EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSVVUG00000013538 (Gene tree)
Gene ID
-
Gene Symbol
UPF3A
Alias
HUPF3A|RENT3A|UPF3
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Vulpes_vulpes
Status
putative
Strand
Minus strand
Length
49962 bases
Position
chrNBDQ01000074.1:9731-59692
Accession
20332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSVVUP00000018401Smg4_UPF3PF03467.154.2e-5111
ENSVVUP00000018390Smg4_UPF3PF03467.154.3e-5111
ENSVVUP00000018384Smg4_UPF3PF03467.154.4e-5111
ENSVVUP00000018380Smg4_UPF3PF03467.154.7e-5111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSVVUT00000024267UPF3A-2031497-ENSVVUP00000018390498 (aa)--
ENSVVUT00000024279UPF3A-2041482-ENSVVUP00000018401493 (aa)--
ENSVVUT00000024261UPF3A-2021585-ENSVVUP00000018384502 (aa)--
ENSVVUT00000024257UPF3A-2012560-ENSVVUP00000018380519 (aa)--
Gene Model
Click here to download ENSVVUG00000013538's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000013538's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSVVUG00000013538UPF3A8043.921ENSVVUG00000011594UPF3B7866.265
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSVVUG00000013538UPF3A9471.459ENSG00000169062UPF3A9972.115Homo_sapiens
ENSVVUG00000013538UPF3A5550.000ENSG00000125351UPF3B7666.667Homo_sapiens
ENSVVUG00000013538UPF3A9284.176ENSAMEG00000004259UPF3A10084.176Ailuropoda_melanoleuca
ENSVVUG00000013538UPF3A8142.080ENSAMEG00000000163UPF3B8444.389Ailuropoda_melanoleuca
ENSVVUG00000013538UPF3A8854.176ENSATEG00000005843upf3a8357.683Anabas_testudineus
ENSVVUG00000013538UPF3A8044.604ENSACAG00000003625UPF3B8750.242Anolis_carolinensis
ENSVVUG00000013538UPF3A7769.291ENSACAG00000001540UPF3A9269.291Anolis_carolinensis
ENSVVUG00000013538UPF3A9270.175ENSANAG00000021713UPF3A9670.175Aotus_nancymaae
ENSVVUG00000013538UPF3A8042.927ENSANAG00000021894-7766.265Aotus_nancymaae
ENSVVUG00000013538UPF3A8042.822ENSANAG00000025598-8345.185Aotus_nancymaae
ENSVVUG00000013538UPF3A8953.215ENSAMXG00000002608upf3a9156.808Astyanax_mexicanus
ENSVVUG00000013538UPF3A9269.956ENSCJAG00000019102UPF3A9669.956Callithrix_jacchus
ENSVVUG00000013538UPF3A7943.284ENSCJAG00000004975UPF3B7765.663Callithrix_jacchus
ENSVVUG00000013538UPF3A9493.737ENSCAFG00000006504UPF3A10093.737Canis_familiaris
ENSVVUG00000013538UPF3A8143.552ENSCAFG00000018426UPF3B8645.885Canis_familiaris
ENSVVUG00000013538UPF3A9694.292ENSCAFG00020014268UPF3A9994.292Canis_lupus_dingo
ENSVVUG00000013538UPF3A8143.735ENSCAFG00020004074UPF3B8344.612Canis_lupus_dingo
ENSVVUG00000013538UPF3A7738.342ENSCHIG00000011454-8236.292Capra_hircus
ENSVVUG00000013538UPF3A9469.742ENSCHIG00000008682UPF3A9469.772Capra_hircus
ENSVVUG00000013538UPF3A7166.022ENSTSYG00000001918UPF3A9666.022Carlito_syrichta
ENSVVUG00000013538UPF3A5152.918ENSTSYG00000014690UPF3B7761.404Carlito_syrichta
ENSVVUG00000013538UPF3A8464.115ENSCPOG00000006824UPF3A9664.115Cavia_porcellus
ENSVVUG00000013538UPF3A9272.588ENSCCAG00000018406UPF3A9672.588Cebus_capucinus
