EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000021727 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 239956 bases
Position: chrNBDQ01000122.1:5392992-5632947
Accession: 112933099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000029765	EST1	PF10374.9	4.6e-15	1	1
ENSVVUP00000029760	EST1	PF10374.9	5.1e-15	1	1
ENSVVUP00000029765	EST1_DNA_bind	PF10373.9	1.6e-60	1	1
ENSVVUP00000029760	EST1_DNA_bind	PF10373.9	3.6e-57	1	1
ENSVVUP00000029765	PIN_4	PF13638.6	5.6e-21	1	1
ENSVVUP00000029760	PIN_4	PF13638.6	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000039536	SMG6-202	4239	-	ENSVVUP00000029765	1412 (aa)	XP_025871944	UPI000DF6F130
ENSVVUT00000039526	SMG6-201	4059	-	ENSVVUP00000029760	1352 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000021727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000021727's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000021727	SMG6	100	92.600	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSVVUG00000021727	SMG6	83	55.294	ENSAPOG00000019448	smg6	74	55.949	Acanthochromis_polyacanthus
ENSVVUG00000021727	SMG6	100	96.540	ENSAMEG00000007632	SMG6	100	96.540	Ailuropoda_melanoleuca
ENSVVUG00000021727	SMG6	83	54.811	ENSAOCG00000002630	smg6	74	55.805	Amphiprion_ocellaris
ENSVVUG00000021727	SMG6	83	54.968	ENSAPEG00000019101	smg6	74	55.965	Amphiprion_percula
ENSVVUG00000021727	SMG6	84	55.044	ENSATEG00000006483	smg6	76	53.713	Anabas_testudineus
ENSVVUG00000021727	SMG6	86	58.669	ENSACAG00000011783	SMG6	99	58.517	Anolis_carolinensis
ENSVVUG00000021727	SMG6	100	92.741	ENSANAG00000035760	SMG6	100	92.741	Aotus_nancymaae
ENSVVUG00000021727	SMG6	74	59.851	ENSACLG00000005288	smg6	80	56.400	Astatotilapia_calliptera
ENSVVUG00000021727	SMG6	74	62.415	ENSAMXG00000017326	smg6	98	51.714	Astyanax_mexicanus
ENSVVUG00000021727	SMG6	100	94.197	ENSBTAG00000000267	SMG6	100	94.197	Bos_taurus
ENSVVUG00000021727	SMG6	100	92.389	ENSCJAG00000001820	SMG6	100	92.389	Callithrix_jacchus
ENSVVUG00000021727	SMG6	100	99.575	ENSCAFG00000019260	SMG6	100	99.575	Canis_familiaris
ENSVVUG00000021727	SMG6	100	99.575	ENSCAFG00020009770	SMG6	100	99.575	Canis_lupus_dingo
ENSVVUG00000021727	SMG6	100	93.701	ENSCHIG00000021998	SMG6	100	93.701	Capra_hircus
ENSVVUG00000021727	SMG6	100	92.741	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSVVUG00000021727	SMG6	98	77.361	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSVVUG00000021727	SMG6	100	90.634	ENSCPOG00000014878	SMG6	100	90.634	Cavia_porcellus
ENSVVUG00000021727	SMG6	100	92.671	ENSCCAG00000035801	SMG6	100	92.671	Cebus_capucinus
ENSVVUG00000021727	SMG6	100	92.812	ENSCATG00000031956	SMG6	100	92.812	Cercocebus_atys
ENSVVUG00000021727	SMG6	100	92.107	ENSCLAG00000006748	SMG6	100	92.107	Chinchilla_lanigera
ENSVVUG00000021727	SMG6	100	93.235	ENSCSAG00000013800	SMG6	100	93.235	Chlorocebus_sabaeus
ENSVVUG00000021727	SMG6	52	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSVVUG00000021727	SMG6	100	72.639	ENSCPBG00000020369	SMG6	100	73.194	Chrysemys_picta_bellii
ENSVVUG00000021727	SMG6	98	93.141	ENSCANG00000031764	SMG6	100	96.673	Colobus_angolensis_palliatus
ENSVVUG00000021727	SMG6	55	87.420	ENSCGRG00001019595	Smg6	97	87.420	Cricetulus_griseus_chok1gshd
ENSVVUG00000021727	SMG6	98	84.549	ENSCGRG00000007782	Smg6	99	84.693	Cricetulus_griseus_crigri
ENSVVUG00000021727	SMG6	87	54.688	ENSCSEG00000012757	smg6	80	55.170	Cynoglossus_semilaevis
ENSVVUG00000021727	SMG6	78	56.119	ENSCVAG00000012789	smg6	74	54.735	Cyprinodon_variegatus
ENSVVUG00000021727	SMG6	100	50.034	ENSDARG00000100481	smg6	89	55.687	Danio_rerio
ENSVVUG00000021727	SMG6	100	93.164	ENSDNOG00000048283	SMG6	100	93.164	Dasypus_novemcinctus
ENSVVUG00000021727	SMG6	100	88.772	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSVVUG00000021727	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSVVUG00000021727	SMG6	69	52.681	ENSEBUG00000005059	smg6	71	50.048	Eptatretus_burgeri
ENSVVUG00000021727	SMG6	99	95.535	ENSEASG00005009318	SMG6	99	95.535	Equus_asinus_asinus
ENSVVUG00000021727	SMG6	99	95.252	ENSECAG00000006519	SMG6	99	95.252	Equus_caballus
ENSVVUG00000021727	SMG6	100	83.227	ENSEEUG00000003493	SMG6	100	83.227	Erinaceus_europaeus
ENSVVUG00000021727	SMG6	74	60.335	ENSELUG00000005934	smg6	67	56.763	Esox_lucius
ENSVVUG00000021727	SMG6	100	96.957	ENSFCAG00000028817	SMG6	100	96.957	Felis_catus
ENSVVUG00000021727	SMG6	99	72.086	ENSFALG00000006538	SMG6	99	72.611	Ficedula_albicollis
ENSVVUG00000021727	SMG6	100	91.825	ENSFDAG00000015106	SMG6	100	91.825	Fukomys_damarensis
ENSVVUG00000021727	SMG6	84	53.662	ENSFHEG00000013282	smg6	75	53.994	Fundulus_heteroclitus
ENSVVUG00000021727	SMG6	55	69.159	ENSGMOG00000019077	smg6	58	69.159	Gadus_morhua
ENSVVUG00000021727	SMG6	100	72.211	ENSGALG00000003108	SMG6	98	72.280	Gallus_gallus
ENSVVUG00000021727	SMG6	84	54.451	ENSGAFG00000000379	smg6	74	54.699	Gambusia_affinis
ENSVVUG00000021727	SMG6	92	54.290	ENSGACG00000020521	smg6	99	53.986	Gasterosteus_aculeatus
ENSVVUG00000021727	SMG6	99	71.685	ENSGAGG00000025617	SMG6	99	73.006	Gopherus_agassizii
ENSVVUG00000021727	SMG6	100	93.517	ENSGGOG00000017156	SMG6	100	93.517	Gorilla_gorilla
ENSVVUG00000021727	SMG6	84	55.369	ENSHBUG00000021311	smg6	74	56.490	Haplochromis_burtoni
ENSVVUG00000021727	SMG6	100	91.485	ENSHGLG00000012882	SMG6	100	91.485	Heterocephalus_glaber_female
ENSVVUG00000021727	SMG6	100	91.555	ENSHGLG00100017815	SMG6	100	91.555	Heterocephalus_glaber_male
ENSVVUG00000021727	SMG6	74	59.462	ENSHCOG00000008761	smg6	97	53.902	Hippocampus_comes
ENSVVUG00000021727	SMG6	89	53.946	ENSIPUG00000012493	smg6	81	53.677	Ictalurus_punctatus
ENSVVUG00000021727	SMG6	100	93.371	ENSSTOG00000028127	SMG6	100	93.371	Ictidomys_tridecemlineatus
ENSVVUG00000021727	SMG6	79	88.839	ENSJJAG00000015367	Smg6	95	86.904	Jaculus_jaculus
ENSVVUG00000021727	SMG6	89	54.072	ENSKMAG00000000279	smg6	79	54.297	Kryptolebias_marmoratus
ENSVVUG00000021727	SMG6	87	54.290	ENSLBEG00000002184	smg6	75	54.461	Labrus_bergylta
ENSVVUG00000021727	SMG6	56	57.862	ENSLACG00000000806	-	98	58.714	Latimeria_chalumnae
ENSVVUG00000021727	SMG6	77	65.028	ENSLOCG00000006448	smg6	99	55.657	Lepisosteus_oculatus
ENSVVUG00000021727	SMG6	100	93.094	ENSLAFG00000001261	SMG6	100	93.094	Loxodonta_africana
ENSVVUG00000021727	SMG6	100	93.376	ENSMFAG00000003394	SMG6	100	93.376	Macaca_fascicularis
ENSVVUG00000021727	SMG6	100	93.305	ENSMMUG00000023161	SMG6	100	93.305	Macaca_mulatta
ENSVVUG00000021727	SMG6	100	88.405	ENSMNEG00000044592	SMG6	100	88.405	Macaca_nemestrina
ENSVVUG00000021727	SMG6	93	96.805	ENSMLEG00000029353	SMG6	99	96.805	Mandrillus_leucophaeus
ENSVVUG00000021727	SMG6	84	56.185	ENSMAMG00000020119	smg6	79	56.355	Mastacembelus_armatus
ENSVVUG00000021727	SMG6	74	59.833	ENSMZEG00005024736	smg6	74	56.320	Maylandia_zebra
ENSVVUG00000021727	SMG6	73	66.856	ENSMGAG00000005401	-	99	66.856	Meleagris_gallopavo
ENSVVUG00000021727	SMG6	100	94.574	ENSMICG00000012913	SMG6	100	94.574	Microcebus_murinus
ENSVVUG00000021727	SMG6	100	48.165	ENSMMOG00000010883	smg6	100	48.218	Mola_mola
ENSVVUG00000021727	SMG6	100	86.146	ENSMODG00000010622	SMG6	100	86.146	Monodelphis_domestica
ENSVVUG00000021727	SMG6	84	55.635	ENSMALG00000001106	smg6	73	55.962	Monopterus_albus
ENSVVUG00000021727	SMG6	100	90.839	MGP_CAROLIEiJ_G0016729	Smg6	100	90.839	Mus_caroli
ENSVVUG00000021727	SMG6	100	90.557	ENSMUSG00000038290	Smg6	100	90.557	Mus_musculus
ENSVVUG00000021727	SMG6	100	90.480	MGP_PahariEiJ_G0017866	Smg6	100	90.480	Mus_pahari
ENSVVUG00000021727	SMG6	100	90.486	MGP_SPRETEiJ_G0017572	Smg6	100	90.486	Mus_spretus
ENSVVUG00000021727	SMG6	100	96.815	ENSMPUG00000013046	SMG6	100	96.815	Mustela_putorius_furo
ENSVVUG00000021727	SMG6	100	94.268	ENSMLUG00000005739	SMG6	100	94.268	Myotis_lucifugus
ENSVVUG00000021727	SMG6	98	90.462	ENSNGAG00000007287	Smg6	99	90.462	Nannospalax_galili
ENSVVUG00000021727	SMG6	84	54.524	ENSNBRG00000009511	smg6	81	55.556	Neolamprologus_brichardi
ENSVVUG00000021727	SMG6	98	92.826	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
ENSVVUG00000021727	SMG6	98	82.565	ENSMEUG00000015804	SMG6	99	82.565	Notamacropus_eugenii
ENSVVUG00000021727	SMG6	64	90.498	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSVVUG00000021727	SMG6	100	85.151	ENSODEG00000008038	SMG6	100	85.151	Octodon_degus
ENSVVUG00000021727	SMG6	100	51.037	ENSONIG00000005594	smg6	100	52.101	Oreochromis_niloticus
ENSVVUG00000021727	SMG6	100	92.681	ENSOCUG00000013018	SMG6	100	92.822	Oryctolagus_cuniculus
ENSVVUG00000021727	SMG6	85	54.589	ENSORLG00000003317	smg6	74	55.109	Oryzias_latipes
ENSVVUG00000021727	SMG6	85	54.545	ENSORLG00020015343	smg6	74	54.662	Oryzias_latipes_hni
ENSVVUG00000021727	SMG6	85	53.987	ENSORLG00015020454	smg6	74	54.839	Oryzias_latipes_hsok
ENSVVUG00000021727	SMG6	84	54.069	ENSOMEG00000010838	smg6	75	54.553	Oryzias_melastigma
ENSVVUG00000021727	SMG6	100	93.803	ENSOGAG00000004483	SMG6	100	93.803	Otolemur_garnettii
ENSVVUG00000021727	SMG6	100	92.167	ENSOARG00000015076	SMG6	100	93.632	Ovis_aries
ENSVVUG00000021727	SMG6	100	93.376	ENSPPAG00000043296	SMG6	100	93.376	Pan_paniscus
ENSVVUG00000021727	SMG6	100	97.028	ENSPPRG00000014581	SMG6	100	97.028	Panthera_pardus
ENSVVUG00000021727	SMG6	98	96.963	ENSPTIG00000008925	SMG6	100	99.022	Panthera_tigris_altaica
ENSVVUG00000021727	SMG6	100	93.446	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSVVUG00000021727	SMG6	100	93.164	ENSPANG00000024588	SMG6	100	93.164	Papio_anubis
ENSVVUG00000021727	SMG6	90	70.149	ENSPSIG00000006660	SMG6	96	71.104	Pelodiscus_sinensis
ENSVVUG00000021727	SMG6	98	60.870	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSVVUG00000021727	SMG6	100	91.755	ENSPEMG00000020707	Smg6	100	91.755	Peromyscus_maniculatus_bairdii
ENSVVUG00000021727	SMG6	100	51.745	ENSPFOG00000012035	smg6	100	51.615	Poecilia_formosa
ENSVVUG00000021727	SMG6	84	55.145	ENSPLAG00000017660	smg6	74	55.072	Poecilia_latipinna
ENSVVUG00000021727	SMG6	78	57.493	ENSPMEG00000000258	smg6	74	55.395	Poecilia_mexicana
ENSVVUG00000021727	SMG6	84	54.948	ENSPREG00000010066	smg6	74	54.831	Poecilia_reticulata
ENSVVUG00000021727	SMG6	100	88.256	ENSPPYG00000007790	SMG6	100	88.256	Pongo_abelii
ENSVVUG00000021727	SMG6	100	88.584	ENSPCAG00000000552	SMG6	100	88.584	Procavia_capensis
ENSVVUG00000021727	SMG6	100	94.080	ENSPCOG00000020925	SMG6	100	94.080	Propithecus_coquereli
ENSVVUG00000021727	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSVVUG00000021727	SMG6	84	56.741	ENSPNYG00000024151	smg6	79	58.347	Pundamilia_nyererei
ENSVVUG00000021727	SMG6	99	48.777	ENSPNAG00000015480	smg6	87	63.538	Pygocentrus_nattereri
ENSVVUG00000021727	SMG6	100	90.909	ENSRNOG00000003041	Smg6	100	90.909	Rattus_norvegicus
ENSVVUG00000021727	SMG6	100	93.235	ENSRBIG00000024746	SMG6	100	93.235	Rhinopithecus_bieti
ENSVVUG00000021727	SMG6	100	93.305	ENSRROG00000030423	SMG6	100	96.282	Rhinopithecus_roxellana
ENSVVUG00000021727	SMG6	100	92.812	ENSSBOG00000022518	SMG6	100	91.121	Saimiri_boliviensis_boliviensis
ENSVVUG00000021727	SMG6	99	85.347	ENSSHAG00000010045	SMG6	98	85.347	Sarcophilus_harrisii
ENSVVUG00000021727	SMG6	74	62.652	ENSSFOG00015005436	smg6	70	58.220	Scleropages_formosus
ENSVVUG00000021727	SMG6	89	54.113	ENSSMAG00000019777	smg6	78	53.146	Scophthalmus_maximus
ENSVVUG00000021727	SMG6	84	55.276	ENSSDUG00000016412	smg6	74	56.000	Seriola_dumerili
ENSVVUG00000021727	SMG6	81	54.330	ENSSLDG00000020747	smg6	77	55.066	Seriola_lalandi_dorsalis
ENSVVUG00000021727	SMG6	99	70.448	ENSSPUG00000007152	SMG6	99	70.378	Sphenodon_punctatus
ENSVVUG00000021727	SMG6	84	54.867	ENSSPAG00000015633	smg6	74	55.430	Stegastes_partitus
ENSVVUG00000021727	SMG6	100	94.413	ENSSSCG00000017826	SMG6	100	94.413	Sus_scrofa
ENSVVUG00000021727	SMG6	100	72.651	ENSTGUG00000005836	SMG6	100	72.791	Taeniopygia_guttata
ENSVVUG00000021727	SMG6	84	55.951	ENSTRUG00000000358	smg6	81	56.440	Takifugu_rubripes
ENSVVUG00000021727	SMG6	100	50.274	ENSTNIG00000016164	smg6	100	50.066	Tetraodon_nigroviridis
ENSVVUG00000021727	SMG6	100	88.513	ENSTBEG00000011424	SMG6	100	88.513	Tupaia_belangeri
ENSVVUG00000021727	SMG6	91	92.273	ENSTTRG00000001175	SMG6	91	92.273	Tursiops_truncatus
ENSVVUG00000021727	SMG6	100	96.822	ENSUAMG00000025152	SMG6	100	96.822	Ursus_americanus
ENSVVUG00000021727	SMG6	98	97.033	ENSUMAG00000009306	SMG6	100	97.033	Ursus_maritimus
ENSVVUG00000021727	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSVVUG00000021727	SMG6	99	59.514	ENSXETG00000023799	SMG6	99	59.685	Xenopus_tropicalis
ENSVVUG00000021727	SMG6	84	55.629	ENSXCOG00000009867	smg6	74	55.610	Xiphophorus_couchianus
ENSVVUG00000021727	SMG6	84	55.012	ENSXMAG00000010321	smg6	74	54.940	Xiphophorus_maculatus