EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000013172 (Gene tree)
Gene ID: -
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrNBDQ01000129.1:5950851-5951999
Accession: 112933589
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000017906	RRM_5	PF13893.6	2.4e-11	1	2
ENSVVUP00000017906	RRM_5	PF13893.6	2.4e-11	2	2
ENSVVUP00000017906	RRM_1	PF00076.22	3.3e-79	1	4
ENSVVUP00000017906	RRM_1	PF00076.22	3.3e-79	2	4
ENSVVUP00000017906	RRM_1	PF00076.22	3.3e-79	3	4
ENSVVUP00000017906	RRM_1	PF00076.22	3.3e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000023608	PABPC5-201	1149	-	ENSVVUP00000017906	382 (aa)	XP_025872554	UPI00004A77DE

Gene Model

Click here to download ENSVVUG00000013172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000013172's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000013172	PABPC5	94	35.802	ENSVVUG00000021291	ELAVL2	83	35.802
ENSVVUG00000013172	PABPC5	95	61.157	ENSVVUG00000018939	PABPC1L	62	61.236
ENSVVUG00000013172	PABPC5	93	59.694	ENSVVUG00000015892	-	95	59.375
ENSVVUG00000013172	PABPC5	94	65.217	ENSVVUG00000013156	PABPC1	54	65.217
ENSVVUG00000013172	PABPC5	96	57.955	ENSVVUG00000011060	-	75	57.738
ENSVVUG00000013172	PABPC5	95	67.493	ENSVVUG00000005215	PABPC4	58	67.697

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000013172	PABPC5	99	97.113	ENSG00000174740	PABPC5	99	97.113	Homo_sapiens
ENSVVUG00000013172	PABPC5	99	99.213	ENSAMEG00000020114	PABPC5	100	99.213	Ailuropoda_melanoleuca
ENSVVUG00000013172	PABPC5	99	97.113	ENSANAG00000005063	PABPC5	99	97.113	Aotus_nancymaae
ENSVVUG00000013172	PABPC5	100	96.597	ENSBTAG00000019942	PABPC5	100	96.597	Bos_taurus
ENSVVUG00000013172	PABPC5	99	96.588	ENSCJAG00000003665	PABPC5	99	96.588	Callithrix_jacchus
ENSVVUG00000013172	PABPC5	100	99.738	ENSCAFG00000017452	PABPC5	100	99.738	Canis_familiaris
ENSVVUG00000013172	PABPC5	100	96.597	ENSCHIG00000019004	PABPC5	100	96.597	Capra_hircus
ENSVVUG00000013172	PABPC5	100	97.120	ENSTSYG00000036351	PABPC5	100	97.120	Carlito_syrichta
ENSVVUG00000013172	PABPC5	99	86.911	ENSCAPG00000010714	PABPC5	100	86.911	Cavia_aperea
ENSVVUG00000013172	PABPC5	100	93.717	ENSCPOG00000002555	PABPC5	100	93.717	Cavia_porcellus
ENSVVUG00000013172	PABPC5	99	97.113	ENSCCAG00000032154	PABPC5	99	97.113	Cebus_capucinus
ENSVVUG00000013172	PABPC5	99	97.113	ENSCATG00000043083	PABPC5	99	97.113	Cercocebus_atys
ENSVVUG00000013172	PABPC5	100	95.026	ENSCLAG00000000647	PABPC5	100	95.026	Chinchilla_lanigera
ENSVVUG00000013172	PABPC5	99	97.113	ENSCSAG00000000065	PABPC5	99	97.113	Chlorocebus_sabaeus
ENSVVUG00000013172	PABPC5	99	97.113	ENSCANG00000011473	PABPC5	99	97.113	Colobus_angolensis_palliatus
ENSVVUG00000013172	PABPC5	100	93.717	ENSCGRG00000018699	Pabpc5	100	93.717	Cricetulus_griseus_crigri
ENSVVUG00000013172	PABPC5	100	78.590	ENSETEG00000011832	PABPC5	100	78.590	Echinops_telfairi
ENSVVUG00000013172	PABPC5	100	97.906	ENSEASG00005014396	PABPC5	100	97.906	Equus_asinus_asinus
ENSVVUG00000013172	PABPC5	100	97.906	ENSECAG00000003452	PABPC5	100	97.906	Equus_caballus
ENSVVUG00000013172	PABPC5	100	99.476	ENSFCAG00000004998	PABPC5	100	99.476	Felis_catus
ENSVVUG00000013172	PABPC5	100	96.073	ENSFDAG00000000126	PABPC5	100	96.073	Fukomys_damarensis
ENSVVUG00000013172	PABPC5	99	97.113	ENSGGOG00000007622	PABPC5	99	97.113	Gorilla_gorilla
ENSVVUG00000013172	PABPC5	95	95.872	ENSJJAG00000011960	Pabpc5	100	95.872	Jaculus_jaculus
ENSVVUG00000013172	PABPC5	99	97.113	ENSMFAG00000024561	PABPC5	99	97.113	Macaca_fascicularis
ENSVVUG00000013172	PABPC5	99	97.113	ENSMMUG00000011562	PABPC5	99	97.113	Macaca_mulatta
ENSVVUG00000013172	PABPC5	99	97.113	ENSMNEG00000037604	PABPC5	99	97.113	Macaca_nemestrina
ENSVVUG00000013172	PABPC5	99	97.113	ENSMLEG00000028318	PABPC5	99	97.113	Mandrillus_leucophaeus
ENSVVUG00000013172	PABPC5	100	96.073	ENSMICG00000041706	PABPC5	100	96.073	Microcebus_murinus
ENSVVUG00000013172	PABPC5	100	95.550	ENSMOCG00000001554	Pabpc5	100	95.550	Microtus_ochrogaster
ENSVVUG00000013172	PABPC5	99	93.421	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	Mus_caroli
ENSVVUG00000013172	PABPC5	99	93.947	ENSMUSG00000034732	Pabpc5	99	93.947	Mus_musculus
ENSVVUG00000013172	PABPC5	100	94.241	MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	Mus_pahari
ENSVVUG00000013172	PABPC5	99	93.947	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	Mus_spretus
ENSVVUG00000013172	PABPC5	100	98.691	ENSMPUG00000018465	PABPC5	100	98.691	Mustela_putorius_furo
ENSVVUG00000013172	PABPC5	100	96.335	ENSMLUG00000008244	PABPC5	100	96.335	Myotis_lucifugus
ENSVVUG00000013172	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSVVUG00000013172	PABPC5	99	97.113	ENSNLEG00000035086	PABPC5	99	97.113	Nomascus_leucogenys
ENSVVUG00000013172	PABPC5	98	98.182	ENSOPRG00000000856	PABPC5	99	98.182	Ochotona_princeps
ENSVVUG00000013172	PABPC5	100	96.859	ENSOCUG00000010919	PABPC5	100	96.859	Oryctolagus_cuniculus
ENSVVUG00000013172	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSVVUG00000013172	PABPC5	100	96.859	ENSOARG00000010260	PABPC5	100	96.859	Ovis_aries
ENSVVUG00000013172	PABPC5	99	96.850	ENSPPAG00000007378	PABPC5	99	96.850	Pan_paniscus
ENSVVUG00000013172	PABPC5	100	99.476	ENSPPRG00000010742	PABPC5	100	99.476	Panthera_pardus
ENSVVUG00000013172	PABPC5	100	99.476	ENSPTIG00000001480	PABPC5	100	99.476	Panthera_tigris_altaica
ENSVVUG00000013172	PABPC5	99	97.113	ENSPTRG00000022078	PABPC5	99	97.113	Pan_troglodytes
ENSVVUG00000013172	PABPC5	99	97.113	ENSPANG00000018282	PABPC5	99	97.113	Papio_anubis
ENSVVUG00000013172	PABPC5	100	94.241	ENSPEMG00000000171	Pabpc5	100	94.241	Peromyscus_maniculatus_bairdii
ENSVVUG00000013172	PABPC5	99	97.113	ENSPPYG00000020526	PABPC5	99	97.113	Pongo_abelii
ENSVVUG00000013172	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSVVUG00000013172	PABPC5	100	96.859	ENSPCOG00000000676	PABPC5	100	96.859	Propithecus_coquereli
ENSVVUG00000013172	PABPC5	100	97.644	ENSPVAG00000006465	PABPC5	100	97.644	Pteropus_vampyrus
ENSVVUG00000013172	PABPC5	100	94.241	ENSRNOG00000003354	Pabpc5	100	94.241	Rattus_norvegicus
ENSVVUG00000013172	PABPC5	99	97.113	ENSRBIG00000011760	PABPC5	99	97.113	Rhinopithecus_bieti
ENSVVUG00000013172	PABPC5	99	97.113	ENSRROG00000036708	PABPC5	99	97.113	Rhinopithecus_roxellana
ENSVVUG00000013172	PABPC5	99	97.113	ENSSBOG00000008658	PABPC5	99	97.113	Saimiri_boliviensis_boliviensis
ENSVVUG00000013172	PABPC5	100	94.503	ENSSARG00000014012	PABPC5	100	94.503	Sorex_araneus
ENSVVUG00000013172	PABPC5	100	97.382	ENSSSCG00000040194	PABPC5	100	97.382	Sus_scrofa
ENSVVUG00000013172	PABPC5	100	97.644	ENSTBEG00000016482	PABPC5	100	97.644	Tupaia_belangeri
ENSVVUG00000013172	PABPC5	100	99.215	ENSUAMG00000013627	PABPC5	100	99.215	Ursus_americanus
ENSVVUG00000013172	PABPC5	100	98.953	ENSUMAG00000023934	PABPC5	100	98.953	Ursus_maritimus
ENSVVUG00000013172	PABPC5	100	97.382	ENSVPAG00000001063	PABPC5	100	97.382	Vicugna_pacos