodonta_africana
ENSVVUG00000010085	TRUB1	83	91.977	ENSMFAG00000031767	TRUB1	99	92.264	Macaca_fascicularis
ENSVVUG00000010085	TRUB1	83	92.264	ENSMMUG00000001902	TRUB1	99	92.550	Macaca_mulatta
ENSVVUG00000010085	TRUB1	83	88.252	ENSMNEG00000044646	TRUB1	99	88.539	Macaca_nemestrina
ENSVVUG00000010085	TRUB1	83	91.977	ENSMLEG00000042655	TRUB1	99	92.550	Mandrillus_leucophaeus
ENSVVUG00000010085	TRUB1	61	67.460	ENSMZEG00005024095	trub1	91	67.460	Maylandia_zebra
ENSVVUG00000010085	TRUB1	66	74.265	ENSMGAG00000011135	TRUB1	93	74.265	Meleagris_gallopavo
ENSVVUG00000010085	TRUB1	67	85.714	ENSMAUG00000011101	Trub1	87	85.811	Mesocricetus_auratus
ENSVVUG00000010085	TRUB1	84	92.571	ENSMICG00000016324	TRUB1	100	91.714	Microcebus_murinus
ENSVVUG00000010085	TRUB1	78	84.259	ENSMOCG00000017759	Trub1	89	88.176	Microtus_ochrogaster
ENSVVUG00000010085	TRUB1	69	83.916	ENSMODG00000009676	TRUB1	81	82.095	Monodelphis_domestica
ENSVVUG00000010085	TRUB1	83	82.081	MGP_CAROLIEiJ_G0023100	Trub1	88	87.500	Mus_caroli
ENSVVUG00000010085	TRUB1	83	80.925	ENSMUSG00000025086	Trub1	88	86.486	Mus_musculus
ENSVVUG00000010085	TRUB1	83	82.081	MGP_PahariEiJ_G0014588	Trub1	99	80.347	Mus_pahari
ENSVVUG00000010085	TRUB1	83	81.214	MGP_SPRETEiJ_G0024021	Trub1	88	86.824	Mus_spretus
ENSVVUG00000010085	TRUB1	83	96.848	ENSMPUG00000003556	TRUB1	99	96.848	Mustela_putorius_furo
ENSVVUG00000010085	TRUB1	80	90.937	ENSMLUG00000017686	TRUB1	99	87.896	Myotis_lucifugus
ENSVVUG00000010085	TRUB1	83	84.814	ENSNGAG00000018682	Trub1	85	91.582	Nannospalax_galili
ENSVVUG00000010085	TRUB1	59	68.699	ENSNBRG00000023393	trub1	88	68.699	Neolamprologus_brichardi
ENSVVUG00000010085	TRUB1	80	91.667	ENSNLEG00000016345	TRUB1	99	91.977	Nomascus_leucogenys
ENSVVUG00000010085	TRUB1	73	86.755	ENSOPRG00000009371	TRUB1	87	86.913	Ochotona_princeps
ENSVVUG00000010085	TRUB1	83	84.241	ENSODEG00000010854	TRUB1	99	83.954	Octodon_degus
ENSVVUG00000010085	TRUB1	59	68.293	ENSONIG00000007249	trub1	89	68.293	Oreochromis_niloticus
ENSVVUG00000010085	TRUB1	66	81.022	ENSOANG00000001556	TRUB1	90	81.022	Ornithorhynchus_anatinus
ENSVVUG00000010085	TRUB1	73	88.742	ENSOCUG00000009456	TRUB1	86	88.926	Oryctolagus_cuniculus
ENSVVUG00000010085	TRUB1	58	69.008	ENSORLG00000029719	trub1	87	69.008	Oryzias_latipes
ENSVVUG00000010085	TRUB1	58	68.595	ENSORLG00020016767	trub1	86	68.595	Oryzias_latipes_hni
ENSVVUG00000010085	TRUB1	58	68.595	ENSORLG00015014728	trub1	87	68.595	Oryzias_latipes_hsok
ENSVVUG00000010085	TRUB1	63	65.649	ENSOMEG00000014556	trub1	85	68.595	Oryzias_melastigma
ENSVVUG00000010085	TRUB1	84	93.143	ENSOGAG00000015895	TRUB1	100	92.286	Otolemur_garnettii
ENSVVUG00000010085	TRUB1	71	94.702	ENSOARG00000015591	TRUB1	99	90.085	Ovis_aries
ENSVVUG00000010085	TRUB1	83	91.977	ENSPPAG00000043645	TRUB1	99	91.691	Pan_paniscus
ENSVVUG00000010085	TRUB1	80	94.030	ENSPPRG00000007096	TRUB1	99	92.816	Panthera_pardus
ENSVVUG00000010085	TRUB1	80	94.328	ENSPTIG00000006378	TRUB1	99	93.103	Panthera_tigris_altaica
ENSVVUG00000010085	TRUB1	83	91.977	ENSPTRG00000002964	TRUB1	99	91.691	Pan_troglodytes
ENSVVUG00000010085	TRUB1	83	92.264	ENSPANG00000020712	TRUB1	99	92.550	Papio_anubis
