EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000028011 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 24442 bases
Position: chrNBDQ01000053.1:2467287-2491728
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000039336	ResIII	PF04851.15	2.7e-08	1	1
ENSVVUP00000039328	ResIII	PF04851.15	2.8e-08	1	1
ENSVVUP00000039320	ResIII	PF04851.15	2.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000051485	CHD3-201	7622	-	ENSVVUP00000039320	2047 (aa)	-	-
ENSVVUT00000051494	CHD3-202	7520	-	ENSVVUP00000039328	2013 (aa)	-	-
ENSVVUT00000051507	CHD3-203	7249	-	ENSVVUP00000039336	1902 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000028011's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000028011's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000028011	CHD3	89	70.185	ENSVVUG00000011414	-	98	68.673
ENSVVUG00000028011	CHD3	87	83.105	ENSVVUG00000026480	CHD5	94	83.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000028011	CHD3	99	98.455	ENSG00000170004	CHD3	99	97.348	Homo_sapiens
ENSVVUG00000028011	CHD3	83	81.053	ENSAPOG00000005614	chd3	94	81.053	Acanthochromis_polyacanthus
ENSVVUG00000028011	CHD3	72	97.581	ENSAMEG00000003025	-	100	97.581	Ailuropoda_melanoleuca
ENSVVUG00000028011	CHD3	83	87.861	ENSACIG00000019671	chd3	99	87.861	Amphilophus_citrinellus
ENSVVUG00000028011	CHD3	86	84.016	ENSAOCG00000023784	chd3	97	81.603	Amphiprion_ocellaris
ENSVVUG00000028011	CHD3	86	84.016	ENSAPEG00000006341	chd3	93	77.049	Amphiprion_percula
ENSVVUG00000028011	CHD3	98	74.190	ENSATEG00000000848	chd3	99	74.940	Anabas_testudineus
ENSVVUG00000028011	CHD3	98	85.563	ENSACAG00000004276	CHD3	92	85.594	Anolis_carolinensis
ENSVVUG00000028011	CHD3	99	98.348	ENSANAG00000034323	CHD3	99	98.348	Aotus_nancymaae
ENSVVUG00000028011	CHD3	92	80.449	ENSACLG00000009222	chd3	97	74.694	Astatotilapia_calliptera
ENSVVUG00000028011	CHD3	99	97.923	ENSBTAG00000014377	CHD3	95	98.083	Bos_taurus
ENSVVUG00000028011	CHD3	99	98.242	ENSCJAG00000014766	CHD3	94	98.356	Callithrix_jacchus
ENSVVUG00000028011	CHD3	99	99.840	ENSCAFG00000016859	CHD3	94	99.841	Canis_familiaris
ENSVVUG00000028011	CHD3	99	100.000	ENSCAFG00020007422	CHD3	100	100.000	Canis_lupus_dingo
ENSVVUG00000028011	CHD3	99	98.295	ENSCHIG00000016737	CHD3	96	98.256	Capra_hircus
ENSVVUG00000028011	CHD3	99	98.189	ENSTSYG00000035658	CHD3	99	95.806	Carlito_syrichta
ENSVVUG00000028011	CHD3	99	94.832	ENSCAPG00000014864	CHD3	94	94.832	Cavia_aperea
ENSVVUG00000028011	CHD3	99	97.496	ENSCPOG00000022653	CHD3	94	97.496	Cavia_porcellus
ENSVVUG00000028011	CHD3	99	98.242	ENSCCAG00000034792	CHD3	94	98.356	Cebus_capucinus
ENSVVUG00000028011	CHD3	99	98.189	ENSCATG00000041717	CHD3	94	98.326	Cercocebus_atys
ENSVVUG00000028011	CHD3	99	97.869	ENSCLAG00000010523	CHD3	96	98.002	Chinchilla_lanigera
ENSVVUG00000028011	CHD3	99	98.082	ENSCSAG00000011122	CHD3	96	98.144	Chlorocebus_sabaeus
