EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXCOG00000000035 (Gene tree)
Gene ID
-
Gene Symbol
csde1
Alias
fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name
cold shock domain containing E1%2C RNA-binding
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
8717 bases
Position
chrKQ557201.1:1923409-1932125
Accession
ZDB-GENE-030131-8623
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000000038CSDPF00313.222.7e-6114
ENSXCOP00000000038CSDPF00313.222.7e-6124
ENSXCOP00000000038CSDPF00313.222.7e-6134
ENSXCOP00000000038CSDPF00313.222.7e-6144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000000038-1818-ENSXCOP00000000038605 (aa)--
Gene Model
Click here to download ENSXCOG00000000035's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000000035's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000000035csde18585.455ENSG00000009307CSDE110087.500Homo_sapiens
ENSXCOG00000000035csde19985.996ENSAPOG00000015538csde19494.989Acanthochromis_polyacanthus
ENSXCOG00000000035csde19987.273ENSAMEG00000017129CSDE18787.273Ailuropoda_melanoleuca
ENSXCOG00000000035csde17293.127ENSACIG00000015175csde19993.127Amphilophus_citrinellus
ENSXCOG00000000035csde18994.553ENSAOCG00000011510csde19494.553Amphiprion_ocellaris
ENSXCOG00000000035csde18994.771ENSAPEG00000007194csde19494.771Amphiprion_percula
ENSXCOG00000000035csde18995.425ENSATEG00000003864csde19495.425Anabas_testudineus
ENSXCOG00000000035csde18587.273ENSAPLG00000008797CSDE19287.273Anas_platyrhynchos
ENSXCOG00000000035csde19987.273ENSACAG00000003120CSDE19487.273Anolis_carolinensis
ENSXCOG00000000035csde19678.378ENSANAG00000024665CSDE18885.455Aotus_nancymaae
ENSXCOG00000000035csde16662.544ENSANAG00000028396-8462.544Aotus_nancymaae
ENSXCOG00000000035csde18994.553ENSACLG00000013296csde19494.553Astatotilapia_calliptera
ENSXCOG00000000035csde18989.371ENSAMXG00000007436csde19389.371Astyanax_mexicanus
ENSXCOG00000000035csde18585.455ENSBTAG00000000678CSDE19285.455Bos_taurus
ENSXCOG00000000035csde18585.455ENSCJAG00000012565CSDE18785.455Callithrix_jacchus
ENSXCOG00000000035csde18585.455ENSCAFG00000009618CSDE18985.455Canis_familiaris
ENSXCOG00000000035csde18585.455ENSCAFG00020000481CSDE19285.455Canis_lupus_dingo
ENSXCOG00000000035csde18585.455ENSCHIG00000017250CSDE19285.455Capra_hircus
ENSXCOG00000000035csde18585.455ENSTSYG00000003747CSDE19285.455Carlito_syrichta
ENSXCOG00000000035csde19947.612ENSCAPG00000015128CSDE19347.612Cavia_aperea
ENSXCOG00000000035csde18585.455ENSCPOG00000040388CSDE19285.455Cavia_porcellus
ENSXCOG00000000035csde18078.431ENSCCAG00000033677-9278.431Cebus_capucinus
ENSXCOG00000000035csde19540.164ENSCCAG00000030878-8240.164Cebus_capucinus
ENSXCOG00000000035csde19978.378ENSCCAG00000036794CSDE19285.455Cebus_capucinus
ENSXCOG00000000035csde18585.455ENSCATG00000036962CSDE18985.455Cercocebus_atys
ENSXCOG00000000035csde18585.455ENSCLAG00000006618CSDE19285.455Chinchilla_lanigera
ENSXCOG00000000035csde18585.455ENSCSAG00000001658CSDE18785.455Chlorocebus_sabaeus
