EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000024461 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 96773 bases
Position: chrNBDQ01000155.1:791225-887997
Accession: 112934964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000036503	XRN_N	PF03159.18	2.5e-96	1	1
ENSVVUP00000036497	XRN_N	PF03159.18	3.9e-96	1	1
ENSVVUP00000036500	XRN_N	PF03159.18	4.2e-96	1	1
ENSVVUP00000036458	XRN_N	PF03159.18	4.9e-96	1	1
ENSVVUP00000036396	XRN_N	PF03159.18	5e-96	1	1
ENSVVUP00000036392	XRN_N	PF03159.18	5.2e-96	1	1
ENSVVUP00000036506	XRN_N	PF03159.18	3.9e-79	1	1
ENSVVUP00000036522	XRN_N	PF03159.18	5.7e-48	1	1
ENSVVUP00000036552	XRN_N	PF03159.18	5.9e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000047987	XRN1-207	4599	-	ENSVVUP00000036506	1532 (aa)	-	-
ENSVVUT00000047978	XRN1-204	4161	-	ENSVVUP00000036497	1386 (aa)	-	-
ENSVVUT00000047984	XRN1-206	2910	-	ENSVVUP00000036503	969 (aa)	-	-
ENSVVUT00000047981	XRN1-205	3807	-	ENSVVUP00000036500	1268 (aa)	-	-
ENSVVUT00000047840	XRN1-201	5196	-	ENSVVUP00000036392	1731 (aa)	XP_025874308	UPI000DF67CBD
ENSVVUT00000047844	XRN1-202	5124	-	ENSVVUP00000036396	1707 (aa)	-	-
ENSVVUT00000048034	XRN1-209	1404	-	ENSVVUP00000036552	467 (aa)	-	-
ENSVVUT00000047908	XRN1-203	4368	-	ENSVVUP00000036458	1455 (aa)	-	-
ENSVVUT00000048003	XRN1-208	1422	-	ENSVVUP00000036522	473 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000024461's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000024461's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000024461	XRN1	100	36.496	ENSVVUG00000012178	XRN2	71	39.327

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000024461	XRN1	99	96.672	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSVVUG00000024461	XRN1	99	78.571	ENSAPOG00000000622	xrn1	95	75.992	Acanthochromis_polyacanthus
ENSVVUG00000024461	XRN1	99	98.813	ENSAMEG00000012538	XRN1	100	97.349	Ailuropoda_melanoleuca
ENSVVUG00000024461	XRN1	99	78.673	ENSACIG00000001057	xrn1	92	73.008	Amphilophus_citrinellus
ENSVVUG00000024461	XRN1	99	78.696	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSVVUG00000024461	XRN1	99	78.696	ENSAPEG00000006620	xrn1	91	73.034	Amphiprion_percula
ENSVVUG00000024461	XRN1	99	76.592	ENSATEG00000009752	xrn1	95	71.667	Anabas_testudineus
ENSVVUG00000024461	XRN1	99	87.580	ENSAPLG00000004905	XRN1	100	76.682	Anas_platyrhynchos
ENSVVUG00000024461	XRN1	99	86.032	ENSACAG00000004985	XRN1	100	73.270	Anolis_carolinensis
ENSVVUG00000024461	XRN1	99	97.456	ENSANAG00000029013	XRN1	99	96.470	Aotus_nancymaae
ENSVVUG00000024461	XRN1	99	77.883	ENSACLG00000004806	xrn1	96	62.272	Astatotilapia_calliptera
ENSVVUG00000024461	XRN1	98	84.615	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSVVUG00000024461	XRN1	99	98.204	ENSBTAG00000011524	XRN1	100	94.376	Bos_taurus
ENSVVUG00000024461	XRN1	99	47.015	WBGene00012730	xrn-1	74	63.904	Caenorhabditis_elegans
ENSVVUG00000024461	XRN1	99	96.830	ENSCJAG00000001872	XRN1	100	93.556	Callithrix_jacchus
ENSVVUG00000024461	XRN1	100	99.538	ENSCAFG00000007783	XRN1	100	99.538	Canis_familiaris
ENSVVUG00000024461	XRN1	100	99.538	ENSCAFG00020009120	XRN1	100	99.538	Canis_lupus_dingo
ENSVVUG00000024461	XRN1	99	98.204	ENSCHIG00000019192	XRN1	99	93.985	Capra_hircus
ENSVVUG00000024461	XRN1	99	96.830	ENSTSYG00000002705	XRN1	100	93.384	Carlito_syrichta
ENSVVUG00000024461	XRN1	97	74.153	ENSCAPG00000004604	-	99	77.612	Cavia_aperea
ENSVVUG00000024461	XRN1	99	97.521	ENSCCAG00000034800	XRN1	99	97.521	Cebus_capucinus
ENSVVUG00000024461	XRN1	99	97.306	ENSCATG00000041794	XRN1	100	94.259	Cercocebus_atys
ENSVVUG00000024461	XRN1	98	97.368	ENSCLAG00000001451	XRN1	99	96.074	Chinchilla_lanigera
ENSVVUG00000024461	XRN1	99	97.464	ENSCSAG00000011265	XRN1	100	94.318	Chlorocebus_sabaeus
ENSVVUG00000024461	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSVVUG00000024461	XRN1	99	56.930	ENSCING00000001334	-	95	70.652	Ciona_intestinalis
ENSVVUG00000024461	XRN1	99	57.759	ENSCSAVG00000008584	-	98	45.298	Ciona_savignyi
ENSVVUG00000024461	XRN1	99	97.934	ENSCANG00000037495	XRN1	99	98.204	Colobus_angolensis_palliatus
ENSVVUG00000024461	XRN1	99	96.038	ENSCGRG00001019411	Xrn1	99	96.038	Cricetulus_griseus_chok1gshd
ENSVVUG00000024461	XRN1	99	96.038	ENSCGRG00000012464	Xrn1	99	96.038	Cricetulus_griseus_crigri
ENSVVUG00000024461	XRN1	99	78.970	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSVVUG00000024461	XRN1	99	77.039	ENSCVAG00000013089	xrn1	99	74.281	Cyprinodon_variegatus
ENSVVUG00000024461	XRN1	99	79.744	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSVVUG00000024461	XRN1	98	97.368	ENSDORG00000013833	Xrn1	100	87.752	Dipodomys_ordii
ENSVVUG00000024461	XRN1	99	52.700	FBgn0020261	pcm	76	39.614	Drosophila_melanogaster
ENSVVUG00000024461	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSVVUG00000024461	XRN1	99	98.204	ENSEASG00005002687	XRN1	99	98.204	Equus_asinus_asinus
ENSVVUG00000024461	XRN1	99	98.503	ENSECAG00000008301	XRN1	100	94.845	Equus_caballus
ENSVVUG00000024461	XRN1	99	94.218	ENSEEUG00000011323	XRN1	92	83.480	Erinaceus_europaeus
ENSVVUG00000024461	XRN1	99	79.114	ENSELUG00000000169	xrn1	99	61.647	Esox_lucius
ENSVVUG00000024461	XRN1	98	100.000	ENSFCAG00000027589	XRN1	99	97.582	Felis_catus
ENSVVUG00000024461	XRN1	99	88.553	ENSFALG00000007021	XRN1	100	74.846	Ficedula_albicollis
ENSVVUG00000024461	XRN1	99	95.868	ENSFDAG00000020494	XRN1	99	95.868	Fukomys_damarensis
ENSVVUG00000024461	XRN1	99	73.333	ENSFHEG00000017356	-	98	73.333	Fundulus_heteroclitus
ENSVVUG00000024461	XRN1	99	76.948	ENSGMOG00000006396	xrn1	80	68.117	Gadus_morhua
ENSVVUG00000024461	XRN1	99	89.030	ENSGALG00000002706	XRN1	100	75.660	Gallus_gallus
ENSVVUG00000024461	XRN1	99	77.234	ENSGACG00000014328	xrn1	96	61.953	Gasterosteus_aculeatus
ENSVVUG00000024461	XRN1	99	88.024	ENSGAGG00000017535	XRN1	99	78.963	Gopherus_agassizii
ENSVVUG00000024461	XRN1	99	96.672	ENSGGOG00000008047	XRN1	100	93.907	Gorilla_gorilla
ENSVVUG00000024461	XRN1	99	75.355	ENSHBUG00000005908	xrn1	98	73.814	Haplochromis_burtoni
ENSVVUG00000024461	XRN1	99	96.488	ENSHGLG00000014476	XRN1	100	96.488	Heterocephalus_glaber_female
ENSVVUG00000024461	XRN1	99	96.488	ENSHGLG00100015130	XRN1	100	96.488	Heterocephalus_glaber_male
ENSVVUG00000024461	XRN1	99	76.520	ENSHCOG00000014062	xrn1	97	70.156	Hippocampus_comes
ENSVVUG00000024461	XRN1	99	79.362	ENSIPUG00000015229	xrn1	96	63.831	Ictalurus_punctatus
ENSVVUG00000024461	XRN1	99	98.033	ENSSTOG00000013552	XRN1	99	98.204	Ictidomys_tridecemlineatus
ENSVVUG00000024461	XRN1	97	95.228	ENSJJAG00000010863	Xrn1	99	95.228	Jaculus_jaculus
ENSVVUG00000024461	XRN1	99	78.275	ENSKMAG00000021356	xrn1	95	76.923	Kryptolebias_marmoratus
ENSVVUG00000024461	XRN1	99	79.657	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSVVUG00000024461	XRN1	98	90.000	ENSLACG00000009020	XRN1	97	71.099	Latimeria_chalumnae
ENSVVUG00000024461	XRN1	99	82.464	ENSLOCG00000007944	xrn1	96	67.368	Lepisosteus_oculatus
ENSVVUG00000024461	XRN1	99	97.138	ENSLAFG00000015426	XRN1	100	96.726	Loxodonta_africana
ENSVVUG00000024461	XRN1	99	97.464	ENSMFAG00000032599	XRN1	100	94.376	Macaca_fascicularis
ENSVVUG00000024461	XRN1	99	97.306	ENSMMUG00000014038	XRN1	100	94.318	Macaca_mulatta
ENSVVUG00000024461	XRN1	99	96.989	ENSMNEG00000034217	XRN1	100	94.200	Macaca_nemestrina
ENSVVUG00000024461	XRN1	73	92.918	ENSMLEG00000041349	-	99	96.476	Mandrillus_leucophaeus
ENSVVUG00000024461	XRN1	99	79.399	ENSMAMG00000013219	xrn1	94	78.526	Mastacembelus_armatus
ENSVVUG00000024461	XRN1	99	77.725	ENSMZEG00005015099	xrn1	96	62.176	Maylandia_zebra
ENSVVUG00000024461	XRN1	97	84.818	ENSMGAG00000006333	XRN1	100	75.668	Meleagris_gallopavo
ENSVVUG00000024461	XRN1	99	97.147	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSVVUG00000024461	XRN1	99	94.802	ENSMOCG00000008665	Xrn1	99	94.802	Microtus_ochrogaster
ENSVVUG00000024461	XRN1	98	74.026	ENSMMOG00000020896	-	96	69.115	Mola_mola
ENSVVUG00000024461	XRN1	99	90.127	ENSMODG00000021236	XRN1	100	82.322	Monodelphis_domestica
ENSVVUG00000024461	XRN1	99	71.429	ENSMALG00000004098	xrn1	94	67.189	Monopterus_albus
ENSVVUG00000024461	XRN1	99	95.145	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSVVUG00000024461	XRN1	99	95.246	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSVVUG00000024461	XRN1	99	95.404	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSVVUG00000024461	XRN1	99	95.246	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSVVUG00000024461	XRN1	99	99.401	ENSMPUG00000012040	XRN1	100	97.129	Mustela_putorius_furo
ENSVVUG00000024461	XRN1	99	96.820	ENSMLUG00000016885	XRN1	100	92.263	Myotis_lucifugus
ENSVVUG00000024461	XRN1	99	93.050	ENSNGAG00000023964	Xrn1	100	93.050	Nannospalax_galili
ENSVVUG00000024461	XRN1	99	97.464	ENSNLEG00000004726	XRN1	100	93.966	Nomascus_leucogenys
ENSVVUG00000024461	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSVVUG00000024461	XRN1	91	84.112	ENSOPRG00000007337	-	78	85.120	Ochotona_princeps
ENSVVUG00000024461	XRN1	99	78.481	ENSONIG00000016673	xrn1	99	65.212	Oreochromis_niloticus
ENSVVUG00000024461	XRN1	92	88.506	ENSOANG00000006735	XRN1	100	77.701	Ornithorhynchus_anatinus
ENSVVUG00000024461	XRN1	98	100.000	ENSOCUG00000001861	XRN1	100	91.461	Oryctolagus_cuniculus
ENSVVUG00000024461	XRN1	98	81.081	ENSORLG00000013005	xrn1	93	72.778	Oryzias_latipes
ENSVVUG00000024461	XRN1	99	79.524	ENSORLG00020005559	xrn1	93	72.778	Oryzias_latipes_hni
ENSVVUG00000024461	XRN1	98	81.579	ENSORLG00015022523	xrn1	79	83.784	Oryzias_latipes_hsok
ENSVVUG00000024461	XRN1	99	78.323	ENSOMEG00000015397	xrn1	99	73.187	Oryzias_melastigma
ENSVVUG00000024461	XRN1	99	94.041	ENSOGAG00000000170	XRN1	100	91.159	Otolemur_garnettii
ENSVVUG00000024461	XRN1	99	98.204	ENSOARG00000006343	XRN1	99	94.897	Ovis_aries
ENSVVUG00000024461	XRN1	99	96.513	ENSPPAG00000010180	XRN1	100	93.966	Pan_paniscus
ENSVVUG00000024461	XRN1	98	100.000	ENSPPRG00000007125	XRN1	100	95.785	Panthera_pardus
ENSVVUG00000024461	XRN1	98	100.000	ENSPTIG00000021081	XRN1	100	95.843	Panthera_tigris_altaica
ENSVVUG00000024461	XRN1	99	96.513	ENSPTRG00000015482	XRN1	100	93.966	Pan_troglodytes
ENSVVUG00000024461	XRN1	99	97.306	ENSPANG00000010638	XRN1	100	94.200	Papio_anubis
ENSVVUG00000024461	XRN1	99	88.114	ENSPSIG00000018050	XRN1	100	77.898	Pelodiscus_sinensis
ENSVVUG00000024461	XRN1	99	80.300	ENSPMGG00000002648	xrn1	98	79.520	Periophthalmus_magnuspinnatus
ENSVVUG00000024461	XRN1	99	95.243	ENSPEMG00000020610	Xrn1	99	95.721	Peromyscus_maniculatus_bairdii
ENSVVUG00000024461	XRN1	99	54.528	ENSPMAG00000002975	xrn1	91	78.736	Petromyzon_marinus
ENSVVUG00000024461	XRN1	99	90.083	ENSPCIG00000028735	XRN1	100	89.979	Phascolarctos_cinereus
ENSVVUG00000024461	XRN1	98	83.333	ENSPFOG00000013932	xrn1	99	65.555	Poecilia_formosa
ENSVVUG00000024461	XRN1	98	83.333	ENSPLAG00000021653	xrn1	81	83.333	Poecilia_latipinna
ENSVVUG00000024461	XRN1	99	78.130	ENSPMEG00000003076	xrn1	79	83.784	Poecilia_mexicana
ENSVVUG00000024461	XRN1	99	77.987	ENSPREG00000021147	xrn1	96	70.055	Poecilia_reticulata
ENSVVUG00000024461	XRN1	99	97.147	ENSPPYG00000014172	XRN1	100	93.790	Pongo_abelii
ENSVVUG00000024461	XRN1	96	97.368	ENSPCAG00000005638	XRN1	99	82.414	Procavia_capensis
ENSVVUG00000024461	XRN1	99	98.037	ENSPCOG00000013089	XRN1	99	98.503	Propithecus_coquereli
ENSVVUG00000024461	XRN1	99	97.289	ENSPVAG00000016265	XRN1	96	93.154	Pteropus_vampyrus
ENSVVUG00000024461	XRN1	99	78.041	ENSPNYG00000010570	xrn1	93	72.073	Pundamilia_nyererei
ENSVVUG00000024461	XRN1	99	76.303	ENSPNAG00000023531	xrn1	97	61.177	Pygocentrus_nattereri
ENSVVUG00000024461	XRN1	99	94.929	ENSRNOG00000042951	Xrn1	100	89.197	Rattus_norvegicus
ENSVVUG00000024461	XRN1	99	96.989	ENSRBIG00000041227	XRN1	100	93.673	Rhinopithecus_bieti
ENSVVUG00000024461	XRN1	73	91.404	ENSRROG00000033764	-	100	100.000	Rhinopithecus_roxellana
ENSVVUG00000024461	XRN1	93	51.880	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSVVUG00000024461	XRN1	99	97.147	ENSSBOG00000029561	XRN1	100	93.673	Saimiri_boliviensis_boliviensis
ENSVVUG00000024461	XRN1	99	88.511	ENSSHAG00000016207	XRN1	100	81.953	Sarcophilus_harrisii
ENSVVUG00000024461	XRN1	99	78.925	ENSSFOG00015024211	xrn1	97	62.323	Scleropages_formosus
ENSVVUG00000024461	XRN1	99	79.556	ENSSMAG00000016534	xrn1	93	72.617	Scophthalmus_maximus
ENSVVUG00000024461	XRN1	99	79.524	ENSSDUG00000010306	xrn1	91	72.986	Seriola_dumerili
ENSVVUG00000024461	XRN1	99	79.524	ENSSLDG00000021543	xrn1	96	72.452	Seriola_lalandi_dorsalis
ENSVVUG00000024461	XRN1	99	91.453	ENSSARG00000007741	-	83	85.537	Sorex_araneus
ENSVVUG00000024461	XRN1	99	87.764	ENSSPUG00000010779	-	95	88.161	Sphenodon_punctatus
ENSVVUG00000024461	XRN1	99	78.390	ENSSPAG00000009856	-	96	76.923	Stegastes_partitus
ENSVVUG00000024461	XRN1	99	88.871	ENSTGUG00000008498	XRN1	100	76.611	Taeniopygia_guttata
ENSVVUG00000024461	XRN1	99	79.443	ENSTRUG00000004895	xrn1	97	79.318	Takifugu_rubripes
ENSVVUG00000024461	XRN1	99	77.897	ENSTNIG00000017615	xrn1	96	60.652	Tetraodon_nigroviridis
ENSVVUG00000024461	XRN1	90	96.931	ENSTBEG00000003256	XRN1	84	97.305	Tupaia_belangeri
ENSVVUG00000024461	XRN1	99	98.494	ENSTTRG00000012914	XRN1	100	91.037	Tursiops_truncatus
ENSVVUG00000024461	XRN1	99	99.701	ENSUAMG00000001608	XRN1	99	99.701	Ursus_americanus
ENSVVUG00000024461	XRN1	99	99.701	ENSUMAG00000013625	XRN1	100	98.302	Ursus_maritimus
ENSVVUG00000024461	XRN1	99	97.147	ENSVPAG00000004690	XRN1	100	92.443	Vicugna_pacos
ENSVVUG00000024461	XRN1	99	83.254	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSVVUG00000024461	XRN1	99	79.185	ENSXCOG00000007917	xrn1	91	73.024	Xiphophorus_couchianus
ENSVVUG00000024461	XRN1	99	77.266	ENSXMAG00000018320	xrn1	92	72.453	Xiphophorus_maculatus