EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000015268 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 77918 bases
Position: chrNBDQ01000032.1:14028892-14106809
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000020745	Ago_hook	PF10427.9	4.9e-22	1	1
ENSVVUP00000020743	Ago_hook	PF10427.9	4.9e-22	1	1
ENSVVUP00000020743	RRM_1	PF00076.22	0.00018	1	1
ENSVVUP00000020745	RRM_1	PF00076.22	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000027512	TNRC6C-201	5567	-	ENSVVUP00000020743	1673 (aa)	-	-
ENSVVUT00000027516	TNRC6C-202	5273	-	ENSVVUP00000020745	1684 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000015268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000015268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000015268	TNRC6C	89	49.881	ENSVVUG00000007064	TNRC6B	80	43.459
ENSVVUG00000015268	TNRC6C	95	63.736	ENSVVUG00000005380	TNRC6A	90	43.343

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000015268	TNRC6C	100	91.962	ENSG00000078687	TNRC6C	100	91.962	Homo_sapiens
ENSVVUG00000015268	TNRC6C	80	55.388	ENSAPOG00000019749	tnrc6c1	92	51.117	Acanthochromis_polyacanthus
ENSVVUG00000015268	TNRC6C	100	93.038	ENSAMEG00000013756	TNRC6C	96	92.775	Ailuropoda_melanoleuca
ENSVVUG00000015268	TNRC6C	91	53.217	ENSACIG00000008075	tnrc6c1	90	54.609	Amphilophus_citrinellus
ENSVVUG00000015268	TNRC6C	78	68.102	ENSAOCG00000023968	tnrc6c1	92	52.351	Amphiprion_ocellaris
ENSVVUG00000015268	TNRC6C	80	56.110	ENSAPEG00000009020	tnrc6c1	92	52.408	Amphiprion_percula
ENSVVUG00000015268	TNRC6C	100	84.576	ENSAPLG00000005456	TNRC6C	90	84.633	Anas_platyrhynchos
ENSVVUG00000015268	TNRC6C	100	85.284	ENSACAG00000016198	TNRC6C	88	85.284	Anolis_carolinensis
ENSVVUG00000015268	TNRC6C	100	91.307	ENSANAG00000021554	TNRC6C	100	91.248	Aotus_nancymaae
ENSVVUG00000015268	TNRC6C	82	52.120	ENSACLG00000000424	tnrc6c1	79	52.524	Astatotilapia_calliptera
ENSVVUG00000015268	TNRC6C	100	89.929	ENSBTAG00000018658	TNRC6C	100	90.284	Bos_taurus
ENSVVUG00000015268	TNRC6C	100	91.307	ENSCJAG00000019431	TNRC6C	100	91.307	Callithrix_jacchus
ENSVVUG00000015268	TNRC6C	100	97.330	ENSCAFG00000005224	TNRC6C	89	97.330	Canis_familiaris
ENSVVUG00000015268	TNRC6C	100	99.173	ENSCAFG00020006661	TNRC6C	100	98.457	Canis_lupus_dingo
ENSVVUG00000015268	TNRC6C	100	89.970	ENSCHIG00000026004	TNRC6C	100	89.665	Capra_hircus
ENSVVUG00000015268	TNRC6C	100	90.556	ENSTSYG00000005403	TNRC6C	100	90.556	Carlito_syrichta
ENSVVUG00000015268	TNRC6C	100	84.158	ENSCAPG00000007307	TNRC6C	89	84.484	Cavia_aperea
ENSVVUG00000015268	TNRC6C	100	89.686	ENSCPOG00000000467	TNRC6C	97	90.160	Cavia_porcellus
ENSVVUG00000015268	TNRC6C	100	91.898	ENSCCAG00000030524	TNRC6C	100	91.898	Cebus_capucinus
ENSVVUG00000015268	TNRC6C	100	91.780	ENSCATG00000033135	TNRC6C	100	91.780	Cercocebus_atys
ENSVVUG00000015268	TNRC6C	100	91.286	ENSCLAG00000011139	TNRC6C	89	91.405	Chinchilla_lanigera
ENSVVUG00000015268	TNRC6C	100	89.751	ENSCSAG00000005167	TNRC6C	89	89.809	Chlorocebus_sabaeus
ENSVVUG00000015268	TNRC6C	71	89.936	ENSCHOG00000000088	TNRC6C	68	89.677	Choloepus_hoffmanni
ENSVVUG00000015268	TNRC6C	100	88.033	ENSCPBG00000027960	TNRC6C	100	88.152	Chrysemys_picta_bellii
ENSVVUG00000015268	TNRC6C	100	91.543	ENSCANG00000041771	TNRC6C	100	91.543	Colobus_angolensis_palliatus
ENSVVUG00000015268	TNRC6C	100	89.033	ENSCGRG00001022686	Tnrc6c	100	87.913	Cricetulus_griseus_chok1gshd
ENSVVUG00000015268	TNRC6C	100	89.455	ENSCGRG00000018041	Tnrc6c	100	87.913	Cricetulus_griseus_crigri
ENSVVUG00000015268	TNRC6C	100	48.605	ENSCSEG00000012744	tnrc6c1	88	49.942	Cynoglossus_semilaevis
ENSVVUG00000015268	TNRC6C	94	55.441	ENSDARG00000076847	tnrc6c1	96	54.671	Danio_rerio
ENSVVUG00000015268	TNRC6C	100	90.221	ENSDNOG00000003247	TNRC6C	91	90.221	Dasypus_novemcinctus
ENSVVUG00000015268	TNRC6C	100	86.490	ENSDORG00000004558	Tnrc6c	100	86.077	Dipodomys_ordii
ENSVVUG00000015268	TNRC6C	90	82.404	ENSETEG00000005527	TNRC6C	87	82.404	Echinops_telfairi
ENSVVUG00000015268	TNRC6C	100	93.234	ENSEASG00005004799	TNRC6C	100	93.234	Equus_asinus_asinus
ENSVVUG00000015268	TNRC6C	100	93.234	ENSECAG00000012486	TNRC6C	90	93.234	Equus_caballus
ENSVVUG00000015268	TNRC6C	96	91.867	ENSEEUG00000010008	TNRC6C	93	91.867	Erinaceus_europaeus
ENSVVUG00000015268	TNRC6C	100	94.257	ENSFCAG00000028358	TNRC6C	100	94.257	Felis_catus
ENSVVUG00000015268	TNRC6C	100	83.768	ENSFALG00000000848	TNRC6C	100	83.995	Ficedula_albicollis
ENSVVUG00000015268	TNRC6C	100	90.812	ENSFDAG00000010368	TNRC6C	97	90.694	Fukomys_damarensis
ENSVVUG00000015268	TNRC6C	100	50.365	ENSFHEG00000002936	tnrc6c1	92	50.778	Fundulus_heteroclitus
ENSVVUG00000015268	TNRC6C	100	88.019	ENSGALG00000001725	TNRC6C	100	88.078	Gallus_gallus
ENSVVUG00000015268	TNRC6C	100	50.614	ENSGAFG00000019019	tnrc6c1	97	50.230	Gambusia_affinis
ENSVVUG00000015268	TNRC6C	80	53.934	ENSGACG00000012320	tnrc6c1	86	50.146	Gasterosteus_aculeatus
ENSVVUG00000015268	TNRC6C	100	87.567	ENSGAGG00000022043	TNRC6C	95	87.567	Gopherus_agassizii
ENSVVUG00000015268	TNRC6C	100	91.194	ENSGGOG00000011304	TNRC6C	100	91.135	Gorilla_gorilla