ENSVVUG00000028011	CHD3	89	86.051	ENSCPBG00000011966	CHD3	99	87.388	Chrysemys_picta_bellii
ENSVVUG00000028011	CHD3	99	98.135	ENSCANG00000037641	CHD3	99	95.307	Colobus_angolensis_palliatus
ENSVVUG00000028011	CHD3	99	96.857	ENSCGRG00001011306	Chd3	96	97.192	Cricetulus_griseus_chok1gshd
ENSVVUG00000028011	CHD3	87	98.529	ENSCGRG00000007878	Chd3	95	98.529	Cricetulus_griseus_crigri
ENSVVUG00000028011	CHD3	91	79.605	ENSCSEG00000004489	chd3	97	77.732	Cynoglossus_semilaevis
ENSVVUG00000028011	CHD3	88	82.470	ENSCVAG00000007293	chd3	95	82.661	Cyprinodon_variegatus
ENSVVUG00000028011	CHD3	92	82.274	ENSDARG00000021405	chd3	97	76.874	Danio_rerio
ENSVVUG00000028011	CHD3	98	82.209	ENSDNOG00000047846	CHD3	87	92.170	Dasypus_novemcinctus
ENSVVUG00000028011	CHD3	99	97.548	ENSDORG00000010713	Chd3	96	97.839	Dipodomys_ordii
ENSVVUG00000028011	CHD3	96	92.732	ENSETEG00000017733	CHD3	98	91.357	Echinops_telfairi
ENSVVUG00000028011	CHD3	79	69.840	ENSEBUG00000008310	chd3	99	70.396	Eptatretus_burgeri
ENSVVUG00000028011	CHD3	96	98.472	ENSEASG00005019360	CHD3	100	98.472	Equus_asinus_asinus
ENSVVUG00000028011	CHD3	96	98.527	ENSECAG00000010051	CHD3	100	98.527	Equus_caballus
ENSVVUG00000028011	CHD3	91	98.305	ENSEEUG00000015205	CHD3	88	98.305	Erinaceus_europaeus
ENSVVUG00000028011	CHD3	81	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSVVUG00000028011	CHD3	99	98.561	ENSFCAG00000009629	CHD3	92	98.621	Felis_catus
ENSVVUG00000028011	CHD3	98	98.026	ENSFDAG00000008220	CHD3	95	98.026	Fukomys_damarensis
ENSVVUG00000028011	CHD3	89	80.406	ENSGMOG00000013599	chd3	87	81.015	Gadus_morhua
ENSVVUG00000028011	CHD3	58	77.171	ENSGAFG00000004055	chd3	99	76.561	Gambusia_affinis
ENSVVUG00000028011	CHD3	99	71.960	ENSGACG00000019275	chd3	96	71.996	Gasterosteus_aculeatus
ENSVVUG00000028011	CHD3	78	85.294	ENSGAGG00000013164	CHD3	98	86.753	Gopherus_agassizii
ENSVVUG00000028011	CHD3	99	98.455	ENSGGOG00000013496	CHD3	99	95.577	Gorilla_gorilla
ENSVVUG00000028011	CHD3	99	97.762	ENSHGLG00000012017	CHD3	95	97.985	Heterocephalus_glaber_female
ENSVVUG00000028011	CHD3	88	91.014	ENSHGLG00100013902	CHD3	95	91.014	Heterocephalus_glaber_male
ENSVVUG00000028011	CHD3	95	74.094	ENSHCOG00000010170	chd3	96	72.843	Hippocampus_comes
ENSVVUG00000028011	CHD3	87	80.652	ENSIPUG00000003271	chd3	96	79.709	Ictalurus_punctatus
ENSVVUG00000028011	CHD3	99	97.922	ENSSTOG00000025907	CHD3	96	98.056	Ictidomys_tridecemlineatus
ENSVVUG00000028011	CHD3	99	97.176	ENSJJAG00000017633	Chd3	96	97.462	Jaculus_jaculus
ENSVVUG00000028011	CHD3	86	90.047	ENSKMAG00000019292	chd3	97	74.867	Kryptolebias_marmoratus
ENSVVUG00000028011	CHD3	97	70.188	ENSLBEG00000028485	chd3	98	70.057	Labrus_bergylta
ENSVVUG00000028011	CHD3	96	75.574	ENSLACG00000008031	CHD3	97	75.399	Latimeria_chalumnae
ENSVVUG00000028011	CHD3	98	77.979	ENSLOCG00000013965	chd3	93	78.387	Lepisosteus_oculatus
