EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000027878 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 24969 bases
Position: chrNBDQ01000053.1:2118143-2143111
Accession: 112924841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000039109	RNA_pol_Rpb1_5	PF04998.17	1e-100	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	1	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	2	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	3	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	4	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	5	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	6	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	7	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	8	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	9	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	10	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	11	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	12	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	13	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	14	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	15	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	16	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	17	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	18	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	19	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	20	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	21	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	22	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	23	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	24	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	25	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	26	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	27	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	28	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	29	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	30	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	31	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	32	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	33	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	34	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	35	36
ENSVVUP00000039109	RNA_pol_Rpb1_R	PF05001.13	1.4e-24	36	36
ENSVVUP00000039109	RNA_pol_Rpb1_4	PF05000.17	5.9e-38	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_2	PF00623.20	1.9e-74	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_3	PF04983.18	8.3e-50	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_1	PF04997.12	8.1e-109	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_7	PF04990.12	3.4e-54	1	1
ENSVVUP00000039109	RNA_pol_Rpb1_6	PF04992.14	2.3e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000051242	-	6225	XM_026005393	ENSVVUP00000039109	1942 (aa)	XP_025861178	UPI000DF70BBF

Gene Model

Click here to download ENSVVUG00000027878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000027878's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000027878	-	56	37.143	ENSVVUG00000001245	POLR1A	64	37.143
ENSVVUG00000027878	-	67	38.436	ENSVVUG00000025523	POLR3A	91	38.436

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000027878	-	87	94.420	ENSAPOG00000006552	polr2a	92	94.413	Acanthochromis_polyacanthus
ENSVVUG00000027878	-	100	98.327	ENSAMEG00000016265	-	100	96.407	Ailuropoda_melanoleuca
ENSVVUG00000027878	-	83	91.816	ENSACIG00000015982	polr2a	81	92.427	Amphilophus_citrinellus
ENSVVUG00000027878	-	95	94.482	ENSAOCG00000004255	polr2a	91	94.475	Amphiprion_ocellaris
ENSVVUG00000027878	-	83	94.482	ENSAPEG00000012623	polr2a	82	94.475	Amphiprion_percula
ENSVVUG00000027878	-	83	94.358	ENSATEG00000019644	polr2a	82	94.351	Anabas_testudineus
ENSVVUG00000027878	-	100	97.056	ENSACAG00000014561	POLR2A	100	95.134	Anolis_carolinensis
ENSVVUG00000027878	-	100	98.528	ENSANAG00000020093	-	100	96.604	Aotus_nancymaae
ENSVVUG00000027878	-	83	94.172	ENSACLG00000006735	polr2a	82	94.165	Astatotilapia_calliptera
ENSVVUG00000027878	-	83	94.730	ENSAMXG00000020046	polr2a	82	94.724	Astyanax_mexicanus
ENSVVUG00000027878	-	100	98.477	ENSBTAG00000046765	POLR2A	100	96.553	Bos_taurus
ENSVVUG00000027878	-	100	98.273	ENSCAFG00000016532	POLR2A	99	99.273	Canis_familiaris
ENSVVUG00000027878	-	100	97.666	ENSCAFG00020007929	-	100	95.745	Canis_lupus_dingo
ENSVVUG00000027878	-	100	98.477	ENSCHIG00000027173	-	100	96.553	Capra_hircus
ENSVVUG00000027878	-	100	96.041	ENSTSYG00000012803	-	100	96.862	Carlito_syrichta
ENSVVUG00000027878	-	98	94.936	ENSCAPG00000001882	-	98	98.607	Cavia_aperea
ENSVVUG00000027878	-	100	95.126	ENSCPOG00000014812	-	98	98.634	Cavia_porcellus
ENSVVUG00000027878	-	100	98.528	ENSCCAG00000020938	-	100	96.604	Cebus_capucinus
ENSVVUG00000027878	-	100	98.477	ENSCATG00000013680	-	100	96.553	Cercocebus_atys
ENSVVUG00000027878	-	100	98.376	ENSCLAG00000012196	-	100	96.452	Chinchilla_lanigera
ENSVVUG00000027878	-	100	90.960	ENSCSAG00000011644	-	100	89.057	Chlorocebus_sabaeus
ENSVVUG00000027878	-	100	92.538	ENSCPBG00000012697	POLR2A	100	92.233	Chrysemys_picta_bellii
ENSVVUG00000027878	-	98	76.488	ENSCING00000007884	-	99	76.751	Ciona_intestinalis
ENSVVUG00000027878	-	97	83.333	ENSCSAVG00000008334	-	100	79.279	Ciona_savignyi
ENSVVUG00000027878	-	100	97.817	ENSCANG00000010622	-	100	95.895	Colobus_angolensis_palliatus
ENSVVUG00000027878	-	83	93.423	ENSCGRG00001003538	Polr2a	84	91.897	Cricetulus_griseus_chok1gshd
ENSVVUG00000027878	-	83	96.074	ENSCGRG00000012105	Polr2a	85	96.012	Cricetulus_griseus_crigri
ENSVVUG00000027878	-	83	93.738	ENSCSEG00000002635	polr2a	82	93.731	Cynoglossus_semilaevis
ENSVVUG00000027878	-	83	94.606	ENSCVAG00000005156	polr2a	82	94.600	Cyprinodon_variegatus
ENSVVUG00000027878	-	83	94.424	ENSDARG00000099966	polr2a	82	94.417	Danio_rerio
ENSVVUG00000027878	-	100	95.533	ENSDNOG00000016482	-	100	93.614	Dasypus_novemcinctus
ENSVVUG00000027878	-	100	98.528	ENSDORG00000008667	Polr2a	100	96.604	Dipodomys_ordii
ENSVVUG00000027878	-	99	69.620	FBgn0003277	RpII215	97	74.766	Drosophila_melanogaster
ENSVVUG00000027878	-	94	87.716	ENSETEG00000002540	-	94	86.698	Echinops_telfairi
ENSVVUG00000027878	-	83	88.085	ENSEBUG00000013967	polr2a	83	87.669	Eptatretus_burgeri
ENSVVUG00000027878	-	83	97.827	ENSEASG00005019114	-	83	97.827	Equus_asinus_asinus
ENSVVUG00000027878	-	100	98.477	ENSECAG00000018485	POLR2A	100	96.553	Equus_caballus
ENSVVUG00000027878	-	87	99.733	ENSEEUG00000001154	-	95	99.733	Erinaceus_europaeus
ENSVVUG00000027878	-	90	90.080	ENSELUG00000014284	polr2a	84	90.746	Esox_lucius
ENSVVUG00000027878	-	100	98.477	ENSFDAG00000008287	-	100	96.553	Fukomys_damarensis
ENSVVUG00000027878	-	89	94.606	ENSFHEG00000001768	polr2a	95	94.600	Fundulus_heteroclitus
ENSVVUG00000027878	-	99	90.301	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSVVUG00000027878	-	99	94.366	ENSGAFG00000005389	polr2a	99	92.365	Gambusia_affinis
ENSVVUG00000027878	-	99	90.689	ENSGACG00000019366	polr2a	100	88.190	Gasterosteus_aculeatus
ENSVVUG00000027878	-	100	96.707	ENSGGOG00000014800	-	100	94.790	Gorilla_gorilla
ENSVVUG00000027878	-	93	92.064	ENSHBUG00000018937	polr2a	96	94.165	Haplochromis_burtoni
ENSVVUG00000027878	-	100	98.477	ENSHGLG00000012381	POLR2A	100	96.553	Heterocephalus_glaber_female
ENSVVUG00000027878	-	100	98.477	ENSHGLG00100014843	POLR2A	100	96.553	Heterocephalus_glaber_male
ENSVVUG00000027878	-	83	93.986	ENSHCOG00000011874	polr2a	82	93.979	Hippocampus_comes
ENSVVUG00000027878	-	83	94.110	ENSIPUG00000002613	Polr2a	82	94.103	Ictalurus_punctatus
ENSVVUG00000027878	-	100	98.528	ENSSTOG00000001304	-	100	96.604	Ictidomys_tridecemlineatus
ENSVVUG00000027878	-	100	98.426	ENSJJAG00000013049	Polr2a	100	96.503	Jaculus_jaculus
ENSVVUG00000027878	-	82	85.292	ENSKMAG00000016343	polr2a	85	85.544	Kryptolebias_marmoratus
ENSVVUG00000027878	-	83	94.110	ENSLBEG00000027652	polr2a	82	94.103	Labrus_bergylta
ENSVVUG00000027878	-	81	87.160	ENSLACG00000012071	POLR2A	93	96.970	Latimeria_chalumnae
ENSVVUG00000027878	-	92	94.902	ENSLOCG00000013863	polr2a	85	91.427	Lepisosteus_oculatus
ENSVVUG00000027878	-	100	98.477	ENSLAFG00000008626	-	100	96.553	Loxodonta_africana
ENSVVUG00000027878	-	50	98.264	ENSMFAG00000007042	-	99	98.264	Macaca_fascicularis
ENSVVUG00000027878	-	100	98.477	ENSMMUG00000023620	-	100	96.553	Macaca_mulatta
ENSVVUG00000027878	-	100	97.774	ENSMNEG00000040407	-	100	95.802	Macaca_nemestrina
ENSVVUG00000027878	-	83	93.851	ENSMLEG00000030263	-	99	98.264	Mandrillus_leucophaeus
ENSVVUG00000027878	-	83	94.234	ENSMAMG00000003351	polr2a	82	94.227	Mastacembelus_armatus
ENSVVUG00000027878	-	83	94.172	ENSMZEG00005021429	polr2a	82	94.165	Maylandia_zebra
ENSVVUG00000027878	-	51	99.898	ENSMAUG00000021055	-	99	99.898	Mesocricetus_auratus
ENSVVUG00000027878	-	100	98.426	ENSMICG00000013372	-	98	98.669	Microcebus_murinus
ENSVVUG00000027878	-	100	91.786	ENSMOCG00000018279	Polr2a	100	90.509	Microtus_ochrogaster
ENSVVUG00000027878	-	89	93.738	ENSMMOG00000012515	polr2a	91	93.731	Mola_mola
ENSVVUG00000027878	-	100	98.122	ENSMODG00000007009	-	100	96.199	Monodelphis_domestica
ENSVVUG00000027878	-	97	89.737	ENSMALG00000008716	polr2a	96	94.413	Monopterus_albus
ENSVVUG00000027878	-	100	98.477	MGP_CAROLIEiJ_G0016587	Polr2a	100	96.553	Mus_caroli
ENSVVUG00000027878	-	100	98.477	ENSMUSG00000005198	Polr2a	100	96.553	Mus_musculus
ENSVVUG00000027878	-	100	96.712	MGP_PahariEiJ_G0017718	Polr2a	100	94.798	Mus_pahari
ENSVVUG00000027878	-	100	98.477	MGP_SPRETEiJ_G0017423	Polr2a	100	96.553	Mus_spretus
ENSVVUG00000027878	-	100	98.528	ENSMPUG00000009648	-	100	96.604	Mustela_putorius_furo
ENSVVUG00000027878	-	100	98.022	ENSMLUG00000009088	-	100	96.101	Myotis_lucifugus
ENSVVUG00000027878	-	100	98.528	ENSNGAG00000002543	Polr2a	100	96.604	Nannospalax_galili
ENSVVUG00000027878	-	83	91.569	ENSNBRG00000002005	polr2a	81	92.117	Neolamprologus_brichardi
ENSVVUG00000027878	-	100	97.315	ENSNLEG00000009460	-	100	95.397	Nomascus_leucogenys
ENSVVUG00000027878	-	93	99.455	ENSMEUG00000008611	-	93	99.455	Notamacropus_eugenii
ENSVVUG00000027878	-	82	99.810	ENSOPRG00000015116	-	99	99.810	Ochotona_princeps
ENSVVUG00000027878	-	100	95.637	ENSODEG00000017674	-	100	92.437	Octodon_degus
ENSVVUG00000027878	-	83	94.358	ENSONIG00000009231	polr2a	82	94.351	Oreochromis_niloticus
ENSVVUG00000027878	-	100	97.867	ENSOCUG00000017929	-	100	97.867	Oryctolagus_cuniculus
ENSVVUG00000027878	-	83	94.234	ENSORLG00000006431	polr2a	82	94.227	Oryzias_latipes
ENSVVUG00000027878	-	83	94.234	ENSORLG00020010235	polr2a	82	94.227	Oryzias_latipes_hni
ENSVVUG00000027878	-	83	94.234	ENSORLG00015007075	polr2a	82	94.227	Oryzias_latipes_hsok
ENSVVUG00000027878	-	92	94.344	ENSOMEG00000010713	polr2a	100	94.344	Oryzias_melastigma
ENSVVUG00000027878	-	100	98.376	ENSOGAG00000033608	-	100	96.452	Otolemur_garnettii
ENSVVUG00000027878	-	99	98.254	ENSOARG00000013874	-	100	97.989	Ovis_aries
ENSVVUG00000027878	-	100	96.223	ENSPPAG00000043734	-	100	94.405	Pan_paniscus
ENSVVUG00000027878	-	100	97.315	ENSPTRG00000008691	POLR2A	100	95.397	Pan_troglodytes
ENSVVUG00000027878	-	100	97.817	ENSPANG00000024099	-	100	95.895	Papio_anubis
ENSVVUG00000027878	-	78	92.793	ENSPKIG00000005727	polr2a	85	82.000	Paramormyrops_kingsleyae
ENSVVUG00000027878	-	98	96.478	ENSPSIG00000014006	POLR2A	100	96.478	Pelodiscus_sinensis
ENSVVUG00000027878	-	100	94.164	ENSPMGG00000019734	polr2a	99	94.600	Periophthalmus_magnuspinnatus
ENSVVUG00000027878	-	100	98.528	ENSPEMG00000012521	Polr2a	100	96.604	Peromyscus_maniculatus_bairdii
ENSVVUG00000027878	-	96	87.342	ENSPCIG00000028851	-	96	87.342	Phascolarctos_cinereus
ENSVVUG00000027878	-	83	94.544	ENSPFOG00000007890	polr2a	84	94.538	Poecilia_formosa
ENSVVUG00000027878	-	83	94.544	ENSPLAG00000007399	polr2a	84	94.538	Poecilia_latipinna
ENSVVUG00000027878	-	86	92.374	ENSPMEG00000002071	polr2a	84	94.538	Poecilia_mexicana
ENSVVUG00000027878	-	83	94.482	ENSPREG00000013122	polr2a	82	94.475	Poecilia_reticulata
ENSVVUG00000027878	-	100	99.182	ENSPPYG00000007924	-	100	99.182	Pongo_abelii
ENSVVUG00000027878	-	75	99.737	ENSPCAG00000006951	-	74	99.737	Procavia_capensis
ENSVVUG00000027878	-	100	97.330	ENSPCOG00000025260	-	100	95.423	Propithecus_coquereli
ENSVVUG00000027878	-	100	98.274	ENSPVAG00000005069	-	100	96.351	Pteropus_vampyrus
ENSVVUG00000027878	-	95	94.429	ENSPNYG00000022340	polr2a	96	87.329	Pundamilia_nyererei
ENSVVUG00000027878	-	83	94.544	ENSPNAG00000011237	polr2a	82	94.538	Pygocentrus_nattereri
ENSVVUG00000027878	-	100	98.528	ENSRNOG00000028834	Polr2a	100	96.604	Rattus_norvegicus
ENSVVUG00000027878	-	100	97.374	ENSRBIG00000002471	-	100	97.889	Rhinopithecus_bieti
ENSVVUG00000027878	-	100	98.828	ENSRROG00000029583	-	100	96.846	Rhinopithecus_roxellana
ENSVVUG00000027878	-	83	49.969	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSVVUG00000027878	-	100	98.528	ENSSBOG00000000808	-	100	96.604	Saimiri_boliviensis_boliviensis
ENSVVUG00000027878	-	100	96.504	ENSSHAG00000002858	-	100	98.455	Sarcophilus_harrisii
ENSVVUG00000027878	-	83	94.606	ENSSFOG00015023275	polr2a	82	94.600	Scleropages_formosus
ENSVVUG00000027878	-	83	93.986	ENSSMAG00000009137	polr2a	82	93.979	Scophthalmus_maximus
ENSVVUG00000027878	-	83	94.358	ENSSDUG00000020466	polr2a	82	94.351	Seriola_dumerili
ENSVVUG00000027878	-	83	94.358	ENSSLDG00000020613	polr2a	82	94.351	Seriola_lalandi_dorsalis
ENSVVUG00000027878	-	96	94.976	ENSSARG00000005875	-	99	94.976	Sorex_araneus
ENSVVUG00000027878	-	100	94.420	ENSSPAG00000016741	polr2a	94	94.413	Stegastes_partitus
ENSVVUG00000027878	-	83	99.007	ENSSSCG00000028278	-	82	99.007	Sus_scrofa
ENSVVUG00000027878	-	99	88.538	ENSTRUG00000012320	polr2a	81	88.524	Takifugu_rubripes
ENSVVUG00000027878	-	92	92.870	ENSTNIG00000010136	polr2a	100	92.862	Tetraodon_nigroviridis
ENSVVUG00000027878	-	74	100.000	ENSTBEG00000013294	-	58	100.000	Tupaia_belangeri
ENSVVUG00000027878	-	100	96.954	ENSTTRG00000014273	-	100	95.033	Tursiops_truncatus
ENSVVUG00000027878	-	97	95.355	ENSUAMG00000014866	-	100	99.628	Ursus_americanus
ENSVVUG00000027878	-	99	95.745	ENSUMAG00000015732	-	100	93.447	Ursus_maritimus
ENSVVUG00000027878	-	65	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSVVUG00000027878	-	99	95.637	ENSXETG00000012465	polr2a	100	94.106	Xenopus_tropicalis
ENSVVUG00000027878	-	87	92.312	ENSXCOG00000001804	polr2a	94	92.303	Xiphophorus_couchianus
ENSVVUG00000027878	-	83	94.482	ENSXMAG00000015687	polr2a	82	94.475	Xiphophorus_maculatus