ENSVVUG00000015268	TNRC6C	96	51.750	ENSHBUG00000010846	tnrc6c1	96	53.074	Haplochromis_burtoni
ENSVVUG00000015268	TNRC6C	100	91.227	ENSHGLG00000004809	TNRC6C	89	91.168	Heterocephalus_glaber_female
ENSVVUG00000015268	TNRC6C	100	90.265	ENSHGLG00100012597	TNRC6C	89	90.501	Heterocephalus_glaber_male
ENSVVUG00000015268	TNRC6C	97	54.183	ENSIPUG00000000818	tnrc6c1	88	54.183	Ictalurus_punctatus
ENSVVUG00000015268	TNRC6C	100	90.112	ENSSTOG00000009101	TNRC6C	97	90.053	Ictidomys_tridecemlineatus
ENSVVUG00000015268	TNRC6C	100	88.561	ENSJJAG00000017055	Tnrc6c	89	88.502	Jaculus_jaculus
ENSVVUG00000015268	TNRC6C	100	49.942	ENSKMAG00000021023	tnrc6c1	97	50.654	Kryptolebias_marmoratus
ENSVVUG00000015268	TNRC6C	100	75.382	ENSLACG00000015283	TNRC6C	97	75.558	Latimeria_chalumnae
ENSVVUG00000015268	TNRC6C	98	76.692	ENSLOCG00000013377	tnrc6c1	83	75.639	Lepisosteus_oculatus
ENSVVUG00000015268	TNRC6C	100	91.435	ENSLAFG00000011122	TNRC6C	96	89.421	Loxodonta_africana
ENSVVUG00000015268	TNRC6C	100	91.839	ENSMFAG00000043943	TNRC6C	100	91.839	Macaca_fascicularis
ENSVVUG00000015268	TNRC6C	100	91.839	ENSMMUG00000011924	TNRC6C	100	91.839	Macaca_mulatta
ENSVVUG00000015268	TNRC6C	100	91.780	ENSMNEG00000030405	TNRC6C	100	91.780	Macaca_nemestrina
ENSVVUG00000015268	TNRC6C	100	91.780	ENSMLEG00000033436	TNRC6C	100	91.780	Mandrillus_leucophaeus
ENSVVUG00000015268	TNRC6C	94	56.000	ENSMAMG00000023613	tnrc6c1	97	52.504	Mastacembelus_armatus
ENSVVUG00000015268	TNRC6C	82	52.981	ENSMZEG00005010920	tnrc6c1	80	54.229	Maylandia_zebra
ENSVVUG00000015268	TNRC6C	100	78.283	ENSMGAG00000003906	TNRC6C	90	78.168	Meleagris_gallopavo
ENSVVUG00000015268	TNRC6C	100	88.620	ENSMAUG00000021618	Tnrc6c	100	88.620	Mesocricetus_auratus
ENSVVUG00000015268	TNRC6C	100	91.839	ENSMICG00000003952	TNRC6C	100	91.662	Microcebus_murinus
ENSVVUG00000015268	TNRC6C	100	90.936	ENSMOCG00000015879	Tnrc6c	97	90.758	Microtus_ochrogaster
ENSVVUG00000015268	TNRC6C	79	55.220	ENSMMOG00000005203	tnrc6c1	97	50.668	Mola_mola
ENSVVUG00000015268	TNRC6C	100	86.800	ENSMODG00000001785	TNRC6C	89	86.093	Monodelphis_domestica
ENSVVUG00000015268	TNRC6C	100	90.758	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	90.581	Mus_caroli
ENSVVUG00000015268	TNRC6C	100	90.284	ENSMUSG00000025571	Tnrc6c	97	90.107	Mus_musculus
ENSVVUG00000015268	TNRC6C	100	90.699	MGP_PahariEiJ_G0018593	Tnrc6c	97	90.521	Mus_pahari
ENSVVUG00000015268	TNRC6C	100	90.344	MGP_SPRETEiJ_G0018309	Tnrc6c	97	90.166	Mus_spretus
ENSVVUG00000015268	TNRC6C	100	92.281	ENSMPUG00000013348	TNRC6C	88	92.281	Mustela_putorius_furo