ENSXCOG00000000035csde18585.455ENSCHOG00000000918CSDE16885.455Choloepus_hoffmanni
ENSXCOG00000000035csde19987.273ENSCPBG00000016547CSDE19287.273Chrysemys_picta_bellii
ENSXCOG00000000035csde19751.667ENSCING00000014465-9051.667Ciona_intestinalis
ENSXCOG00000000035csde19951.667ENSCSAVG00000008100-9551.667Ciona_savignyi
ENSXCOG00000000035csde18585.455ENSCANG00000035096CSDE18985.455Colobus_angolensis_palliatus
ENSXCOG00000000035csde19680.074ENSCANG00000031069-9480.074Colobus_angolensis_palliatus
ENSXCOG00000000035csde19951.594ENSCGRG00001014011-9151.594Cricetulus_griseus_chok1gshd
ENSXCOG00000000035csde18585.455ENSCGRG00001016833-9285.455Cricetulus_griseus_chok1gshd
ENSXCOG00000000035csde18085.455ENSCGRG00000002225-8785.455Cricetulus_griseus_crigri
ENSXCOG00000000035csde19973.913ENSCGRG00000005831-9273.913Cricetulus_griseus_crigri
ENSXCOG00000000035csde19983.629ENSCSEG00000002620csde19492.375Cynoglossus_semilaevis
ENSXCOG00000000035csde18998.039ENSCVAG00000001344csde19498.039Cyprinodon_variegatus
ENSXCOG00000000035csde19974.460ENSDARG00000074758csde19985.284Danio_rerio
ENSXCOG00000000035csde18585.455ENSDNOG00000010287-8685.455Dasypus_novemcinctus
ENSXCOG00000000035csde16962.264ENSDNOG00000034464-9962.264Dasypus_novemcinctus
ENSXCOG00000000035csde19985.455ENSDORG00000011609Csde19285.455Dipodomys_ordii
ENSXCOG00000000035csde18660.714FBgn0263352Unr7960.714Drosophila_melanogaster
ENSXCOG00000000035csde18465.646ENSETEG00000013678-9265.646Echinops_telfairi
ENSXCOG00000000035csde17674.292ENSETEG00000006280-8774.292Echinops_telfairi
ENSXCOG00000000035csde17685.455ENSETEG00000002491-7485.455Echinops_telfairi
ENSXCOG00000000035csde18061.111ENSETEG00000007109-6861.111Echinops_telfairi
ENSXCOG00000000035csde19963.636ENSEBUG00000008647csde19663.636Eptatretus_burgeri
ENSXCOG00000000035csde18585.455ENSEASG00005006284CSDE19285.455Equus_asinus_asinus
ENSXCOG00000000035csde19985.455ENSECAG00000020885CSDE19285.455Equus_caballus
ENSXCOG00000000035csde18785.455ENSEEUG00000006286CSDE16885.455Erinaceus_europaeus
ENSXCOG00000000035csde19982.318ENSELUG00000015507csde19488.121Esox_lucius
ENSXCOG00000000035csde18585.455ENSFCAG00000029266CSDE19285.455Felis_catus
ENSXCOG00000000035csde18587.273ENSFALG00000003407CSDE19287.273Ficedula_albicollis
ENSXCOG00000000035csde18585.455ENSFDAG00000007882CSDE19285.455Fukomys_damarensis
ENSXCOG00000000035csde18998.911ENSFHEG00000010799csde19698.911Fundulus_heteroclitus
ENSXCOG00000000035csde19983.640ENSGMOG00000012731csde19583.640Gadus_morhua
ENSXCOG00000000035csde18587.273ENSGALG00000002139CSDE19387.273Gallus_gallus
ENSXCOG00000000035csde17699.564ENSGAFG00000005241csde19399.564Gambusia_affinis
ENSXCOG00000000035csde18888.525ENSGACG00000004544csde19588.525Gasterosteus_aculeatus
ENSXCOG00000000035csde18587.273ENSGAGG00000017685CSDE19287.273Gopherus_agassizii
ENSXCOG00000000035csde19978.041ENSGGOG00000002164CSDE19485.455Gorilla_gorilla
ENSXCOG00000000035csde18994.553ENSHBUG00000020315csde19494.553Haplochromis_burtoni
ENSXCOG00000000035csde18482.692ENSHGLG00000019549-9182.692Heterocephalus_glaber_female
ENSXCOG00000000035csde19959.708ENSHGLG00000003829-9259.708Heterocephalus_glaber_female
ENSXCOG00000000035csde19966.365ENSHGLG00000009620-9266.515Heterocephalus_glaber_female
ENSXCOG00000000035csde17788.889ENSHGLG00000010039-8688.889Heterocephalus_glaber_female
ENSXCOG00000000035csde19953.846ENSHGLG00000007471-9253.846Heterocephalus_glaber_female
ENSXCOG00000000035csde19955.298ENSHGLG00000000650-9155.298Heterocephalus_glaber_female
ENSXCOG00000000035csde19570.360ENSHGLG00000008555-9370.360Heterocephalus_glaber_female
ENSXCOG00000000035csde19963.913ENSHGLG00100004195-9963.913Heterocephalus_glaber_male
ENSXCOG00000000035csde17788.889ENSHGLG00100006910-8688.889Heterocephalus_glaber_male
ENSXCOG00000000035csde110058.874ENSHGLG00100002245-9258.874Heterocephalus_glaber_male
ENSXCOG00000000035csde19956.350ENSHGLG00100012072-9356.350Heterocephalus_glaber_male
ENSXCOG00000000035csde19543.296ENSHGLG00100004833-8943.296Heterocephalus_glaber_male
ENSXCOG00000000035csde19982.692ENSHGLG00100001846-9682.353Heterocephalus_glaber_male
ENSXCOG00000000035csde18385.455ENSHGLG00100007287-9285.455Heterocephalus_glaber_male
ENSXCOG00000000035csde18585.455ENSHGLG00100019438-9285.455Heterocephalus_glaber_male
ENSXCOG00000000035csde18991.721ENSHCOG00000004158csde19491.721Hippocampus_comes
ENSXCOG00000000035csde18987.636ENSIPUG00000000355csde19487.636Ictalurus_punctatus
ENSXCOG00000000035csde18577.778ENSSTOG00000030994-9277.778Ictidomys_tridecemlineatus
ENSXCOG00000000035csde19769.111ENSSTOG00000032722-7769.111Ictidomys_tridecemlineatus
ENSXCOG00000000035csde18585.455ENSJJAG00000019571Csde19285.455Jaculus_jaculus
ENSXCOG00000000035csde18988.525ENSKMAG00000005685csde19587.805Kryptolebias_marmoratus
ENSXCOG00000000035csde19985.010ENSLBEG00000014770csde19085.010Labrus_bergylta
ENSXCOG00000000035csde18587.037ENSLACG00000018452CSDE18987.037Latimeria_chalumnae
ENSXCOG00000000035csde18981.148ENSLOCG00000010413csde18981.148Lepisosteus_oculatus
ENSXCOG00000000035csde18587.273ENSLAFG00000007150CSDE18887.273Loxodonta_africana
ENSXCOG00000000035csde18585.455ENSMFAG00000003674CSDE19285.455Macaca_fascicularis
ENSXCOG00000000035csde18585.714ENSMMUG00000001974CSDE110085.714Macaca_mulatta
ENSXCOG00000000035csde18585.455ENSMNEG00000045247CSDE18985.455Macaca_nemestrina
ENSXCOG00000000035csde18581.818ENSMLEG00000038673CSDE18781.818Mandrillus_leucophaeus
ENSXCOG00000000035csde19986.193ENSMAMG00000008821csde19495.207Mastacembelus_armatus
ENSXCOG00000000035csde18994.553ENSMZEG00005021675csde19494.553Maylandia_zebra
ENSXCOG00000000035csde18587.273ENSMGAG00000016381CSDE19387.273Meleagris_gallopavo
ENSXCOG00000000035csde18585.455ENSMAUG00000014031Csde19285.455Mesocricetus_auratus
ENSXCOG00000000035csde19985.455ENSMICG00000002050CSDE18885.455Microcebus_murinus
ENSXCOG00000000035csde18585.455ENSMOCG00000018960Csde19285.455Microtus_ochrogaster
