EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000026247 (Gene tree)
Gene ID: -
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 35389 bases
Position: chrNBDQ01000017.1:1297380-1332768
Accession: 112916617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000038014	ResIII	PF04851.15	7.5e-26	1	2
ENSVVUP00000038014	ResIII	PF04851.15	7.5e-26	2	2
ENSVVUP00000037970	ResIII	PF04851.15	9.1e-26	1	2
ENSVVUP00000037970	ResIII	PF04851.15	9.1e-26	2	2
ENSVVUP00000038241	ResIII	PF04851.15	3.6e-24	1	2
ENSVVUP00000038241	ResIII	PF04851.15	3.6e-24	2	2
ENSVVUP00000038198	ResIII	PF04851.15	3.6e-24	1	2
ENSVVUP00000038198	ResIII	PF04851.15	3.6e-24	2	2
ENSVVUP00000038136	ResIII	PF04851.15	3.8e-24	1	2
ENSVVUP00000038136	ResIII	PF04851.15	3.8e-24	2	2
ENSVVUP00000037978	ResIII	PF04851.15	1.2e-16	1	1
ENSVVUP00000037990	ResIII	PF04851.15	1.6e-10	1	1
ENSVVUP00000038014	DEAD	PF00270.29	3.5e-52	1	2
ENSVVUP00000038014	DEAD	PF00270.29	3.5e-52	2	2
ENSVVUP00000037970	DEAD	PF00270.29	5.3e-52	1	2
ENSVVUP00000037970	DEAD	PF00270.29	5.3e-52	2	2
ENSVVUP00000038136	DEAD	PF00270.29	8.7e-49	1	2
ENSVVUP00000038136	DEAD	PF00270.29	8.7e-49	2	2
ENSVVUP00000038241	DEAD	PF00270.29	9.1e-49	1	2
ENSVVUP00000038241	DEAD	PF00270.29	9.1e-49	2	2
ENSVVUP00000038198	DEAD	PF00270.29	1.5e-48	1	2
ENSVVUP00000038198	DEAD	PF00270.29	1.5e-48	2	2
ENSVVUP00000037978	DEAD	PF00270.29	3.4e-36	1	2
ENSVVUP00000037978	DEAD	PF00270.29	3.4e-36	2	2
ENSVVUP00000037990	DEAD	PF00270.29	1.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000049850	SNRNP200-204	1773	-	ENSVVUP00000038008	590 (aa)	-	-
ENSVVUT00000050067	SNRNP200-207	4824	-	ENSVVUP00000038198	1607 (aa)	-	-
ENSVVUT00000049831	SNRNP200-203	2073	-	ENSVVUP00000037990	690 (aa)	-	UPI00004BC8A0
ENSVVUT00000049819	SNRNP200-202	6255	-	ENSVVUP00000037978	2084 (aa)	-	UPI000C2D7482
ENSVVUT00000050126	SNRNP200-208	4773	-	ENSVVUP00000038241	1590 (aa)	-	-
ENSVVUT00000049811	SNRNP200-201	6426	XM_025994316	ENSVVUP00000037970	2141 (aa)	XP_025850101	-
ENSVVUT00000049863	SNRNP200-205	5679	-	ENSVVUP00000038014	1892 (aa)	-	-
ENSVVUT00000049998	SNRNP200-206	4893	-	ENSVVUP00000038136	1630 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000026247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000026247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000026247	SNRNP200	83	31.611	ENSVVUG00000020760	HFM1	77	33.221
ENSVVUG00000026247	SNRNP200	98	45.996	ENSVVUG00000015397	ASCC3	80	45.392

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000026247	SNRNP200	100	99.673	ENSG00000144028	SNRNP200	100	99.673	Homo_sapiens
ENSVVUG00000026247	SNRNP200	99	90.769	ENSAPOG00000010223	snrnp200	99	90.659	Acanthochromis_polyacanthus
ENSVVUG00000026247	SNRNP200	100	99.720	ENSAMEG00000008996	SNRNP200	100	99.720	Ailuropoda_melanoleuca
ENSVVUG00000026247	SNRNP200	99	89.499	ENSACIG00000001764	snrnp200	99	89.499	Amphilophus_citrinellus
ENSVVUG00000026247	SNRNP200	99	90.675	ENSAOCG00000024593	snrnp200	100	90.150	Amphiprion_ocellaris
ENSVVUG00000026247	SNRNP200	99	90.203	ENSAPEG00000012554	snrnp200	100	90.203	Amphiprion_percula
ENSVVUG00000026247	SNRNP200	99	90.534	ENSATEG00000022522	snrnp200	99	90.425	Anabas_testudineus