ENSVVUG00000015268	TNRC6C	100	83.841	ENSMLUG00000014431	TNRC6C	88	83.938	Myotis_lucifugus
ENSVVUG00000015268	TNRC6C	100	89.794	ENSNGAG00000012203	Tnrc6c	89	89.794	Nannospalax_galili
ENSVVUG00000015268	TNRC6C	82	53.108	ENSNBRG00000005344	tnrc6c1	80	52.865	Neolamprologus_brichardi
ENSVVUG00000015268	TNRC6C	100	87.147	ENSNLEG00000000047	TNRC6C	89	87.032	Nomascus_leucogenys
ENSVVUG00000015268	TNRC6C	97	80.848	ENSMEUG00000005104	TNRC6C	96	89.583	Notamacropus_eugenii
ENSVVUG00000015268	TNRC6C	100	90.931	ENSODEG00000012499	TNRC6C	100	91.108	Octodon_degus
ENSVVUG00000015268	TNRC6C	100	50.314	ENSONIG00000002210	tnrc6c1	96	54.769	Oreochromis_niloticus
ENSVVUG00000015268	TNRC6C	99	64.578	ENSOANG00000009758	-	84	66.625	Ornithorhynchus_anatinus
ENSVVUG00000015268	TNRC6C	100	49.385	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSVVUG00000015268	TNRC6C	100	50.363	ENSORLG00020016510	tnrc6c1	97	51.011	Oryzias_latipes_hni
ENSVVUG00000015268	TNRC6C	80	43.983	ENSORLG00015000171	tnrc6c1	94	46.298	Oryzias_latipes_hsok
ENSVVUG00000015268	TNRC6C	100	50.364	ENSOMEG00000000357	tnrc6c1	92	51.155	Oryzias_melastigma
ENSVVUG00000015268	TNRC6C	100	88.528	ENSOGAG00000007197	TNRC6C	100	88.586	Otolemur_garnettii
ENSVVUG00000015268	TNRC6C	96	86.139	ENSOARG00000006041	TNRC6C	87	86.245	Ovis_aries
ENSVVUG00000015268	TNRC6C	100	91.839	ENSPPAG00000027160	TNRC6C	100	91.839	Pan_paniscus
ENSVVUG00000015268	TNRC6C	100	94.316	ENSPPRG00000018881	TNRC6C	100	94.316	Panthera_pardus
ENSVVUG00000015268	TNRC6C	90	86.900	ENSPTIG00000008791	TNRC6C	70	79.556	Panthera_tigris_altaica
ENSVVUG00000015268	TNRC6C	100	91.839	ENSPTRG00000009699	TNRC6C	100	91.839	Pan_troglodytes
ENSVVUG00000015268	TNRC6C	100	92.002	ENSPANG00000019994	TNRC6C	100	92.002	Papio_anubis
ENSVVUG00000015268	TNRC6C	96	52.450	ENSPKIG00000005428	tnrc6c1	98	51.604	Paramormyrops_kingsleyae
ENSVVUG00000015268	TNRC6C	100	85.850	ENSPSIG00000018069	TNRC6C	97	85.790	Pelodiscus_sinensis
ENSVVUG00000015268	TNRC6C	74	57.505	ENSPMGG00000022911	tnrc6c1	97	63.158	Periophthalmus_magnuspinnatus
ENSVVUG00000015268	TNRC6C	100	90.212	ENSPEMG00000009785	Tnrc6c	100	87.441	Peromyscus_maniculatus_bairdii
ENSVVUG00000015268	TNRC6C	58	85.832	ENSPCIG00000017421	-	99	85.832	Phascolarctos_cinereus
ENSVVUG00000015268	TNRC6C	100	50.474	ENSPFOG00000012560	tnrc6c1	97	58.511	Poecilia_formosa
ENSVVUG00000015268	TNRC6C	97	51.474	ENSPLAG00000021055	tnrc6c1	97	51.300	Poecilia_latipinna
ENSVVUG00000015268	TNRC6C	100	90.272	ENSPPYG00000008679	TNRC6C	88	90.330	Pongo_abelii
ENSVVUG00000015268	TNRC6C	93	94.076	ENSPCAG00000012510	TNRC6C	91	94.076	Procavia_capensis
ENSVVUG00000015268	TNRC6C	100	92.608	ENSPCOG00000021451	TNRC6C	100	92.549	Propithecus_coquereli
ENSVVUG00000015268	TNRC6C	96	95.763	ENSPVAG00000002008	TNRC6C	93	95.763	Pteropus_vampyrus
ENSVVUG00000015268	TNRC6C	96	51.679	ENSPNYG00000014477	tnrc6c1	96	53.074	Pundamilia_nyererei
ENSVVUG00000015268	TNRC6C	100	90.000	ENSRNOG00000022395	Tnrc6c	100	89.882	Rattus_norvegicus
ENSVVUG00000015268	TNRC6C	100	91.721	ENSRBIG00000027777	TNRC6C	100	91.721	Rhinopithecus_bieti
ENSVVUG00000015268	TNRC6C	100	91.780	ENSRROG00000042912	TNRC6C	100	91.780	Rhinopithecus_roxellana
ENSVVUG00000015268	TNRC6C	100	88.998	ENSSBOG00000023981	TNRC6C	100	89.172	Saimiri_boliviensis_boliviensis
ENSVVUG00000015268	TNRC6C	52	86.782	ENSSHAG00000018330	-	100	86.024	Sarcophilus_harrisii
ENSVVUG00000015268	TNRC6C	92	55.283	ENSSFOG00015006475	tnrc6c1	92	51.730	Scleropages_formosus
ENSVVUG00000015268	TNRC6C	52	58.636	ENSSFOG00015004735	-	99	60.836	Scleropages_formosus
ENSVVUG00000015268	TNRC6C	100	49.416	ENSSMAG00000012761	tnrc6c1	99	50.954	Scophthalmus_maximus
ENSVVUG00000015268	TNRC6C	100	51.027	ENSSDUG00000002366	tnrc6c1	91	52.817	Seriola_dumerili
ENSVVUG00000015268	TNRC6C	100	49.608	ENSSLDG00000025613	tnrc6c1	97	51.094	Seriola_lalandi_dorsalis
ENSVVUG00000015268	TNRC6C	91	94.958	ENSSARG00000006816	TNRC6C	88	94.958	Sorex_araneus
ENSVVUG00000015268	TNRC6C	82	83.947	ENSSPUG00000007341	TNRC6C	91	83.947	Sphenodon_punctatus
ENSVVUG00000015268	TNRC6C	78	56.143	ENSSPAG00000014977	tnrc6c1	89	51.794	Stegastes_partitus
ENSVVUG00000015268	TNRC6C	100	87.604	ENSSSCG00000034373	TNRC6C	100	89.088	Sus_scrofa
ENSVVUG00000015268	TNRC6C	100	87.751	ENSTGUG00000007733	TNRC6C	97	87.988	Taeniopygia_guttata
ENSVVUG00000015268	TNRC6C	78	55.428	ENSTRUG00000011685	tnrc6c1	97	50.116	Takifugu_rubripes
ENSVVUG00000015268	TNRC6C	80	55.098	ENSTNIG00000005273	tnrc6c1	100	61.188	Tetraodon_nigroviridis
ENSVVUG00000015268	TNRC6C	64	89.453	ENSTBEG00000005046	TNRC6C	95	89.453	Tupaia_belangeri
ENSVVUG00000015268	TNRC6C	100	92.540	ENSTTRG00000010828	TNRC6C	97	92.599	Tursiops_truncatus
ENSVVUG00000015268	TNRC6C	100	95.336	ENSUMAG00000013614	TNRC6C	90	95.336	Ursus_maritimus
ENSVVUG00000015268	TNRC6C	52	83.771	ENSVPAG00000006765	-	100	83.771	Vicugna_pacos
ENSVVUG00000015268	TNRC6C	100	75.029	ENSXETG00000019470	tnrc6c	100	74.324	Xenopus_tropicalis
ENSVVUG00000015268	TNRC6C	100	50.403	ENSXMAG00000025971	tnrc6c1	97	50.058	Xiphophorus_maculatus