EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000020760 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 85845 bases
Position: chrNBDQ01000022.1:841538-927382
Accession: 20193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000028390	ResIII	PF04851.15	1.7e-10	1	1
ENSVVUP00000028388	ResIII	PF04851.15	1.1e-09	1	1
ENSVVUP00000028388	DEAD	PF00270.29	7.2e-27	1	1
ENSVVUP00000028390	DEAD	PF00270.29	1.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000037666	HFM1-201	3000	-	ENSVVUP00000028388	999 (aa)	-	-
ENSVVUT00000037669	HFM1-202	1434	-	ENSVVUP00000028390	477 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000020760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000020760's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000020760	HFM1	77	33.221	ENSVVUG00000026247	SNRNP200	83	31.611
ENSVVUG00000020760	HFM1	64	35.340	ENSVVUG00000015397	ASCC3	59	35.340

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000020760	HFM1	99	82.865	ENSG00000162669	HFM1	100	77.536	Homo_sapiens
ENSVVUG00000020760	HFM1	81	65.884	ENSAPOG00000005304	hfm1	91	65.884	Acanthochromis_polyacanthus
ENSVVUG00000020760	HFM1	99	86.654	ENSAMEG00000000432	HFM1	70	86.654	Ailuropoda_melanoleuca
ENSVVUG00000020760	HFM1	98	60.521	ENSACIG00000021553	hfm1	90	60.521	Amphilophus_citrinellus
ENSVVUG00000020760	HFM1	79	68.640	ENSAOCG00000022839	hfm1	96	68.640	Amphiprion_ocellaris
ENSVVUG00000020760	HFM1	79	68.687	ENSAPEG00000014316	hfm1	96	68.687	Amphiprion_percula
ENSVVUG00000020760	HFM1	98	57.743	ENSATEG00000019181	hfm1	91	56.963	Anabas_testudineus
ENSVVUG00000020760	HFM1	99	71.277	ENSAPLG00000013639	HFM1	70	71.277	Anas_platyrhynchos
ENSVVUG00000020760	HFM1	99	83.300	ENSANAG00000029513	HFM1	70	83.300	Aotus_nancymaae
ENSVVUG00000020760	HFM1	88	63.718	ENSACLG00000009033	hfm1	94	64.480	Astatotilapia_calliptera
ENSVVUG00000020760	HFM1	90	63.399	ENSAMXG00000006108	hfm1	75	58.494	Astyanax_mexicanus
ENSVVUG00000020760	HFM1	99	83.915	ENSBTAG00000020856	HFM1	70	83.915	Bos_taurus
ENSVVUG00000020760	HFM1	99	82.285	ENSCJAG00000001843	HFM1	71	82.285	Callithrix_jacchus
ENSVVUG00000020760	HFM1	96	97.380	ENSCAFG00000020187	HFM1	72	90.616	Canis_familiaris
ENSVVUG00000020760	HFM1	96	97.380	ENSCAFG00020013595	-	98	97.380	Canis_lupus_dingo
ENSVVUG00000020760	HFM1	94	73.904	ENSCHIG00000018623	-	97	73.904	Capra_hircus
ENSVVUG00000020760	HFM1	99	82.205	ENSTSYG00000014250	HFM1	71	82.205	Carlito_syrichta
ENSVVUG00000020760	HFM1	100	82.081	ENSCPOG00000007421	HFM1	72	82.081	Cavia_porcellus
ENSVVUG00000020760	HFM1	99	82.091	ENSCCAG00000033206	HFM1	71	82.091	Cebus_capucinus
ENSVVUG00000020760	HFM1	99	82.575	ENSCATG00000030987	HFM1	71	82.575	Cercocebus_atys
ENSVVUG00000020760	HFM1	99	83.017	ENSCLAG00000005173	HFM1	71	83.017	Chinchilla_lanigera
ENSVVUG00000020760	HFM1	60	95.376	ENSCHOG00000011824	-	50	95.376	Choloepus_hoffmanni
ENSVVUG00000020760	HFM1	69	53.212	ENSCSAVG00000005094	-	100	53.212	Ciona_savignyi