ENSVVUG00000013538UPF3A9470.815ENSCATG00000029733UPF3A9870.815Cercocebus_atys
ENSVVUG00000013538UPF3A5053.414ENSCATG00000017506UPF3B7766.265Cercocebus_atys
ENSVVUG00000013538UPF3A5053.815ENSCLAG00000003260UPF3B9144.292Chinchilla_lanigera
ENSVVUG00000013538UPF3A9470.149ENSCSAG00000017388UPF3A9870.149Chlorocebus_sabaeus
ENSVVUG00000013538UPF3A5056.680ENSCPBG00000020685UPF3B8645.432Chrysemys_picta_bellii
ENSVVUG00000013538UPF3A5054.217ENSCGRG00001006858-8449.020Cricetulus_griseus_chok1gshd
ENSVVUG00000013538UPF3A8868.879ENSCGRG00001017387Upf3a10068.119Cricetulus_griseus_chok1gshd
ENSVVUG00000013538UPF3A8768.822ENSCGRG00000001468Upf3a9968.056Cricetulus_griseus_crigri
ENSVVUG00000013538UPF3A7847.407ENSCSEG00000002046upf3b9047.640Cynoglossus_semilaevis
ENSVVUG00000013538UPF3A8158.105ENSCSEG00000005106upf3a8558.105Cynoglossus_semilaevis
ENSVVUG00000013538UPF3A8057.072ENSCVAG00000022333upf3a8157.576Cyprinodon_variegatus
ENSVVUG00000013538UPF3A8173.966ENSDNOG00000034391UPF3A9873.550Dasypus_novemcinctus
ENSVVUG00000013538UPF3A5649.643ENSDORG00000006077Upf3b8448.780Dipodomys_ordii
ENSVVUG00000013538UPF3A9861.602ENSETEG00000010110UPF3A9961.807Echinops_telfairi
ENSVVUG00000013538UPF3A9974.082ENSEASG00005021884UPF3A9974.793Equus_asinus_asinus
ENSVVUG00000013538UPF3A7945.226ENSEASG00005012919UPF3B8445.226Equus_asinus_asinus
ENSVVUG00000013538UPF3A7945.226ENSECAG00000016947UPF3B8445.226Equus_caballus
ENSVVUG00000013538UPF3A9874.380ENSECAG00000017141UPF3A9974.380Equus_caballus
ENSVVUG00000013538UPF3A9154.725ENSELUG00000011050upf3a9153.846Esox_lucius
ENSVVUG00000013538UPF3A5053.414ENSFCAG00000004388UPF3B8444.802Felis_catus
ENSVVUG00000013538UPF3A9878.557ENSFCAG00000014602UPF3A10078.557Felis_catus
ENSVVUG00000013538UPF3A9040.377ENSFALG00000001569UPF3B9045.188Ficedula_albicollis
ENSVVUG00000013538UPF3A8740.998ENSFDAG00000018869UPF3B9143.736Fukomys_damarensis
ENSVVUG00000013538UPF3A5747.423ENSGMOG00000001621upf3b9045.057Gadus_morhua
ENSVVUG00000013538UPF3A6759.302ENSGMOG00000019615upf3a10059.302Gadus_morhua
ENSVVUG00000013538UPF3A6761.243ENSGACG00000001972upf3a10061.862Gasterosteus_aculeatus
ENSVVUG00000013538UPF3A8243.326ENSGAGG00000001219UPF3B8745.721Gopherus_agassizii
ENSVVUG00000013538UPF3A9471.459ENSGGOG00000015428UPF3A9871.459Gorilla_gorilla
ENSVVUG00000013538UPF3A5550.000ENSGGOG00000023995UPF3B9143.498Gorilla_gorilla
ENSVVUG00000013538UPF3A9353.030ENSGGOG00000043074-8361.404Gorilla_gorilla
ENSVVUG00000013538UPF3A8558.768ENSGGOG00000041219-8961.307Gorilla_gorilla
ENSVVUG00000013538UPF3A8068.101ENSHGLG00000001544UPF3A9167.848Heterocephalus_glaber_female
ENSVVUG00000013538UPF3A5250.000ENSHGLG00000011189-8443.733Heterocephalus_glaber_female
ENSVVUG00000013538UPF3A8740.576ENSHGLG00000019582-9143.182Heterocephalus_glaber_female
ENSVVUG00000013538UPF3A5250.000ENSHGLG00100001889-8444.225Heterocephalus_glaber_male
ENSVVUG00000013538UPF3A8068.101ENSHGLG00100013244UPF3A9167.848Heterocephalus_glaber_male