ENSVVUG00000028011	CHD3	94	94.098	ENSLAFG00000000572	CHD3	99	94.539	Loxodonta_africana
ENSVVUG00000028011	CHD3	99	98.135	ENSMFAG00000020113	CHD3	99	96.505	Macaca_fascicularis
ENSVVUG00000028011	CHD3	99	95.631	ENSMMUG00000022221	CHD3	95	95.130	Macaca_mulatta
ENSVVUG00000028011	CHD3	99	98.135	ENSMNEG00000001728	CHD3	99	97.706	Macaca_nemestrina
ENSVVUG00000028011	CHD3	99	98.189	ENSMLEG00000032249	CHD3	94	98.326	Mandrillus_leucophaeus
ENSVVUG00000028011	CHD3	89	75.539	ENSMAMG00000000564	chd3	99	77.151	Mastacembelus_armatus
ENSVVUG00000028011	CHD3	99	96.590	ENSMAUG00000013873	Chd3	99	94.365	Mesocricetus_auratus
ENSVVUG00000028011	CHD3	99	97.922	ENSMICG00000008741	CHD3	92	98.091	Microcebus_murinus
ENSVVUG00000028011	CHD3	99	96.857	ENSMOCG00000004848	Chd3	96	97.239	Microtus_ochrogaster
ENSVVUG00000028011	CHD3	96	75.217	ENSMMOG00000012699	chd3	98	74.078	Mola_mola
ENSVVUG00000028011	CHD3	96	92.203	ENSMODG00000007509	CHD3	100	92.312	Monodelphis_domestica
ENSVVUG00000028011	CHD3	99	96.699	MGP_CAROLIEiJ_G0016564	Chd3	98	97.016	Mus_caroli
ENSVVUG00000028011	CHD3	99	96.807	ENSMUSG00000018474	Chd3	98	97.126	Mus_musculus
ENSVVUG00000028011	CHD3	99	96.912	MGP_PahariEiJ_G0017695	Chd3	98	97.233	Mus_pahari
ENSVVUG00000028011	CHD3	99	96.807	MGP_SPRETEiJ_G0017400	Chd3	98	97.180	Mus_spretus
ENSVVUG00000028011	CHD3	90	98.658	ENSMPUG00000008861	CHD3	100	98.658	Mustela_putorius_furo
ENSVVUG00000028011	CHD3	98	97.601	ENSMLUG00000014643	-	94	97.601	Myotis_lucifugus
ENSVVUG00000028011	CHD3	99	97.230	ENSNGAG00000000773	Chd3	94	97.243	Nannospalax_galili
ENSVVUG00000028011	CHD3	89	75.395	ENSNBRG00000000636	chd3	97	76.822	Neolamprologus_brichardi
ENSVVUG00000028011	CHD3	98	94.424	ENSNLEG00000009770	CHD3	98	95.228	Nomascus_leucogenys
ENSVVUG00000028011	CHD3	86	91.209	ENSMEUG00000005852	CHD3	85	91.209	Notamacropus_eugenii
ENSVVUG00000028011	CHD3	98	96.261	ENSOPRG00000011069	CHD3	100	96.261	Ochotona_princeps
ENSVVUG00000028011	CHD3	98	97.492	ENSODEG00000017785	CHD3	95	97.458	Octodon_degus
ENSVVUG00000028011	CHD3	96	75.964	ENSONIG00000009292	chd3	98	75.182	Oreochromis_niloticus
ENSVVUG00000028011	CHD3	99	92.891	ENSOCUG00000029299	CHD3	96	92.361	Oryctolagus_cuniculus
ENSVVUG00000028011	CHD3	83	71.773	ENSORLG00000007107	chd3	93	72.079	Oryzias_latipes
ENSVVUG00000028011	CHD3	56	75.349	ENSORLG00020008387	chd3	95	73.498	Oryzias_latipes_hni
ENSVVUG00000028011	CHD3	83	77.639	ENSOMEG00000013691	chd3	99	78.772	Oryzias_melastigma
ENSVVUG00000028011	CHD3	99	97.869	ENSOGAG00000003216	CHD3	96	97.881	Otolemur_garnettii
ENSVVUG00000028011	CHD3	99	95.851	ENSOARG00000017855	CHD3	95	95.831	Ovis_aries
ENSVVUG00000028011	CHD3	99	95.960	ENSPPAG00000032886	CHD3	99	94.839	Pan_paniscus
ENSVVUG00000028011	CHD3	99	98.774	ENSPPRG00000000626	CHD3	94	98.774	Panthera_pardus
ENSVVUG00000028011	CHD3	99	98.508	ENSPTRG00000008714	CHD3	99	95.685	Pan_troglodytes
