EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000029164 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 202055 bases
Position: chrNBDQ01000080.1:1600818-1802872
Accession: 112928121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000040970	ResIII	PF04851.15	1e-07	1	1
ENSVVUP00000040967	ResIII	PF04851.15	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000053573	CHD6-201	10909	XM_026009653	ENSVVUP00000040967	2716 (aa)	XP_025865438	UPI000DF6D4AF
ENSVVUT00000053576	CHD6-202	10819	-	ENSVVUP00000040970	2686 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000029164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000029164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000029164	CHD6	59	63.233	ENSVVUG00000009444	CHD8	65	63.299
ENSVVUG00000029164	CHD6	73	69.181	ENSVVUG00000018063	CHD7	71	66.143
ENSVVUG00000029164	CHD6	79	62.620	ENSVVUG00000019435	CHD9	72	64.061

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000029164	CHD6	100	91.731	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSVVUG00000029164	CHD6	72	75.066	ENSAPOG00000013736	chd6	67	72.534	Acanthochromis_polyacanthus
ENSVVUG00000029164	CHD6	100	96.393	ENSAMEG00000009496	CHD6	100	96.393	Ailuropoda_melanoleuca
ENSVVUG00000029164	CHD6	74	74.499	ENSATEG00000005608	chd6	67	71.280	Anabas_testudineus
ENSVVUG00000029164	CHD6	99	71.851	ENSAPLG00000015592	CHD6	100	72.844	Anas_platyrhynchos
ENSVVUG00000029164	CHD6	99	67.116	ENSACAG00000006842	CHD6	99	67.993	Anolis_carolinensis
ENSVVUG00000029164	CHD6	100	91.253	ENSANAG00000037548	CHD6	99	93.394	Aotus_nancymaae
ENSVVUG00000029164	CHD6	76	73.995	ENSAMXG00000009576	chd6	77	69.958	Astyanax_mexicanus
ENSVVUG00000029164	CHD6	100	89.599	ENSBTAG00000005733	CHD6	100	89.599	Bos_taurus
ENSVVUG00000029164	CHD6	100	91.290	ENSCJAG00000017920	CHD6	99	93.211	Callithrix_jacchus
ENSVVUG00000029164	CHD6	100	99.521	ENSCAFG00000009236	CHD6	100	99.521	Canis_familiaris
ENSVVUG00000029164	CHD6	99	98.817	ENSCAFG00020012906	CHD6	100	98.701	Canis_lupus_dingo
ENSVVUG00000029164	CHD6	100	89.746	ENSCHIG00000017606	CHD6	100	89.746	Capra_hircus
ENSVVUG00000029164	CHD6	84	90.535	ENSTSYG00000014635	CHD6	100	90.535	Carlito_syrichta
ENSVVUG00000029164	CHD6	100	90.291	ENSCPOG00000015641	CHD6	100	90.291	Cavia_porcellus
ENSVVUG00000029164	CHD6	100	91.621	ENSCCAG00000036828	CHD6	99	93.394	Cebus_capucinus
ENSVVUG00000029164	CHD6	100	91.327	ENSCATG00000039248	CHD6	99	93.394	Cercocebus_atys
ENSVVUG00000029164	CHD6	100	90.239	ENSCLAG00000013743	CHD6	100	90.239	Chinchilla_lanigera
ENSVVUG00000029164	CHD6	100	91.621	ENSCSAG00000013997	CHD6	100	91.621	Chlorocebus_sabaeus
ENSVVUG00000029164	CHD6	91	90.250	ENSCHOG00000012647	CHD6	95	90.250	Choloepus_hoffmanni
ENSVVUG00000029164	CHD6	99	73.856	ENSCPBG00000019382	CHD6	99	74.222	Chrysemys_picta_bellii
ENSVVUG00000029164	CHD6	100	91.621	ENSCANG00000043435	CHD6	99	93.394	Colobus_angolensis_palliatus
ENSVVUG00000029164	CHD6	100	88.525	ENSCGRG00001002694	Chd6	100	88.562	Cricetulus_griseus_chok1gshd
ENSVVUG00000029164	CHD6	84	72.770	ENSDARG00000017244	chd6	80	72.770	Danio_rerio
ENSVVUG00000029164	CHD6	99	90.041	ENSDNOG00000004176	CHD6	99	90.041	Dasypus_novemcinctus
ENSVVUG00000029164	CHD6	99	93.168	ENSEASG00005023433	CHD6	95	97.683	Equus_asinus_asinus
ENSVVUG00000029164	CHD6	99	93.854	ENSECAG00000011761	CHD6	100	93.854	Equus_caballus
ENSVVUG00000029164	CHD6	65	80.108	ENSELUG00000012309	chd6	92	80.108	Esox_lucius
ENSVVUG00000029164	CHD6	100	95.436	ENSFCAG00000003572	CHD6	100	95.436	Felis_catus
ENSVVUG00000029164	CHD6	99	71.491	ENSFALG00000012563	CHD6	98	71.527	Ficedula_albicollis
ENSVVUG00000029164	CHD6	99	90.332	ENSFDAG00000013791	CHD6	99	90.332	Fukomys_damarensis
ENSVVUG00000029164	CHD6	73	69.335	ENSGMOG00000011715	chd6	86	69.478	Gadus_morhua
ENSVVUG00000029164	CHD6	87	64.376	ENSGACG00000000037	chd6	95	64.456	Gasterosteus_aculeatus
ENSVVUG00000029164	CHD6	100	91.768	ENSGGOG00000013123	CHD6	99	93.394	Gorilla_gorilla
ENSVVUG00000029164	CHD6	78	72.153	ENSHBUG00000014701	chd6	65	73.355	Haplochromis_burtoni
ENSVVUG00000029164	CHD6	100	90.331	ENSHGLG00000004548	CHD6	100	90.368	Heterocephalus_glaber_female
ENSVVUG00000029164	CHD6	100	90.331	ENSHGLG00100006401	CHD6	100	90.368	Heterocephalus_glaber_male
ENSVVUG00000029164	CHD6	78	75.656	ENSIPUG00000003692	chd6	75	76.845	Ictalurus_punctatus
ENSVVUG00000029164	CHD6	100	91.173	ENSSTOG00000013382	CHD6	100	91.173	Ictidomys_tridecemlineatus
ENSVVUG00000029164	CHD6	90	74.596	ENSLACG00000010881	CHD6	92	74.652	Latimeria_chalumnae
ENSVVUG00000029164	CHD6	73	80.312	ENSLOCG00000007386	chd6	83	75.725	Lepisosteus_oculatus
ENSVVUG00000029164	CHD6	100	91.250	ENSLAFG00000012144	CHD6	100	91.250	Loxodonta_africana
ENSVVUG00000029164	CHD6	100	91.694	ENSMFAG00000032830	CHD6	99	93.394	Macaca_fascicularis
ENSVVUG00000029164	CHD6	100	91.694	ENSMMUG00000020458	CHD6	99	93.394	Macaca_mulatta
ENSVVUG00000029164	CHD6	100	91.694	ENSMNEG00000040847	CHD6	99	93.394	Macaca_nemestrina
ENSVVUG00000029164	CHD6	100	91.370	ENSMLEG00000031965	CHD6	99	93.394	Mandrillus_leucophaeus
ENSVVUG00000029164	CHD6	74	73.768	ENSMAMG00000013111	chd6	65	73.960	Mastacembelus_armatus
ENSVVUG00000029164	CHD6	99	71.674	ENSMGAG00000001121	CHD6	100	72.332	Meleagris_gallopavo
ENSVVUG00000029164	CHD6	100	91.316	ENSMICG00000016641	CHD6	99	92.661	Microcebus_murinus
ENSVVUG00000029164	CHD6	89	81.124	ENSMODG00000000720	-	99	81.124	Monodelphis_domestica
ENSVVUG00000029164	CHD6	100	87.128	MGP_CAROLIEiJ_G0024604	Chd6	100	94.262	Mus_caroli
ENSVVUG00000029164	CHD6	100	87.312	ENSMUSG00000057133	Chd6	100	94.177	Mus_musculus
ENSVVUG00000029164	CHD6	100	87.017	MGP_PahariEiJ_G0026048	Chd6	100	94.599	Mus_pahari
ENSVVUG00000029164	CHD6	100	87.275	MGP_SPRETEiJ_G0025526	Chd6	100	94.262	Mus_spretus
ENSVVUG00000029164	CHD6	100	95.301	ENSMPUG00000017695	CHD6	100	95.301	Mustela_putorius_furo
ENSVVUG00000029164	CHD6	100	92.350	ENSMLUG00000016247	CHD6	100	92.350	Myotis_lucifugus
ENSVVUG00000029164	CHD6	78	73.368	ENSNBRG00000013839	chd6	79	73.451	Neolamprologus_brichardi
ENSVVUG00000029164	CHD6	100	90.048	ENSNLEG00000006496	CHD6	100	90.158	Nomascus_leucogenys
ENSVVUG00000029164	CHD6	100	86.981	ENSOPRG00000013376	-	100	86.981	Ochotona_princeps
ENSVVUG00000029164	CHD6	83	74.872	ENSONIG00000000393	chd6	86	74.872	Oreochromis_niloticus
ENSVVUG00000029164	CHD6	100	70.710	ENSOANG00000014347	CHD6	99	70.918	Ornithorhynchus_anatinus
ENSVVUG00000029164	CHD6	99	89.621	ENSOCUG00000012394	CHD6	100	89.621	Oryctolagus_cuniculus
ENSVVUG00000029164	CHD6	79	70.043	ENSORLG00020021891	chd6	95	86.172	Oryzias_latipes_hni
ENSVVUG00000029164	CHD6	99	89.937	ENSOGAG00000002427	CHD6	99	89.838	Otolemur_garnettii
ENSVVUG00000029164	CHD6	99	87.459	ENSOARG00000002597	CHD6	100	87.459	Ovis_aries
ENSVVUG00000029164	CHD6	100	95.583	ENSPPRG00000014756	CHD6	100	95.583	Panthera_pardus
ENSVVUG00000029164	CHD6	100	95.473	ENSPTIG00000011094	CHD6	100	95.473	Panthera_tigris_altaica
ENSVVUG00000029164	CHD6	100	91.804	ENSPTRG00000013504	CHD6	99	93.394	Pan_troglodytes
ENSVVUG00000029164	CHD6	100	91.694	ENSPANG00000025554	CHD6	99	93.211	Papio_anubis
ENSVVUG00000029164	CHD6	76	76.800	ENSPKIG00000005578	chd6	79	72.898	Paramormyrops_kingsleyae
ENSVVUG00000029164	CHD6	76	76.349	ENSPMGG00000014877	chd6	88	75.275	Periophthalmus_magnuspinnatus
ENSVVUG00000029164	CHD6	100	80.330	ENSPCIG00000028037	CHD6	100	80.734	Phascolarctos_cinereus
ENSVVUG00000029164	CHD6	74	70.663	ENSPLAG00000003128	chd6	65	71.875	Poecilia_latipinna
ENSVVUG00000029164	CHD6	70	73.124	ENSPREG00000022653	chd6	99	86.630	Poecilia_reticulata
ENSVVUG00000029164	CHD6	100	91.918	ENSPPYG00000011016	CHD6	100	91.918	Pongo_abelii
ENSVVUG00000029164	CHD6	99	91.679	ENSPCOG00000001089	CHD6	99	93.211	Propithecus_coquereli
ENSVVUG00000029164	CHD6	78	75.016	ENSPNYG00000022516	chd6	78	74.789	Pundamilia_nyererei
ENSVVUG00000029164	CHD6	81	70.972	ENSPNAG00000012825	chd6	79	71.230	Pygocentrus_nattereri
ENSVVUG00000029164	CHD6	100	86.502	ENSRNOG00000016744	Chd6	100	86.429	Rattus_norvegicus
ENSVVUG00000029164	CHD6	100	91.547	ENSSBOG00000022089	CHD6	99	93.394	Saimiri_boliviensis_boliviensis
ENSVVUG00000029164	CHD6	99	79.941	ENSSHAG00000017072	CHD6	99	80.345	Sarcophilus_harrisii
ENSVVUG00000029164	CHD6	80	75.911	ENSSFOG00015012920	chd6	81	72.860	Scleropages_formosus
ENSVVUG00000029164	CHD6	59	100.000	ENSSARG00000002615	-	61	100.000	Sorex_araneus
ENSVVUG00000029164	CHD6	100	92.056	ENSSSCG00000007360	CHD6	100	92.703	Sus_scrofa
ENSVVUG00000029164	CHD6	97	73.918	ENSTGUG00000003179	CHD6	99	73.842	Taeniopygia_guttata
ENSVVUG00000029164	CHD6	73	75.874	ENSTNIG00000017487	chd6	89	68.894	Tetraodon_nigroviridis
ENSVVUG00000029164	CHD6	100	89.118	ENSTTRG00000013438	CHD6	100	89.118	Tursiops_truncatus
ENSVVUG00000029164	CHD6	100	94.334	ENSUAMG00000024036	CHD6	99	95.310	Ursus_americanus
ENSVVUG00000029164	CHD6	99	96.749	ENSUMAG00000002017	CHD6	99	96.749	Ursus_maritimus
ENSVVUG00000029164	CHD6	92	92.417	ENSVPAG00000007941	CHD6	93	92.417	Vicugna_pacos
ENSVVUG00000029164	CHD6	99	60.764	ENSXETG00000021445	chd6	91	68.805	Xenopus_tropicalis