ENSVVUG00000020760	HFM1	96	82.571	ENSCANG00000034052	-	97	82.571	Colobus_angolensis_palliatus
ENSVVUG00000020760	HFM1	98	75.049	ENSCGRG00001016995	Hfm1	72	75.243	Cricetulus_griseus_chok1gshd
ENSVVUG00000020760	HFM1	99	77.907	ENSCGRG00000017181	Hfm1	71	78.101	Cricetulus_griseus_crigri
ENSVVUG00000020760	HFM1	97	66.541	ENSCSEG00000017659	hfm1	92	56.214	Cynoglossus_semilaevis
ENSVVUG00000020760	HFM1	71	68.820	ENSCVAG00000005075	hfm1	86	68.820	Cyprinodon_variegatus
ENSVVUG00000020760	HFM1	80	66.958	ENSDARG00000104288	hfm1	72	66.958	Danio_rerio
ENSVVUG00000020760	HFM1	99	81.552	ENSDNOG00000004776	HFM1	71	81.552	Dasypus_novemcinctus
ENSVVUG00000020760	HFM1	99	78.273	ENSDORG00000014661	Hfm1	71	78.273	Dipodomys_ordii
ENSVVUG00000020760	HFM1	52	55.731	ENSEBUG00000006133	-	86	67.883	Eptatretus_burgeri
ENSVVUG00000020760	HFM1	99	91.064	ENSEASG00005015424	HFM1	97	91.064	Equus_asinus_asinus
ENSVVUG00000020760	HFM1	99	85.917	ENSECAG00000024039	HFM1	71	85.917	Equus_caballus
ENSVVUG00000020760	HFM1	85	65.320	ENSELUG00000018944	hfm1	95	65.320	Esox_lucius
ENSVVUG00000020760	HFM1	99	86.074	ENSFCAG00000029116	HFM1	70	86.074	Felis_catus
ENSVVUG00000020760	HFM1	90	75.107	ENSFALG00000001781	HFM1	70	71.037	Ficedula_albicollis
ENSVVUG00000020760	HFM1	99	82.231	ENSFDAG00000020816	HFM1	71	82.231	Fukomys_damarensis
ENSVVUG00000020760	HFM1	90	59.448	ENSGMOG00000017436	hfm1	98	59.448	Gadus_morhua
ENSVVUG00000020760	HFM1	99	62.651	ENSGAFG00000018093	hfm1	95	62.651	Gambusia_affinis
ENSVVUG00000020760	HFM1	90	60.190	ENSGACG00000015686	hfm1	98	60.190	Gasterosteus_aculeatus
ENSVVUG00000020760	HFM1	52	89.362	ENSGAGG00000025197	-	73	89.362	Gopherus_agassizii
ENSVVUG00000020760	HFM1	99	82.865	ENSGGOG00000038524	HFM1	71	82.865	Gorilla_gorilla
ENSVVUG00000020760	HFM1	88	65.062	ENSHBUG00000007309	hfm1	95	59.335	Haplochromis_burtoni
ENSVVUG00000020760	HFM1	96	76.087	ENSHGLG00000007780	-	98	76.087	Heterocephalus_glaber_female
ENSVVUG00000020760	HFM1	96	73.978	ENSHGLG00100019217	-	98	73.978	Heterocephalus_glaber_male
ENSVVUG00000020760	HFM1	80	63.750	ENSHCOG00000019632	hfm1	95	63.750	Hippocampus_comes
ENSVVUG00000020760	HFM1	97	60.080	ENSIPUG00000017020	hfm1	89	64.994	Ictalurus_punctatus
ENSVVUG00000020760	HFM1	96	77.609	ENSSTOG00000008477	-	98	77.609	Ictidomys_tridecemlineatus
ENSVVUG00000020760	HFM1	91	83.881	ENSJJAG00000017198	Hfm1	67	83.881	Jaculus_jaculus
ENSVVUG00000020760	HFM1	84	63.751	ENSKMAG00000002282	hfm1	89	63.751	Kryptolebias_marmoratus
ENSVVUG00000020760	HFM1	99	59.296	ENSLBEG00000006759	hfm1	93	65.261	Labrus_bergylta
ENSVVUG00000020760	HFM1	99	64.027	ENSLACG00000010698	HFM1	99	64.122	Latimeria_chalumnae
ENSVVUG00000020760	HFM1	98	63.628	ENSLOCG00000004931	hfm1	93	63.725	Lepisosteus_oculatus
ENSVVUG00000020760	HFM1	65	91.298	ENSLAFG00000015903	-	88	91.298	Loxodonta_africana
ENSVVUG00000020760	HFM1	99	79.054	ENSMFAG00000003649	HFM1	70	79.054	Macaca_fascicularis
ENSVVUG00000020760	HFM1	99	82.478	ENSMMUG00000006819	HFM1	71	82.478	Macaca_mulatta
ENSVVUG00000020760	HFM1	96	81.481	ENSMNEG00000039833	-	97	81.481	Macaca_nemestrina
ENSVVUG00000020760	HFM1	96	82.789	ENSMLEG00000027571	-	97	82.789	Mandrillus_leucophaeus
ENSVVUG00000020760	HFM1	84	66.548	ENSMAMG00000004623	hfm1	95	66.255	Mastacembelus_armatus
ENSVVUG00000020760	HFM1	88	63.718	ENSMZEG00005004679	hfm1	94	64.480	Maylandia_zebra
ENSVVUG00000020760	HFM1	74	80.054	ENSMGAG00000008437	HFM1	93	80.054	Meleagris_gallopavo
ENSVVUG00000020760	HFM1	99	78.391	ENSMAUG00000018858	Hfm1	71	78.876	Mesocricetus_auratus
ENSVVUG00000020760	HFM1	99	82.852	ENSMICG00000037935	HFM1	70	82.852	Microcebus_murinus
ENSVVUG00000020760	HFM1	99	77.220	ENSMOCG00000014812	Hfm1	71	77.703	Microtus_ochrogaster
ENSVVUG00000020760	HFM1	84	65.755	ENSMMOG00000006148	hfm1	92	65.755	Mola_mola
ENSVVUG00000020760	HFM1	88	65.440	ENSMALG00000002401	hfm1	92	66.337	Monopterus_albus
ENSVVUG00000020760	HFM1	94	93.204	MGP_CAROLIEiJ_G0027496	Hfm1	97	66.581	Mus_caroli
ENSVVUG00000020760	HFM1	99	77.992	ENSMUSG00000043410	Hfm1	100	68.357	Mus_musculus
ENSVVUG00000020760	HFM1	99	77.703	MGP_PahariEiJ_G0017268	Hfm1	100	68.599	Mus_pahari
ENSVVUG00000020760	HFM1	99	77.703	MGP_SPRETEiJ_G0028495	Hfm1	100	68.357	Mus_spretus
ENSVVUG00000020760	HFM1	99	86.484	ENSMPUG00000004594	HFM1	71	86.484	Mustela_putorius_furo
ENSVVUG00000020760	HFM1	99	84.124	ENSMLUG00000010200	HFM1	70	84.124	Myotis_lucifugus
ENSVVUG00000020760	HFM1	88	60.606	ENSNBRG00000002910	hfm1	95	64.356	Neolamprologus_brichardi
ENSVVUG00000020760	HFM1	96	82.135	ENSNLEG00000010285	HFM1	70	77.264	Nomascus_leucogenys
ENSVVUG00000020760	HFM1	90	74.177	ENSMEUG00000015788	HFM1	64	74.177	Notamacropus_eugenii
ENSVVUG00000020760	HFM1	93	80.542	ENSOPRG00000013916	HFM1	64	80.542	Ochotona_princeps
ENSVVUG00000020760	HFM1	96	75.435	ENSODEG00000006243	-	98	75.435	Octodon_degus
ENSVVUG00000020760	HFM1	97	59.763	ENSONIG00000010590	hfm1	96	59.786	Oreochromis_niloticus
ENSVVUG00000020760	HFM1	81	71.134	ENSOCUG00000010974	-	95	71.134	Oryctolagus_cuniculus
ENSVVUG00000020760	HFM1	80	64.787	ENSORLG00000026844	hfm1	98	64.787	Oryzias_latipes
ENSVVUG00000020760	HFM1	89	55.069	ENSORLG00020002951	hfm1	75	54.883	Oryzias_latipes_hni
ENSVVUG00000020760	HFM1	98	57.498	ENSOMEG00000016474	hfm1	73	57.498	Oryzias_melastigma
ENSVVUG00000020760	HFM1	91	86.653	ENSOGAG00000032369	HFM1	77	86.653	Otolemur_garnettii
ENSVVUG00000020760	HFM1	99	83.430	ENSOARG00000015812	HFM1	71	83.430	Ovis_aries
ENSVVUG00000020760	HFM1	99	82.865	ENSPPAG00000024582	HFM1	76	82.865	Pan_paniscus
ENSVVUG00000020760	HFM1	99	86.254	ENSPPRG00000003270	HFM1	70	86.254	Panthera_pardus
ENSVVUG00000020760	HFM1	96	89.130	ENSPTIG00000018881	HFM1	70	86.060	Panthera_tigris_altaica
ENSVVUG00000020760	HFM1	99	82.769	ENSPTRG00000000948	HFM1	71	82.769	Pan_troglodytes
ENSVVUG00000020760	HFM1	99	82.478	ENSPANG00000009838	HFM1	71	82.478	Papio_anubis
ENSVVUG00000020760	HFM1	84	66.282	ENSPKIG00000003810	hfm1	92	67.920	Paramormyrops_kingsleyae
ENSVVUG00000020760	HFM1	81	64.808	ENSPMGG00000011059	hfm1	98	64.808	Periophthalmus_magnuspinnatus
ENSVVUG00000020760	HFM1	99	79.167	ENSPEMG00000022852	Hfm1	71	79.167	Peromyscus_maniculatus_bairdii
ENSVVUG00000020760	HFM1	99	73.560	ENSPCIG00000014233	HFM1	72	73.560	Phascolarctos_cinereus
ENSVVUG00000020760	HFM1	99	61.583	ENSPFOG00000017194	hfm1	99	61.680	Poecilia_formosa
ENSVVUG00000020760	HFM1	99	61.089	ENSPLAG00000000571	hfm1	90	61.089	Poecilia_latipinna
ENSVVUG00000020760	HFM1	99	61.659	ENSPMEG00000019475	hfm1	91	61.659	Poecilia_mexicana
ENSVVUG00000020760	HFM1	99	60.254	ENSPREG00000007803	hfm1	90	66.667	Poecilia_reticulata
ENSVVUG00000020760	HFM1	99	82.865	ENSPPYG00000001163	HFM1	71	82.865	Pongo_abelii
ENSVVUG00000020760	HFM1	96	66.522	ENSPCOG00000026252	-	98	66.522	Propithecus_coquereli
ENSVVUG00000020760	HFM1	96	78.214	ENSPVAG00000009713	HFM1	70	76.318	Pteropus_vampyrus
ENSVVUG00000020760	HFM1	88	63.606	ENSPNYG00000001795	hfm1	94	64.480	Pundamilia_nyererei
ENSVVUG00000020760	HFM1	81	67.445	ENSPNAG00000010865	hfm1	81	67.445	Pygocentrus_nattereri
ENSVVUG00000020760	HFM1	99	77.348	ENSRNOG00000023299	Hfm1	71	77.348	Rattus_norvegicus
ENSVVUG00000020760	HFM1	96	81.699	ENSRBIG00000033899	-	97	81.699	Rhinopithecus_bieti
ENSVVUG00000020760	HFM1	99	82.478	ENSRROG00000045569	HFM1	71	82.478	Rhinopithecus_roxellana
ENSVVUG00000020760	HFM1	91	85.896	ENSSBOG00000027456	HFM1	67	85.896	Saimiri_boliviensis_boliviensis
ENSVVUG00000020760	HFM1	95	60.259	ENSSHAG00000014616	-	66	85.862	Sarcophilus_harrisii
ENSVVUG00000020760	HFM1	91	63.120	ENSSFOG00015020129	hfm1	74	58.146	Scleropages_formosus
ENSVVUG00000020760	HFM1	84	65.398	ENSSMAG00000006907	hfm1	85	65.398	Scophthalmus_maximus
ENSVVUG00000020760	HFM1	81	65.675	ENSSDUG00000011424	hfm1	91	65.675	Seriola_dumerili
ENSVVUG00000020760	HFM1	81	65.594	ENSSLDG00000016386	hfm1	90	65.594	Seriola_lalandi_dorsalis
ENSVVUG00000020760	HFM1	81	65.553	ENSSARG00000009598	-	99	65.553	Sorex_araneus
ENSVVUG00000020760	HFM1	77	89.362	ENSSPUG00000003380	-	88	89.362	Sphenodon_punctatus
ENSVVUG00000020760	HFM1	90	62.500	ENSSPAG00000001023	hfm1	91	66.419	Stegastes_partitus
ENSVVUG00000020760	HFM1	99	84.061	ENSSSCG00000006912	HFM1	77	84.061	Sus_scrofa
ENSVVUG00000020760	HFM1	90	74.098	ENSTGUG00000006172	HFM1	98	74.098	Taeniopygia_guttata
ENSVVUG00000020760	HFM1	81	73.265	ENSTBEG00000017533	-	99	73.265	Tupaia_belangeri
ENSVVUG00000020760	HFM1	99	84.323	ENSTTRG00000013933	HFM1	71	84.323	Tursiops_truncatus
ENSVVUG00000020760	HFM1	97	79.785	ENSUAMG00000008754	-	99	85.799	Ursus_americanus
ENSVVUG00000020760	HFM1	96	88.696	ENSUMAG00000001345	-	98	88.696	Ursus_maritimus
ENSVVUG00000020760	HFM1	99	81.492	ENSVPAG00000011331	HFM1	71	81.492	Vicugna_pacos
ENSVVUG00000020760	HFM1	80	67.669	ENSXMAG00000004178	hfm1	89	67.669	Xiphophorus_maculatus