ENSVVUG00000028011	CHD3	99	98.189	ENSPANG00000023938	CHD3	99	96.559	Papio_anubis
ENSVVUG00000028011	CHD3	98	76.203	ENSPKIG00000006305	chd3	95	81.466	Paramormyrops_kingsleyae
ENSVVUG00000028011	CHD3	57	89.872	ENSPSIG00000010177	CHD3	98	90.420	Pelodiscus_sinensis
ENSVVUG00000028011	CHD3	99	96.697	ENSPEMG00000014262	Chd3	95	96.697	Peromyscus_maniculatus_bairdii
ENSVVUG00000028011	CHD3	98	92.427	ENSPCIG00000005442	CHD3	98	95.241	Phascolarctos_cinereus
ENSVVUG00000028011	CHD3	96	74.251	ENSPFOG00000012464	chd3	93	72.469	Poecilia_formosa
ENSVVUG00000028011	CHD3	88	83.401	ENSPLAG00000002887	chd3	98	72.559	Poecilia_latipinna
ENSVVUG00000028011	CHD3	52	81.702	ENSPMEG00000016725	chd3	94	73.224	Poecilia_mexicana
ENSVVUG00000028011	CHD3	90	84.133	ENSPREG00000011044	chd3	96	80.014	Poecilia_reticulata
ENSVVUG00000028011	CHD3	99	95.578	ENSPPYG00000007940	CHD3	96	95.578	Pongo_abelii
ENSVVUG00000028011	CHD3	95	97.722	ENSPCAG00000004350	CHD3	92	97.891	Procavia_capensis
ENSVVUG00000028011	CHD3	99	97.922	ENSPCOG00000020952	CHD3	95	98.039	Propithecus_coquereli
ENSVVUG00000028011	CHD3	85	98.125	ENSPVAG00000016344	CHD3	83	97.743	Pteropus_vampyrus
ENSVVUG00000028011	CHD3	93	80.280	ENSPNAG00000020393	chd3	98	80.629	Pygocentrus_nattereri
ENSVVUG00000028011	CHD3	96	96.676	ENSRNOG00000009722	Chd3	100	96.676	Rattus_norvegicus
ENSVVUG00000028011	CHD3	99	94.900	ENSRBIG00000033562	CHD3	99	94.666	Rhinopithecus_bieti
ENSVVUG00000028011	CHD3	99	96.484	ENSRROG00000029554	CHD3	99	96.075	Rhinopithecus_roxellana
ENSVVUG00000028011	CHD3	99	98.402	ENSSBOG00000020719	CHD3	99	97.925	Saimiri_boliviensis_boliviensis
ENSVVUG00000028011	CHD3	99	92.279	ENSSHAG00000014412	CHD3	96	94.685	Sarcophilus_harrisii
ENSVVUG00000028011	CHD3	91	80.029	ENSSFOG00015023123	chd3	98	74.935	Scleropages_formosus
ENSVVUG00000028011	CHD3	81	91.358	ENSSMAG00000006451	chd3	99	76.703	Scophthalmus_maximus
ENSVVUG00000028011	CHD3	54	75.410	ENSSDUG00000005792	chd3	95	73.694	Seriola_dumerili
ENSVVUG00000028011	CHD3	86	84.016	ENSSPAG00000013694	chd3	98	81.383	Stegastes_partitus
ENSVVUG00000028011	CHD3	99	97.870	ENSSSCG00000021363	CHD3	100	97.983	Sus_scrofa
ENSVVUG00000028011	CHD3	75	78.007	ENSTRUG00000014990	chd3	89	76.370	Takifugu_rubripes
ENSVVUG00000028011	CHD3	99	74.490	ENSTNIG00000012998	chd3	96	73.587	Tetraodon_nigroviridis
ENSVVUG00000028011	CHD3	66	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSVVUG00000028011	CHD3	98	98.669	ENSTTRG00000010295	CHD3	93	98.530	Tursiops_truncatus
ENSVVUG00000028011	CHD3	96	97.823	ENSUAMG00000005475	CHD3	99	97.823	Ursus_americanus
ENSVVUG00000028011	CHD3	57	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSVVUG00000028011	CHD3	99	73.731	ENSXETG00000012991	chd3	92	73.536	Xenopus_tropicalis
ENSVVUG00000028011	CHD3	50	83.296	ENSXCOG00000000809	chd3	96	83.296	Xiphophorus_couchianus
ENSVVUG00000028011	CHD3	83	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus