EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000023397 (Gene tree)
Gene ID: -
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 27757 bases
Position: chrNBDQ01000085.1:4541023-4568779
Accession: 112929059
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000032228	zf-C2H2	PF00096.26	4.5e-19	1	2
ENSVVUP00000032228	zf-C2H2	PF00096.26	4.5e-19	2	2
ENSVVUP00000032228	zf-met	PF12874.7	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000042709	PRDM4-201	4158	XM_026010940	ENSVVUP00000032228	801 (aa)	XP_025866725	UPI00005A2127

Gene Model

Click here to download ENSVVUG00000023397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000023397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000023397	PRDM4	54	33.471	ENSVVUG00000016527	PRDM15	58	33.471

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000023397	PRDM4	100	97.378	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSVVUG00000023397	PRDM4	99	98.498	ENSAMEG00000016174	PRDM4	99	98.498	Ailuropoda_melanoleuca
ENSVVUG00000023397	PRDM4	99	88.095	ENSAPLG00000009846	PRDM4	99	87.594	Anas_platyrhynchos
ENSVVUG00000023397	PRDM4	100	97.253	ENSANAG00000024800	PRDM4	100	97.253	Aotus_nancymaae
ENSVVUG00000023397	PRDM4	100	97.878	ENSBTAG00000012999	PRDM4	100	97.878	Bos_taurus
ENSVVUG00000023397	PRDM4	100	97.004	ENSCJAG00000015261	PRDM4	100	97.004	Callithrix_jacchus
ENSVVUG00000023397	PRDM4	100	100.000	ENSCAFG00000001788	PRDM4	100	100.000	Canis_familiaris
ENSVVUG00000023397	PRDM4	100	100.000	ENSCAFG00020004916	PRDM4	100	100.000	Canis_lupus_dingo
ENSVVUG00000023397	PRDM4	100	97.628	ENSCHIG00000019409	PRDM4	100	97.628	Capra_hircus
ENSVVUG00000023397	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSVVUG00000023397	PRDM4	99	90.989	ENSCAPG00000013937	PRDM4	99	91.489	Cavia_aperea
ENSVVUG00000023397	PRDM4	99	90.932	ENSCPOG00000022385	PRDM4	100	90.932	Cavia_porcellus
ENSVVUG00000023397	PRDM4	100	97.378	ENSCCAG00000036033	PRDM4	100	97.378	Cebus_capucinus
ENSVVUG00000023397	PRDM4	100	97.004	ENSCATG00000044797	PRDM4	100	97.004	Cercocebus_atys
ENSVVUG00000023397	PRDM4	99	93.159	ENSCLAG00000007545	PRDM4	100	93.408	Chinchilla_lanigera
ENSVVUG00000023397	PRDM4	100	97.253	ENSCSAG00000002896	PRDM4	100	97.253	Chlorocebus_sabaeus
ENSVVUG00000023397	PRDM4	71	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSVVUG00000023397	PRDM4	99	88.833	ENSCPBG00000023187	PRDM4	100	88.331	Chrysemys_picta_bellii
ENSVVUG00000023397	PRDM4	100	97.129	ENSCANG00000021804	PRDM4	100	97.129	Colobus_angolensis_palliatus
ENSVVUG00000023397	PRDM4	99	92.537	ENSCGRG00001015102	-	100	92.289	Cricetulus_griseus_chok1gshd
ENSVVUG00000023397	PRDM4	96	92.516	ENSCGRG00000004044	-	100	92.258	Cricetulus_griseus_crigri
ENSVVUG00000023397	PRDM4	100	96.380	ENSDNOG00000032478	PRDM4	100	96.418	Dasypus_novemcinctus
ENSVVUG00000023397	PRDM4	99	81.179	ENSDORG00000015081	-	100	81.305	Dipodomys_ordii
ENSVVUG00000023397	PRDM4	93	45.938	ENSEBUG00000003775	prdm4	99	46.335	Eptatretus_burgeri
ENSVVUG00000023397	PRDM4	100	98.002	ENSECAG00000015423	PRDM4	100	98.002	Equus_caballus
ENSVVUG00000023397	PRDM4	94	93.475	ENSEEUG00000006569	PRDM4	99	93.209	Erinaceus_europaeus
ENSVVUG00000023397	PRDM4	99	60.510	ENSELUG00000015265	prdm4	93	62.078	Esox_lucius
ENSVVUG00000023397	PRDM4	100	99.001	ENSFCAG00000022478	PRDM4	100	99.001	Felis_catus
ENSVVUG00000023397	PRDM4	99	88.206	ENSFALG00000013342	PRDM4	100	87.829	Ficedula_albicollis
ENSVVUG00000023397	PRDM4	100	87.796	ENSGALG00000012619	PRDM4	100	87.298	Gallus_gallus
ENSVVUG00000023397	PRDM4	99	88.471	ENSGAGG00000002763	PRDM4	95	87.970	Gopherus_agassizii
ENSVVUG00000023397	PRDM4	99	97.250	ENSGGOG00000001244	PRDM4	99	97.250	Gorilla_gorilla
ENSVVUG00000023397	PRDM4	99	93.977	ENSHGLG00000004590	PRDM4	98	93.601	Heterocephalus_glaber_female
ENSVVUG00000023397	PRDM4	99	92.919	ENSHGLG00100007464	PRDM4	100	92.547	Heterocephalus_glaber_male
ENSVVUG00000023397	PRDM4	95	60.751	ENSIPUG00000024162	prdm4	93	61.097	Ictalurus_punctatus
ENSVVUG00000023397	PRDM4	100	96.879	ENSSTOG00000016168	PRDM4	100	96.879	Ictidomys_tridecemlineatus
ENSVVUG00000023397	PRDM4	82	93.011	ENSJJAG00000022448	-	95	93.011	Jaculus_jaculus
ENSVVUG00000023397	PRDM4	99	73.144	ENSLACG00000007452	PRDM4	99	73.886	Latimeria_chalumnae
ENSVVUG00000023397	PRDM4	78	53.247	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSVVUG00000023397	PRDM4	98	97.208	ENSLAFG00000001483	PRDM4	100	97.208	Loxodonta_africana
ENSVVUG00000023397	PRDM4	100	97.378	ENSMFAG00000041862	PRDM4	100	97.378	Macaca_fascicularis
ENSVVUG00000023397	PRDM4	100	97.378	ENSMMUG00000015550	PRDM4	100	97.378	Macaca_mulatta
ENSVVUG00000023397	PRDM4	100	97.129	ENSMNEG00000032319	PRDM4	100	97.129	Macaca_nemestrina
ENSVVUG00000023397	PRDM4	100	97.253	ENSMLEG00000039607	PRDM4	100	97.253	Mandrillus_leucophaeus
ENSVVUG00000023397	PRDM4	99	80.500	ENSMGAG00000012815	PRDM4	100	80.000	Meleagris_gallopavo
ENSVVUG00000023397	PRDM4	100	96.380	ENSMICG00000007807	PRDM4	100	96.380	Microcebus_murinus
ENSVVUG00000023397	PRDM4	99	93.484	ENSMOCG00000000753	Prdm4	99	93.233	Microtus_ochrogaster
ENSVVUG00000023397	PRDM4	99	94.103	ENSMUSG00000035529	Prdm4	100	93.852	Mus_musculus
ENSVVUG00000023397	PRDM4	99	93.726	MGP_PahariEiJ_G0031398	Prdm4	100	93.774	Mus_pahari
ENSVVUG00000023397	PRDM4	99	94.856	MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	Mus_spretus
ENSVVUG00000023397	PRDM4	99	92.394	ENSMPUG00000012238	PRDM4	99	92.394	Mustela_putorius_furo
ENSVVUG00000023397	PRDM4	99	97.494	ENSMLUG00000000767	PRDM4	99	97.494	Myotis_lucifugus
ENSVVUG00000023397	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSVVUG00000023397	PRDM4	100	97.253	ENSNLEG00000006748	PRDM4	100	97.253	Nomascus_leucogenys
ENSVVUG00000023397	PRDM4	89	89.671	ENSMEUG00000004495	PRDM4	89	89.671	Notamacropus_eugenii
ENSVVUG00000023397	PRDM4	88	95.536	ENSOPRG00000010192	PRDM4	89	95.536	Ochotona_princeps
ENSVVUG00000023397	PRDM4	99	91.125	ENSODEG00000014750	PRDM4	99	91.000	Octodon_degus
ENSVVUG00000023397	PRDM4	100	91.011	ENSOANG00000005526	PRDM4	100	91.011	Ornithorhynchus_anatinus
ENSVVUG00000023397	PRDM4	93	97.282	ENSOCUG00000012859	PRDM4	96	97.282	Oryctolagus_cuniculus
ENSVVUG00000023397	PRDM4	99	97.616	ENSOGAG00000011945	PRDM4	100	97.616	Otolemur_garnettii
ENSVVUG00000023397	PRDM4	100	97.503	ENSOARG00000017955	PRDM4	100	97.503	Ovis_aries
ENSVVUG00000023397	PRDM4	100	97.378	ENSPPAG00000038438	PRDM4	100	97.378	Pan_paniscus
ENSVVUG00000023397	PRDM4	100	99.001	ENSPPRG00000004144	PRDM4	100	99.001	Panthera_pardus
ENSVVUG00000023397	PRDM4	100	99.001	ENSPTIG00000005847	PRDM4	100	99.001	Panthera_tigris_altaica
ENSVVUG00000023397	PRDM4	100	97.378	ENSPTRG00000005400	PRDM4	100	97.378	Pan_troglodytes
ENSVVUG00000023397	PRDM4	100	97.378	ENSPANG00000022084	PRDM4	100	97.378	Papio_anubis
ENSVVUG00000023397	PRDM4	99	60.285	ENSPKIG00000000875	prdm4	99	60.285	Paramormyrops_kingsleyae
ENSVVUG00000023397	PRDM4	91	81.939	ENSPSIG00000012066	PRDM4	100	81.939	Pelodiscus_sinensis
ENSVVUG00000023397	PRDM4	99	95.232	ENSPEMG00000014598	Prdm4	100	95.232	Peromyscus_maniculatus_bairdii
ENSVVUG00000023397	PRDM4	100	89.303	ENSPCIG00000009471	PRDM4	100	89.303	Phascolarctos_cinereus
ENSVVUG00000023397	PRDM4	100	97.503	ENSPPYG00000004913	PRDM4	100	97.503	Pongo_abelii
ENSVVUG00000023397	PRDM4	83	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSVVUG00000023397	PRDM4	100	96.255	ENSPCOG00000021060	PRDM4	100	96.255	Propithecus_coquereli
ENSVVUG00000023397	PRDM4	100	97.257	ENSPVAG00000001596	PRDM4	100	97.257	Pteropus_vampyrus
ENSVVUG00000023397	PRDM4	99	93.985	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSVVUG00000023397	PRDM4	100	97.129	ENSRBIG00000035488	PRDM4	100	97.129	Rhinopithecus_bieti
ENSVVUG00000023397	PRDM4	100	97.253	ENSRROG00000012779	PRDM4	100	97.253	Rhinopithecus_roxellana
ENSVVUG00000023397	PRDM4	100	97.253	ENSSBOG00000000403	PRDM4	100	97.253	Saimiri_boliviensis_boliviensis
ENSVVUG00000023397	PRDM4	99	63.793	ENSSFOG00015023358	prdm4	99	63.255	Scleropages_formosus
ENSVVUG00000023397	PRDM4	100	98.002	ENSSSCG00000000160	PRDM4	100	98.002	Sus_scrofa
ENSVVUG00000023397	PRDM4	99	88.346	ENSTGUG00000010962	-	99	87.970	Taeniopygia_guttata
ENSVVUG00000023397	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSVVUG00000023397	PRDM4	100	97.129	ENSTTRG00000011056	PRDM4	100	97.129	Tursiops_truncatus
ENSVVUG00000023397	PRDM4	100	98.876	ENSUAMG00000022796	PRDM4	100	98.876	Ursus_americanus
ENSVVUG00000023397	PRDM4	100	98.876	ENSUMAG00000017231	PRDM4	100	98.876	Ursus_maritimus
ENSVVUG00000023397	PRDM4	99	97.992	ENSVPAG00000002215	PRDM4	100	97.992	Vicugna_pacos