ENSVVUG00000026247	SNRNP200	99	97.805	ENSAPLG00000004313	SNRNP200	100	97.554	Anas_platyrhynchos
ENSVVUG00000026247	SNRNP200	99	97.481	ENSACAG00000000434	SNRNP200	100	97.272	Anolis_carolinensis
ENSVVUG00000026247	SNRNP200	100	95.522	ENSANAG00000036625	SNRNP200	100	95.942	Aotus_nancymaae
ENSVVUG00000026247	SNRNP200	99	90.394	ENSACLG00000011188	snrnp200	99	90.285	Astatotilapia_calliptera
ENSVVUG00000026247	SNRNP200	99	90.487	ENSAMXG00000005684	snrnp200	99	90.378	Astyanax_mexicanus
ENSVVUG00000026247	SNRNP200	100	99.159	ENSBTAG00000000848	SNRNP200	100	99.159	Bos_taurus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSCJAG00000007514	SNRNP200	100	100.000	Callithrix_jacchus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSCAFG00020019979	SNRNP200	100	100.000	Canis_lupus_dingo
ENSVVUG00000026247	SNRNP200	100	99.346	ENSCHIG00000020611	SNRNP200	100	99.346	Capra_hircus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSTSYG00000010467	SNRNP200	100	100.000	Carlito_syrichta
ENSVVUG00000026247	SNRNP200	99	99.577	ENSCAPG00000017234	SNRNP200	99	99.577	Cavia_aperea
ENSVVUG00000026247	SNRNP200	100	99.486	ENSCPOG00000006776	SNRNP200	100	99.486	Cavia_porcellus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSCCAG00000033962	SNRNP200	100	100.000	Cebus_capucinus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSCATG00000015790	SNRNP200	100	100.000	Cercocebus_atys
ENSVVUG00000026247	SNRNP200	100	99.346	ENSCLAG00000004116	SNRNP200	100	99.346	Chinchilla_lanigera
ENSVVUG00000026247	SNRNP200	100	99.626	ENSCSAG00000017369	SNRNP200	100	99.626	Chlorocebus_sabaeus
ENSVVUG00000026247	SNRNP200	76	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSVVUG00000026247	SNRNP200	100	97.937	ENSCPBG00000022571	SNRNP200	100	97.937	Chrysemys_picta_bellii
ENSVVUG00000026247	SNRNP200	99	76.681	ENSCING00000005082	-	99	76.561	Ciona_intestinalis
ENSVVUG00000026247	SNRNP200	95	99.833	ENSCANG00000033932	SNRNP200	100	99.603	Colobus_angolensis_palliatus
ENSVVUG00000026247	SNRNP200	100	99.533	ENSCGRG00001022610	Snrnp200	100	99.533	Cricetulus_griseus_chok1gshd
ENSVVUG00000026247	SNRNP200	100	98.974	ENSCGRG00000016472	Snrnp200	100	98.974	Cricetulus_griseus_crigri
ENSVVUG00000026247	SNRNP200	100	89.771	ENSCSEG00000016399	snrnp200	100	89.771	Cynoglossus_semilaevis
ENSVVUG00000026247	SNRNP200	100	87.860	ENSCVAG00000017631	snrnp200	99	87.860	Cyprinodon_variegatus
ENSVVUG00000026247	SNRNP200	100	90.238	ENSDARG00000077536	snrnp200	99	90.238	Danio_rerio
ENSVVUG00000026247	SNRNP200	100	98.784	ENSDNOG00000011227	SNRNP200	100	98.132	Dasypus_novemcinctus
ENSVVUG00000026247	SNRNP200	100	97.198	ENSDORG00000005861	Snrnp200	100	97.198	Dipodomys_ordii
ENSVVUG00000026247	SNRNP200	100	74.176	FBgn0263599	l(3)72Ab	99	74.083	Drosophila_melanogaster
ENSVVUG00000026247	SNRNP200	100	98.936	ENSETEG00000000162	SNRNP200	74	99.742	Echinops_telfairi
ENSVVUG00000026247	SNRNP200	93	74.381	ENSEBUG00000016524	snrnp200	95	81.345	Eptatretus_burgeri
ENSVVUG00000026247	SNRNP200	100	98.605	ENSEASG00005001884	SNRNP200	100	98.605	Equus_asinus_asinus
ENSVVUG00000026247	SNRNP200	100	99.952	ENSECAG00000019675	SNRNP200	100	99.952	Equus_caballus
ENSVVUG00000026247	SNRNP200	91	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSVVUG00000026247	SNRNP200	99	90.722	ENSELUG00000018948	snrnp200	99	90.612	Esox_lucius
ENSVVUG00000026247	SNRNP200	100	100.000	ENSFCAG00000010699	SNRNP200	100	100.000	Felis_catus
ENSVVUG00000026247	SNRNP200	94	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSVVUG00000026247	SNRNP200	100	99.393	ENSFDAG00000004683	SNRNP200	100	99.393	Fukomys_damarensis
ENSVVUG00000026247	SNRNP200	100	90.067	ENSFHEG00000003786	snrnp200	99	90.067	Fundulus_heteroclitus
ENSVVUG00000026247	SNRNP200	100	89.557	ENSGMOG00000004881	snrnp200	99	89.510	Gadus_morhua
ENSVVUG00000026247	SNRNP200	100	90.307	ENSGAFG00000010807	snrnp200	99	90.307	Gambusia_affinis
ENSVVUG00000026247	SNRNP200	100	89.888	ENSGACG00000011474	snrnp200	99	89.795	Gasterosteus_aculeatus
ENSVVUG00000026247	SNRNP200	95	97.728	ENSGAGG00000016069	SNRNP200	99	97.728	Gopherus_agassizii
ENSVVUG00000026247	SNRNP200	100	100.000	ENSGGOG00000005174	SNRNP200	100	100.000	Gorilla_gorilla
ENSVVUG00000026247	SNRNP200	99	87.887	ENSHBUG00000011322	snrnp200	99	87.887	Haplochromis_burtoni
ENSVVUG00000026247	SNRNP200	100	99.486	ENSHGLG00000006654	SNRNP200	100	99.486	Heterocephalus_glaber_female
ENSVVUG00000026247	SNRNP200	100	99.486	ENSHGLG00100018594	SNRNP200	100	99.486	Heterocephalus_glaber_male
ENSVVUG00000026247	SNRNP200	50	81.844	ENSIPUG00000007770	-	89	81.818	Ictalurus_punctatus
ENSVVUG00000026247	SNRNP200	100	99.626	ENSSTOG00000016351	SNRNP200	100	99.626	Ictidomys_tridecemlineatus
ENSVVUG00000026247	SNRNP200	100	99.440	ENSJJAG00000023659	Snrnp200	100	99.440	Jaculus_jaculus
ENSVVUG00000026247	SNRNP200	100	89.813	ENSKMAG00000003665	snrnp200	99	89.813	Kryptolebias_marmoratus
ENSVVUG00000026247	SNRNP200	100	90.145	ENSLBEG00000021585	snrnp200	99	90.145	Labrus_bergylta
ENSVVUG00000026247	SNRNP200	100	83.781	ENSLACG00000000226	SNRNP200	99	95.607	Latimeria_chalumnae
ENSVVUG00000026247	SNRNP200	100	92.060	ENSLOCG00000015198	snrnp200	99	92.060	Lepisosteus_oculatus
ENSVVUG00000026247	SNRNP200	100	99.346	ENSLAFG00000015626	SNRNP200	100	99.346	Loxodonta_africana
ENSVVUG00000026247	SNRNP200	100	100.000	ENSMFAG00000040174	SNRNP200	100	100.000	Macaca_fascicularis
ENSVVUG00000026247	SNRNP200	100	100.000	ENSMMUG00000023261	SNRNP200	100	100.000	Macaca_mulatta
ENSVVUG00000026247	SNRNP200	100	99.855	ENSMNEG00000032398	SNRNP200	100	99.855	Macaca_nemestrina
ENSVVUG00000026247	SNRNP200	100	100.000	ENSMLEG00000019083	SNRNP200	100	100.000	Mandrillus_leucophaeus
ENSVVUG00000026247	SNRNP200	100	90.103	ENSMAMG00000007851	snrnp200	99	90.056	Mastacembelus_armatus
ENSVVUG00000026247	SNRNP200	99	87.887	ENSMZEG00005010787	snrnp200	99	87.887	Maylandia_zebra
ENSVVUG00000026247	SNRNP200	98	97.405	ENSMGAG00000001831	SNRNP200	100	97.104	Meleagris_gallopavo
ENSVVUG00000026247	SNRNP200	100	99.580	ENSMAUG00000011825	Snrnp200	100	99.580	Mesocricetus_auratus
ENSVVUG00000026247	SNRNP200	100	99.710	ENSMICG00000004710	SNRNP200	100	99.710	Microcebus_murinus
ENSVVUG00000026247	SNRNP200	100	97.011	ENSMOCG00000011814	Snrnp200	100	97.011	Microtus_ochrogaster
ENSVVUG00000026247	SNRNP200	99	88.894	ENSMMOG00000014167	snrnp200	99	88.790	Mola_mola
ENSVVUG00000026247	SNRNP200	100	98.832	ENSMODG00000008475	SNRNP200	100	98.832	Monodelphis_domestica
ENSVVUG00000026247	SNRNP200	99	90.675	ENSMALG00000001973	snrnp200	99	90.565	Monopterus_albus
ENSVVUG00000026247	SNRNP200	100	99.393	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.393	Mus_caroli
ENSVVUG00000026247	SNRNP200	100	99.440	ENSMUSG00000003660	Snrnp200	100	99.440	Mus_musculus
ENSVVUG00000026247	SNRNP200	100	99.486	MGP_PahariEiJ_G0025695	Snrnp200	100	99.486	Mus_pahari
ENSVVUG00000026247	SNRNP200	100	99.440	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	Mus_spretus
ENSVVUG00000026247	SNRNP200	100	99.673	ENSMPUG00000008949	SNRNP200	100	99.673	Mustela_putorius_furo
ENSVVUG00000026247	SNRNP200	100	99.021	ENSMLUG00000010493	SNRNP200	100	99.021	Myotis_lucifugus
ENSVVUG00000026247	SNRNP200	100	95.329	ENSMLUG00000027511	-	100	95.329	Myotis_lucifugus
ENSVVUG00000026247	SNRNP200	100	99.673	ENSNGAG00000021993	Snrnp200	100	99.673	Nannospalax_galili
ENSVVUG00000026247	SNRNP200	91	90.435	ENSNBRG00000017960	snrnp200	98	90.435	Neolamprologus_brichardi
ENSVVUG00000026247	SNRNP200	100	98.632	ENSNLEG00000000025	SNRNP200	100	96.377	Nomascus_leucogenys
ENSVVUG00000026247	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSVVUG00000026247	SNRNP200	98	98.323	ENSOPRG00000015464	SNRNP200	100	95.750	Ochotona_princeps
ENSVVUG00000026247	SNRNP200	100	99.346	ENSODEG00000008366	SNRNP200	100	99.346	Octodon_degus
ENSVVUG00000026247	SNRNP200	99	90.394	ENSONIG00000010714	snrnp200	99	90.285	Oreochromis_niloticus
ENSVVUG00000026247	SNRNP200	100	99.533	ENSOCUG00000009864	SNRNP200	100	99.533	Oryctolagus_cuniculus
ENSVVUG00000026247	SNRNP200	100	90.098	ENSORLG00000012286	snrnp200	100	90.098	Oryzias_latipes
ENSVVUG00000026247	SNRNP200	100	90.145	ENSORLG00020004648	snrnp200	100	90.145	Oryzias_latipes_hni
ENSVVUG00000026247	SNRNP200	100	90.098	ENSORLG00015019114	snrnp200	100	90.108	Oryzias_latipes_hsok
ENSVVUG00000026247	SNRNP200	99	90.359	ENSOMEG00000011834	snrnp200	99	90.238	Oryzias_melastigma
ENSVVUG00000026247	SNRNP200	100	99.673	ENSOGAG00000006879	SNRNP200	100	99.673	Otolemur_garnettii
ENSVVUG00000026247	SNRNP200	100	99.088	ENSOARG00000013949	SNRNP200	100	98.321	Ovis_aries
ENSVVUG00000026247	SNRNP200	100	100.000	ENSPPAG00000041559	SNRNP200	100	100.000	Pan_paniscus
ENSVVUG00000026247	SNRNP200	100	99.766	ENSPPRG00000004435	SNRNP200	100	99.766	Panthera_pardus
ENSVVUG00000026247	SNRNP200	100	99.299	ENSPTIG00000006380	SNRNP200	100	99.299	Panthera_tigris_altaica
ENSVVUG00000026247	SNRNP200	100	100.000	ENSPTRG00000012230	SNRNP200	100	100.000	Pan_troglodytes
ENSVVUG00000026247	SNRNP200	100	100.000	ENSPANG00000006017	SNRNP200	100	100.000	Papio_anubis
ENSVVUG00000026247	SNRNP200	100	91.075	ENSPKIG00000014762	snrnp200	99	91.075	Paramormyrops_kingsleyae
ENSVVUG00000026247	SNRNP200	100	97.269	ENSPSIG00000008580	SNRNP200	100	96.592	Pelodiscus_sinensis
ENSVVUG00000026247	SNRNP200	100	99.130	ENSPEMG00000020700	-	100	99.541	Peromyscus_maniculatus_bairdii
ENSVVUG00000026247	SNRNP200	100	98.832	ENSPCIG00000023050	SNRNP200	100	98.832	Phascolarctos_cinereus
ENSVVUG00000026247	SNRNP200	100	90.243	ENSPFOG00000015110	snrnp200	99	90.243	Poecilia_formosa
ENSVVUG00000026247	SNRNP200	99	90.275	ENSPLAG00000006711	snrnp200	99	90.275	Poecilia_latipinna
ENSVVUG00000026247	SNRNP200	99	90.220	ENSPMEG00000021166	snrnp200	99	90.220	Poecilia_mexicana
ENSVVUG00000026247	SNRNP200	100	90.355	ENSPREG00000008875	snrnp200	99	90.355	Poecilia_reticulata
ENSVVUG00000026247	SNRNP200	100	99.673	ENSPPYG00000012068	SNRNP200	100	99.673	Pongo_abelii
ENSVVUG00000026247	SNRNP200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSVVUG00000026247	SNRNP200	100	99.855	ENSPCOG00000024608	SNRNP200	100	99.855	Propithecus_coquereli
ENSVVUG00000026247	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSVVUG00000026247	SNRNP200	99	88.238	ENSPNYG00000017476	snrnp200	99	88.134	Pundamilia_nyererei
ENSVVUG00000026247	SNRNP200	100	88.340	ENSPNAG00000010998	snrnp200	99	88.340	Pygocentrus_nattereri
ENSVVUG00000026247	SNRNP200	100	99.580	ENSRNOG00000012157	Snrnp200	100	99.580	Rattus_norvegicus
ENSVVUG00000026247	SNRNP200	100	100.000	ENSRBIG00000044690	-	100	100.000	Rhinopithecus_bieti
ENSVVUG00000026247	SNRNP200	100	100.000	ENSRROG00000037952	-	100	100.000	Rhinopithecus_roxellana
ENSVVUG00000026247	SNRNP200	100	100.000	ENSSBOG00000035471	SNRNP200	100	100.000	Saimiri_boliviensis_boliviensis
ENSVVUG00000026247	SNRNP200	98	99.189	ENSSHAG00000000758	SNRNP200	100	98.745	Sarcophilus_harrisii
ENSVVUG00000026247	SNRNP200	99	91.425	ENSSFOG00015018826	snrnp200	99	91.312	Scleropages_formosus
ENSVVUG00000026247	SNRNP200	99	90.347	ENSSMAG00000005463	snrnp200	99	90.310	Scophthalmus_maximus
ENSVVUG00000026247	SNRNP200	99	90.628	ENSSDUG00000021410	snrnp200	99	90.518	Seriola_dumerili
ENSVVUG00000026247	SNRNP200	99	90.627	ENSSLDG00000010884	snrnp200	99	90.472	Seriola_lalandi_dorsalis
ENSVVUG00000026247	SNRNP200	95	99.196	ENSSARG00000010728	SNRNP200	96	99.196	Sorex_araneus
ENSVVUG00000026247	SNRNP200	100	97.384	ENSSPUG00000003726	-	100	97.384	Sphenodon_punctatus
ENSVVUG00000026247	SNRNP200	99	90.675	ENSSPAG00000001842	snrnp200	99	90.565	Stegastes_partitus
ENSVVUG00000026247	SNRNP200	100	99.580	ENSSSCG00000008127	SNRNP200	100	99.580	Sus_scrofa
ENSVVUG00000026247	SNRNP200	99	87.768	ENSTGUG00000014475	-	100	87.768	Taeniopygia_guttata
ENSVVUG00000026247	SNRNP200	99	90.300	ENSTRUG00000001307	snrnp200	99	90.191	Takifugu_rubripes
ENSVVUG00000026247	SNRNP200	100	85.705	ENSTNIG00000004320	snrnp200	100	85.705	Tetraodon_nigroviridis
ENSVVUG00000026247	SNRNP200	84	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSVVUG00000026247	SNRNP200	100	99.393	ENSTTRG00000004983	SNRNP200	100	99.393	Tursiops_truncatus
ENSVVUG00000026247	SNRNP200	95	90.729	ENSUAMG00000008395	-	95	93.023	Ursus_americanus
ENSVVUG00000026247	SNRNP200	100	99.766	ENSUMAG00000012385	SNRNP200	100	99.766	Ursus_maritimus
ENSVVUG00000026247	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSVVUG00000026247	SNRNP200	100	94.216	ENSXETG00000001243	snrnp200	100	94.216	Xenopus_tropicalis
ENSVVUG00000026247	SNRNP200	99	90.266	ENSXMAG00000002058	snrnp200	99	90.266	Xiphophorus_maculatus