ENSXCOG00000000035csde18995.207ENSMMOG00000015075csde19495.207Mola_mola
ENSXCOG00000000035csde18585.455ENSMODG00000004685CSDE19285.455Monodelphis_domestica
ENSXCOG00000000035csde18994.336ENSMALG00000007132csde19494.336Monopterus_albus
ENSXCOG00000000035csde18585.455MGP_CAROLIEiJ_G0025444Csde110086.755Mus_caroli
ENSXCOG00000000035csde18587.273ENSMUSG00000068823Csde110086.755Mus_musculus
ENSXCOG00000000035csde18585.455MGP_PahariEiJ_G0026888Csde110086.755Mus_pahari
ENSXCOG00000000035csde18585.455MGP_SPRETEiJ_G0026394Csde110086.755Mus_spretus
ENSXCOG00000000035csde18585.455ENSMPUG00000005753CSDE19485.455Mustela_putorius_furo
ENSXCOG00000000035csde18585.455ENSMLUG00000005681CSDE18785.455Myotis_lucifugus
ENSXCOG00000000035csde19531.481ENSNGAG00000012599-8531.481Nannospalax_galili
ENSXCOG00000000035csde18585.455ENSNGAG00000021929Csde19285.455Nannospalax_galili
ENSXCOG00000000035csde18994.553ENSNBRG00000020808csde19494.553Neolamprologus_brichardi
ENSXCOG00000000035csde19978.041ENSNLEG00000004842CSDE18985.455Nomascus_leucogenys
ENSXCOG00000000035csde18585.455ENSMEUG00000002677CSDE19485.455Notamacropus_eugenii
ENSXCOG00000000035csde18585.455ENSOPRG00000005002CSDE17785.455Ochotona_princeps
ENSXCOG00000000035csde19985.455ENSODEG00000007383-9285.455Octodon_degus
ENSXCOG00000000035csde19538.710ENSODEG00000005979-8238.710Octodon_degus
ENSXCOG00000000035csde18985.602ENSONIG00000009309csde19585.602Oreochromis_niloticus
ENSXCOG00000000035csde17677.597ENSOANG00000003346-7377.597Ornithorhynchus_anatinus
ENSXCOG00000000035csde19985.455ENSOCUG00000016438CSDE18785.455Oryctolagus_cuniculus
ENSXCOG00000000035csde19984.024ENSORLG00000000707csde19492.810Oryzias_latipes
ENSXCOG00000000035csde19983.826ENSORLG00020005148csde19583.826Oryzias_latipes_hni
ENSXCOG00000000035csde19983.826ENSORLG00015019415csde19492.593Oryzias_latipes_hsok
ENSXCOG00000000035csde19982.840ENSOMEG00000015656csde19492.810Oryzias_melastigma
ENSXCOG00000000035csde18585.455ENSOGAG00000012127CSDE18785.455Otolemur_garnettii
ENSXCOG00000000035csde18585.455ENSOARG00000020034CSDE18785.455Ovis_aries
ENSXCOG00000000035csde19978.041ENSPPAG00000025861CSDE19285.455Pan_paniscus
ENSXCOG00000000035csde18585.455ENSPPRG00000006747CSDE18785.455Panthera_pardus
ENSXCOG00000000035csde18585.455ENSPTIG00000015468CSDE19285.455Panthera_tigris_altaica
ENSXCOG00000000035csde19978.041ENSPTRG00000033721CSDE19285.455Pan_troglodytes
ENSXCOG00000000035csde18585.455ENSPANG00000018873CSDE19285.455Papio_anubis
ENSXCOG00000000035csde19971.240ENSPKIG00000009459csde19471.240Paramormyrops_kingsleyae
ENSXCOG00000000035csde19977.533ENSPSIG00000003823CSDE19677.533Pelodiscus_sinensis
ENSXCOG00000000035csde18992.391ENSPMGG00000000772csde19392.391Periophthalmus_magnuspinnatus
ENSXCOG00000000035csde18585.455ENSPEMG00000020357-9285.455Peromyscus_maniculatus_bairdii
ENSXCOG00000000035csde18585.455ENSPCIG00000022587CSDE19285.455Phascolarctos_cinereus
ENSXCOG00000000035csde18598.876ENSPFOG00000012664csde19397.598Poecilia_formosa
ENSXCOG00000000035csde18588.202ENSPLAG00000017680csde18988.202Poecilia_latipinna
ENSXCOG00000000035csde19674.684ENSPMEG00000005094csde19174.684Poecilia_mexicana
ENSXCOG00000000035csde18991.503ENSPREG00000011631csde19491.503Poecilia_reticulata
ENSXCOG00000000035csde18585.455ENSPPYG00000000996CSDE19285.455Pongo_abelii
ENSXCOG00000000035csde19985.455ENSPCAG00000014368CSDE18785.455Procavia_capensis
ENSXCOG00000000035csde19985.455ENSPCOG00000017893CSDE110085.714Propithecus_coquereli
ENSXCOG00000000035csde19771.004ENSPCOG00000008223-9271.004Propithecus_coquereli
ENSXCOG00000000035csde18585.455ENSPVAG00000008225CSDE18785.455Pteropus_vampyrus
ENSXCOG00000000035csde18994.553ENSPNYG00000013745csde19494.553Pundamilia_nyererei
ENSXCOG00000000035csde18990.022ENSPNAG00000001958csde19390.022Pygocentrus_nattereri
ENSXCOG00000000035csde18585.455ENSRNOG00000061058Csde19285.455Rattus_norvegicus
ENSXCOG00000000035csde19985.455ENSRBIG00000038088-9185.455Rhinopithecus_bieti
ENSXCOG00000000035csde18575.108ENSRBIG00000038966-8775.108Rhinopithecus_bieti
ENSXCOG00000000035csde18585.455ENSRROG00000043101CSDE18985.455Rhinopithecus_roxellana
ENSXCOG00000000035csde18585.455ENSSBOG00000035592CSDE18885.455Saimiri_boliviensis_boliviensis
ENSXCOG00000000035csde18585.455ENSSHAG00000009831CSDE19285.455Sarcophilus_harrisii
ENSXCOG00000000035csde18985.217ENSSFOG00015007498csde19485.217Scleropages_formosus
ENSXCOG00000000035csde19193.900ENSSMAG00000007203csde19493.900Scophthalmus_maximus
ENSXCOG00000000035csde19985.996ENSSDUG00000015380csde19494.989Seriola_dumerili
ENSXCOG00000000035csde18994.989ENSSLDG00000008819csde19494.989Seriola_lalandi_dorsalis
ENSXCOG00000000035csde18885.455ENSSARG00000000738CSDE18785.455Sorex_araneus
ENSXCOG00000000035csde18687.273ENSSPUG00000008714CSDE19687.273Sphenodon_punctatus
ENSXCOG00000000035csde19976.809ENSSPAG00000000716csde19476.809Stegastes_partitus
ENSXCOG00000000035csde18585.455ENSSSCG00000006752CSDE19285.455Sus_scrofa
ENSXCOG00000000035csde18587.273ENSTGUG00000000972CSDE19287.273Taeniopygia_guttata
ENSXCOG00000000035csde18990.850ENSTRUG00000007996csde19390.850Takifugu_rubripes
ENSXCOG00000000035csde19983.525ENSTNIG00000010878csde110083.525Tetraodon_nigroviridis
ENSXCOG00000000035csde18587.273ENSTTRG00000015583CSDE18787.273Tursiops_truncatus
ENSXCOG00000000035csde17783.333ENSUAMG00000024289-9983.333Ursus_americanus
ENSXCOG00000000035csde19783.062ENSUAMG00000021779-9883.062Ursus_americanus
ENSXCOG00000000035csde18583.636ENSUMAG00000009720-9783.636Ursus_maritimus
ENSXCOG00000000035csde16785.455ENSUMAG00000011714-8585.455Ursus_maritimus
ENSXCOG00000000035csde18280.698ENSVPAG00000000749CSDE16180.698Vicugna_pacos
ENSXCOG00000000035csde17675.764ENSVVUG00000009890CSDE17975.764Vulpes_vulpes
ENSXCOG00000000035csde19967.683ENSXETG00000021448csde19277.236Xenopus_tropicalis
ENSXCOG00000000035csde189100.000ENSXMAG00000009080csde194100.000Xiphophorus_maculatus

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