ENSVVUG00000013538UPF3A5252.308ENSHGLG00100002042-9142.534Heterocephalus_glaber_male
ENSVVUG00000013538UPF3A7946.798ENSHCOG00000017004upf3b9047.156Hippocampus_comes
ENSVVUG00000013538UPF3A8257.740ENSIPUG00000023450upf3a8657.740Ictalurus_punctatus
ENSVVUG00000013538UPF3A8740.652ENSSTOG00000001101UPF3B9143.274Ictidomys_tridecemlineatus
ENSVVUG00000013538UPF3A5948.377ENSJJAG00000000053Upf3b8941.775Jaculus_jaculus
ENSVVUG00000013538UPF3A8753.089ENSKMAG00000004381upf3a8356.675Kryptolebias_marmoratus
ENSVVUG00000013538UPF3A6245.536ENSLACG00000006645UPF3A10040.970Latimeria_chalumnae
ENSVVUG00000013538UPF3A8759.497ENSLOCG00000002665upf3a9260.233Lepisosteus_oculatus
ENSVVUG00000013538UPF3A8158.796ENSLAFG00000023358UPF3A9958.548Loxodonta_africana
ENSVVUG00000013538UPF3A8542.212ENSLAFG00000001267UPF3B9144.018Loxodonta_africana
ENSVVUG00000013538UPF3A9467.880ENSMFAG00000045016UPF3A9867.666Macaca_fascicularis
ENSVVUG00000013538UPF3A5053.414ENSMFAG00000045414UPF3B7766.265Macaca_fascicularis
ENSVVUG00000013538UPF3A5053.414ENSMMUG00000020222UPF3B7766.265Macaca_mulatta
ENSVVUG00000013538UPF3A9069.955ENSMMUG00000007449UPF3A9867.957Macaca_mulatta
ENSVVUG00000013538UPF3A5053.414ENSMNEG00000039794UPF3B7766.265Macaca_nemestrina
ENSVVUG00000013538UPF3A9463.941ENSMNEG00000036402UPF3A8171.106Macaca_nemestrina
ENSVVUG00000013538UPF3A8071.106ENSMLEG00000014726UPF3A9271.106Mandrillus_leucophaeus
ENSVVUG00000013538UPF3A5053.414ENSMLEG00000010999UPF3B7766.265Mandrillus_leucophaeus
ENSVVUG00000013538UPF3A8066.833ENSMGAG00000014837UPF3A9966.915Meleagris_gallopavo
ENSVVUG00000013538UPF3A8143.614ENSMAUG00000008705Upf3b8450.493Mesocricetus_auratus
ENSVVUG00000013538UPF3A6378.344ENSMOCG00000000550Upf3a8777.316Microtus_ochrogaster
ENSVVUG00000013538UPF3A8570.023ENSMODG00000003159UPF3A9970.023Monodelphis_domestica
ENSVVUG00000013538UPF3A7846.535ENSMODG00000010232UPF3B9250.990Monodelphis_domestica
ENSVVUG00000013538UPF3A8740.929MGP_CAROLIEiJ_G0032999Upf3b8748.341Mus_caroli
ENSVVUG00000013538UPF3A8466.587MGP_CAROLIEiJ_G0030848Upf3a9966.437Mus_caroli
ENSVVUG00000013538UPF3A8468.585ENSMUSG00000038398Upf3a9967.816Mus_musculus
ENSVVUG00000013538UPF3A5848.805ENSMUSG00000036572Upf3b8748.104Mus_musculus
ENSVVUG00000013538UPF3A8468.106MGP_PahariEiJ_G0021311Upf3a9967.356Mus_pahari
ENSVVUG00000013538UPF3A8242.686MGP_PahariEiJ_G0031543Upf3b8449.389Mus_pahari
ENSVVUG00000013538UPF3A8468.585MGP_SPRETEiJ_G0031958Upf3a9967.816Mus_spretus
ENSVVUG00000013538UPF3A5848.805MGP_SPRETEiJ_G0034152Upf3b8748.104Mus_spretus
ENSVVUG00000013538UPF3A5252.107ENSMPUG00000001531UPF3B8645.363Mustela_putorius_furo
ENSVVUG00000013538UPF3A9882.438ENSMPUG00000009139UPF3A10082.438Mustela_putorius_furo
ENSVVUG00000013538UPF3A7643.276ENSMLUG00000010821UPF3B8449.136Myotis_lucifugus
ENSVVUG00000013538UPF3A8475.000ENSMLUG00000015905UPF3A9975.000Myotis_lucifugus
ENSVVUG00000013538UPF3A8868.192ENSNGAG00000019314Upf3a10068.192Nannospalax_galili
ENSVVUG00000013538UPF3A5053.414ENSNLEG00000014897UPF3B9143.274Nomascus_leucogenys
ENSVVUG00000013538UPF3A9470.878ENSNLEG00000007563UPF3A9870.878Nomascus_leucogenys
ENSVVUG00000013538UPF3A5067.206ENSOPRG00000008846-5867.063Ochotona_princeps
ENSVVUG00000013538UPF3A8839.651ENSODEG00000002186-9142.237Octodon_degus
ENSVVUG00000013538UPF3A7463.115ENSOANG00000006985-9563.115Ornithorhynchus_anatinus
ENSVVUG00000013538UPF3A7743.137ENSOANG00000002594-9342.680Ornithorhynchus_anatinus
ENSVVUG00000013538UPF3A8460.563ENSOCUG00000008450UPF3A8560.563Oryctolagus_cuniculus
ENSVVUG00000013538UPF3A8353.791ENSORLG00000010911upf3a8356.468Oryzias_latipes
ENSVVUG00000013538UPF3A8038.849ENSORLG00000001026upf3b9140.793Oryzias_latipes
ENSVVUG00000013538UPF3A8038.849ENSORLG00020003758upf3b9145.176Oryzias_latipes_hni
ENSVVUG00000013538UPF3A8353.110ENSORLG00020014317upf3a8355.528Oryzias_latipes_hni
ENSVVUG00000013538UPF3A8038.849ENSORLG00015012954upf3b9140.793Oryzias_latipes_hsok
ENSVVUG00000013538UPF3A8254.545ENSOMEG00000014425upf3a8357.286Oryzias_melastigma
ENSVVUG00000013538UPF3A5149.643ENSOGAG00000033003-9046.101Otolemur_garnettii
ENSVVUG00000013538UPF3A5848.675ENSOGAG00000004643-8445.658Otolemur_garnettii
ENSVVUG00000013538UPF3A8073.300ENSOGAG00000004788UPF3A9673.300Otolemur_garnettii
ENSVVUG00000013538UPF3A9370.217ENSOARG00000009004UPF3A9570.000Ovis_aries
ENSVVUG00000013538UPF3A8141.769ENSOARG00000007869-9540.098Ovis_aries
ENSVVUG00000013538UPF3A9370.652ENSPPAG00000042267UPF3A9770.652Pan_paniscus
ENSVVUG00000013538UPF3A5550.000ENSPPAG00000040390UPF3B9143.498Pan_paniscus
ENSVVUG00000013538UPF3A9879.175ENSPPRG00000025062UPF3A10079.175Panthera_pardus
ENSVVUG00000013538UPF3A5152.140ENSPPRG00000023536UPF3B8444.389Panthera_pardus
ENSVVUG00000013538UPF3A5053.414ENSPTIG00000015264UPF3B8443.990Panthera_tigris_altaica
ENSVVUG00000013538UPF3A9470.815ENSPTRG00000006073UPF3A9870.815Pan_troglodytes
ENSVVUG00000013538UPF3A8556.398ENSPTRG00000051640-8958.291Pan_troglodytes
ENSVVUG00000013538UPF3A8060.050ENSPTRG00000041187-8959.799Pan_troglodytes
ENSVVUG00000013538UPF3A5550.000ENSPTRG00000022228UPF3B9143.498Pan_troglodytes
ENSVVUG00000013538UPF3A8058.291ENSPTRG00000041835-8957.286Pan_troglodytes
ENSVVUG00000013538UPF3A9271.868ENSPANG00000004346UPF3A9870.601Papio_anubis
ENSVVUG00000013538UPF3A5053.414ENSPANG00000000900UPF3B7766.265Papio_anubis
ENSVVUG00000013538UPF3A8451.656ENSPKIG00000004422upf3a9851.685Paramormyrops_kingsleyae
ENSVVUG00000013538UPF3A8468.106ENSPSIG00000007468UPF3A9968.106Pelodiscus_sinensis
ENSVVUG00000013538UPF3A8370.773ENSPEMG00000019968-10067.506Peromyscus_maniculatus_bairdii
ENSVVUG00000013538UPF3A5252.290ENSPEMG00000012352Upf3b8448.786Peromyscus_maniculatus_bairdii
ENSVVUG00000013538UPF3A7774.684ENSPCIG00000019590-9971.260Phascolarctos_cinereus
ENSVVUG00000013538UPF3A8145.047ENSPCIG00000028914UPF3B8346.115Phascolarctos_cinereus
ENSVVUG00000013538UPF3A8446.035ENSPFOG00000013222upf3a8457.855Poecilia_formosa
ENSVVUG00000013538UPF3A8446.698ENSPLAG00000011960upf3a8557.107Poecilia_latipinna
ENSVVUG00000013538UPF3A8446.226ENSPMEG00000000836upf3a8455.399Poecilia_mexicana
ENSVVUG00000013538UPF3A9471.030ENSPPYG00000005536UPF3A9871.030Pongo_abelii
ENSVVUG00000013538UPF3A6766.168ENSPCAG00000013124UPF3A6966.168Procavia_capensis
ENSVVUG00000013538UPF3A8043.552ENSPCOG00000021960UPF3B8449.275Propithecus_coquereli
ENSVVUG00000013538UPF3A9870.661ENSPVAG00000005656UPF3A9970.661Pteropus_vampyrus
ENSVVUG00000013538UPF3A8140.049ENSPNYG00000009846upf3b9144.056Pundamilia_nyererei
ENSVVUG00000013538UPF3A9253.105ENSPNAG00000019532upf3a9155.711Pygocentrus_nattereri
ENSVVUG00000013538UPF3A8368.523ENSRNOG00000017397Upf3a9868.049Rattus_norvegicus
ENSVVUG00000013538UPF3A5054.217ENSRNOG00000039994Upf3b9146.847Rattus_norvegicus
ENSVVUG00000013538UPF3A8270.343ENSRBIG00000034007UPF3A9070.343Rhinopithecus_bieti
ENSVVUG00000013538UPF3A5550.000ENSRROG00000041031UPF3B7766.265Rhinopithecus_roxellana
ENSVVUG00000013538UPF3A8071.285ENSRROG00000012212UPF3A8371.285Rhinopithecus_roxellana
ENSVVUG00000013538UPF3A8542.237ENSSBOG00000019740UPF3B7867.683Saimiri_boliviensis_boliviensis
ENSVVUG00000013538UPF3A9264.912ENSSBOG00000029989UPF3A9564.912Saimiri_boliviensis_boliviensis
ENSVVUG00000013538UPF3A8370.803ENSSHAG00000009895UPF3A9870.803Sarcophilus_harrisii
ENSVVUG00000013538UPF3A7946.117ENSSHAG00000008634UPF3B8247.000Sarcophilus_harrisii
ENSVVUG00000013538UPF3A5253.992ENSSFOG00015005614upf3b9143.953Scleropages_formosus
ENSVVUG00000013538UPF3A8952.489ENSSFOG00015021851upf3a9153.613Scleropages_formosus
ENSVVUG00000013538UPF3A5061.390ENSSMAG00000012913upf3b8847.506Scophthalmus_maximus
ENSVVUG00000013538UPF3A8746.818ENSSDUG00000009680upf3a8455.231Seriola_dumerili
ENSVVUG00000013538UPF3A7863.472ENSSARG00000007262UPF3A9460.881Sorex_araneus
ENSVVUG00000013538UPF3A8243.224ENSSPUG00000013082UPF3B8444.769Sphenodon_punctatus
ENSVVUG00000013538UPF3A8641.031ENSSSCG00000012617UPF3B9142.922Sus_scrofa
ENSVVUG00000013538UPF3A9871.047ENSSSCG00000024679UPF3A9771.281Sus_scrofa
ENSVVUG00000013538UPF3A7744.724ENSTGUG00000003413UPF3B9245.823Taeniopygia_guttata
ENSVVUG00000013538UPF3A7971.827ENSTGUG00000009493UPF3A9971.756Taeniopygia_guttata
ENSVVUG00000013538UPF3A7849.873ENSTNIG00000014973upf3a9850.750Tetraodon_nigroviridis
ENSVVUG00000013538UPF3A6362.939ENSTBEG00000017186-9862.939Tupaia_belangeri
ENSVVUG00000013538UPF3A9864.669ENSTTRG00000015414UPF3A9964.669Tursiops_truncatus
ENSVVUG00000013538UPF3A6148.366ENSUAMG00000024565UPF3B8841.060Ursus_americanus
ENSVVUG00000013538UPF3A7742.257ENSUMAG00000002150UPF3B8342.965Ursus_maritimus
ENSVVUG00000013538UPF3A8471.703ENSVPAG00000003525UPF3A9971.703Vicugna_pacos
ENSVVUG00000013538UPF3A8142.615ENSXETG00000007440upf3b7268.263Xenopus_tropicalis
ENSVVUG00000013538UPF3A7857.179ENSXETG00000002572upf3a9057.179Xenopus_tropicalis
ENSVVUG00000013538UPF3A8444.000ENSXMAG00000013452upf3a8457.107Xiphophorus_maculatus

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