ENSVVUG00000010085	TRUB1	66	77.574	ENSPSIG00000012877	TRUB1	93	77.574	Pelodiscus_sinensis
ENSVVUG00000010085	TRUB1	59	65.714	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSVVUG00000010085	TRUB1	71	86.486	ENSPEMG00000011156	Trub1	87	86.486	Peromyscus_maniculatus_bairdii
ENSVVUG00000010085	TRUB1	69	83.217	ENSPCIG00000009729	TRUB1	79	82.192	Phascolarctos_cinereus
ENSVVUG00000010085	TRUB1	59	66.531	ENSPFOG00000009950	trub1	90	66.531	Poecilia_formosa
ENSVVUG00000010085	TRUB1	59	66.531	ENSPLAG00000013855	trub1	86	66.531	Poecilia_latipinna
ENSVVUG00000010085	TRUB1	59	66.531	ENSPMEG00000009064	trub1	88	66.531	Poecilia_mexicana
ENSVVUG00000010085	TRUB1	59	67.347	ENSPREG00000003343	trub1	88	67.347	Poecilia_reticulata
ENSVVUG00000010085	TRUB1	80	91.667	ENSPPYG00000002676	TRUB1	99	91.404	Pongo_abelii
ENSVVUG00000010085	TRUB1	83	76.989	ENSPCAG00000008427	TRUB1	99	75.852	Procavia_capensis
ENSVVUG00000010085	TRUB1	84	87.429	ENSPCOG00000024360	TRUB1	100	86.571	Propithecus_coquereli
ENSVVUG00000010085	TRUB1	63	92.045	ENSPVAG00000007575	TRUB1	100	93.182	Pteropus_vampyrus
ENSVVUG00000010085	TRUB1	61	67.460	ENSPNYG00000018614	trub1	91	67.460	Pundamilia_nyererei
ENSVVUG00000010085	TRUB1	63	59.615	ENSPNAG00000006881	trub1	84	59.615	Pygocentrus_nattereri
ENSVVUG00000010085	TRUB1	83	83.237	ENSRNOG00000017321	Trub1	87	87.500	Rattus_norvegicus
ENSVVUG00000010085	TRUB1	83	81.948	ENSRBIG00000033423	TRUB1	99	82.235	Rhinopithecus_bieti
ENSVVUG00000010085	TRUB1	83	91.691	ENSRROG00000033902	TRUB1	99	91.977	Rhinopithecus_roxellana
ENSVVUG00000010085	TRUB1	80	92.560	ENSSBOG00000024237	TRUB1	99	92.286	Saimiri_boliviensis_boliviensis
ENSVVUG00000010085	TRUB1	61	82.031	ENSSHAG00000009346	TRUB1	86	82.031	Sarcophilus_harrisii
ENSVVUG00000010085	TRUB1	59	70.370	ENSSFOG00015022124	trub1	83	70.370	Scleropages_formosus
ENSVVUG00000010085	TRUB1	59	69.106	ENSSMAG00000001020	trub1	88	69.106	Scophthalmus_maximus
ENSVVUG00000010085	TRUB1	58	69.583	ENSSDUG00000016414	trub1	88	69.512	Seriola_dumerili
ENSVVUG00000010085	TRUB1	58	70.000	ENSSLDG00000015486	trub1	88	69.919	Seriola_lalandi_dorsalis
ENSVVUG00000010085	TRUB1	67	77.500	ENSSPUG00000001642	TRUB1	96	77.500	Sphenodon_punctatus
ENSVVUG00000010085	TRUB1	63	66.920	ENSSPAG00000001217	trub1	94	66.920	Stegastes_partitus
ENSVVUG00000010085	TRUB1	84	88.000	ENSSSCG00000010653	TRUB1	100	87.143	Sus_scrofa
ENSVVUG00000010085	TRUB1	65	76.667	ENSTGUG00000010971	TRUB1	97	76.471	Taeniopygia_guttata
ENSVVUG00000010085	TRUB1	61	78.656	ENSTBEG00000002880	TRUB1	99	78.656	Tupaia_belangeri
ENSVVUG00000010085	TRUB1	60	92.771	ENSTTRG00000005767	TRUB1	100	91.603	Tursiops_truncatus
ENSVVUG00000010085	TRUB1	83	96.848	ENSUAMG00000024876	TRUB1	99	96.848	Ursus_americanus
ENSVVUG00000010085	TRUB1	83	95.376	ENSUMAG00000002411	TRUB1	99	95.376	Ursus_maritimus
ENSVVUG00000010085	TRUB1	83	93.123	ENSVPAG00000005507	TRUB1	99	92.550	Vicugna_pacos
ENSVVUG00000010085	TRUB1	66	66.912	ENSXETG00000023828	trub1	98	66.912	Xenopus_tropicalis
ENSVVUG00000010085	TRUB1	63	62.595	ENSXCOG00000017847	trub1	86	65.432	Xiphophorus_couchianus
ENSVVUG00000010085	TRUB1	59	65.714	ENSXMAG00000014701	trub1	88	65.714	Xiphophorus_maculatus