EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000000254 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 4759 bases
Position: chrKQ557225.1:43405293-43410051
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000000265	zf-C2H2	PF00096.26	1e-14	1	3
ENSXCOP00000000265	zf-C2H2	PF00096.26	1e-14	2	3
ENSXCOP00000000265	zf-C2H2	PF00096.26	1e-14	3	3
ENSXCOP00000000265	zf-met	PF12874.7	7.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000000272	-	507	-	ENSXCOP00000000265	168 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000000254's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000000254's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000000254	-	58	40.404	ENSXCOG00000015084	snai2	51	40.404
ENSXCOG00000000254	-	86	47.312	ENSXCOG00000003538	-	97	47.312
ENSXCOG00000000254	-	58	45.161	ENSXCOG00000003537	-	74	45.161
ENSXCOG00000000254	-	73	47.253	ENSXCOG00000003530	-	81	47.253
ENSXCOG00000000254	-	62	51.613	ENSXCOG00000003532	-	75	51.613
ENSXCOG00000000254	-	75	55.914	ENSXCOG00000007529	-	96	66.667
ENSXCOG00000000254	-	92	44.828	ENSXCOG00000009597	ZNF319	63	44.828
ENSXCOG00000000254	-	71	42.982	ENSXCOG00000007076	-	99	42.982
ENSXCOG00000000254	-	78	51.042	ENSXCOG00000003472	-	91	51.042
ENSXCOG00000000254	-	80	50.538	ENSXCOG00000007406	-	99	50.515
ENSXCOG00000000254	-	83	47.917	ENSXCOG00000008083	-	97	50.538
ENSXCOG00000000254	-	73	51.042	ENSXCOG00000019457	-	89	53.191
ENSXCOG00000000254	-	77	41.096	ENSXCOG00000008003	-	53	41.096
ENSXCOG00000000254	-	65	42.268	ENSXCOG00000009772	-	89	42.268
ENSXCOG00000000254	-	60	43.564	ENSXCOG00000009777	-	55	43.564
ENSXCOG00000000254	-	63	51.546	ENSXCOG00000001292	-	80	51.546
ENSXCOG00000000254	-	60	61.017	ENSXCOG00000015312	-	86	61.017
ENSXCOG00000000254	-	68	45.652	ENSXCOG00000002714	-	74	45.652
ENSXCOG00000000254	-	71	47.917	ENSXCOG00000019377	-	93	47.917
ENSXCOG00000000254	-	63	59.016	ENSXCOG00000007979	-	67	59.016
ENSXCOG00000000254	-	60	50.515	ENSXCOG00000008978	-	91	50.515
ENSXCOG00000000254	-	58	53.125	ENSXCOG00000002512	-	67	53.125
ENSXCOG00000000254	-	62	59.524	ENSXCOG00000010567	-	90	54.348
ENSXCOG00000000254	-	68	52.830	ENSXCOG00000018615	-	98	52.830
ENSXCOG00000000254	-	62	40.506	ENSXCOG00000015435	-	79	40.506
ENSXCOG00000000254	-	67	44.681	ENSXCOG00000012924	-	90	44.681
ENSXCOG00000000254	-	64	50.000	ENSXCOG00000012921	-	94	50.000
ENSXCOG00000000254	-	61	46.237	ENSXCOG00000014361	-	58	46.237
ENSXCOG00000000254	-	60	51.807	ENSXCOG00000014363	-	55	51.807
ENSXCOG00000000254	-	68	43.158	ENSXCOG00000017871	zgc:113343	65	43.158
ENSXCOG00000000254	-	65	48.544	ENSXCOG00000007941	-	90	48.544
ENSXCOG00000000254	-	68	48.193	ENSXCOG00000009668	-	79	48.193
ENSXCOG00000000254	-	78	44.898	ENSXCOG00000009665	-	83	47.500
ENSXCOG00000000254	-	63	46.602	ENSXCOG00000007396	-	89	46.602
ENSXCOG00000000254	-	89	45.361	ENSXCOG00000003451	-	95	45.361
ENSXCOG00000000254	-	86	46.316	ENSXCOG00000009997	-	60	46.316
ENSXCOG00000000254	-	63	40.426	ENSXCOG00000009992	zbtb47b	85	40.426
ENSXCOG00000000254	-	69	53.684	ENSXCOG00000015441	-	85	53.684
ENSXCOG00000000254	-	66	74.468	ENSXCOG00000002898	-	82	74.468
ENSXCOG00000000254	-	61	45.556	ENSXCOG00000012458	-	64	45.556
ENSXCOG00000000254	-	86	49.541	ENSXCOG00000016567	-	89	49.541
ENSXCOG00000000254	-	60	56.436	ENSXCOG00000000354	-	67	56.436
ENSXCOG00000000254	-	58	50.000	ENSXCOG00000009798	-	67	50.000
ENSXCOG00000000254	-	69	46.154	ENSXCOG00000009794	-	75	46.154
ENSXCOG00000000254	-	70	46.000	ENSXCOG00000016307	-	88	47.619
ENSXCOG00000000254	-	75	53.763	ENSXCOG00000006553	-	85	53.763
ENSXCOG00000000254	-	67	55.914	ENSXCOG00000002473	-	91	55.914
ENSXCOG00000000254	-	58	44.156	ENSXCOG00000018315	-	52	44.156
ENSXCOG00000000254	-	73	52.137	ENSXCOG00000007414	-	95	52.137
ENSXCOG00000000254	-	67	48.696	ENSXCOG00000007413	-	67	48.696
ENSXCOG00000000254	-	71	51.613	ENSXCOG00000007994	-	93	51.613
ENSXCOG00000000254	-	66	46.237	ENSXCOG00000008567	prdm5	54	46.237
ENSXCOG00000000254	-	61	47.312	ENSXCOG00000003484	-	57	47.312
ENSXCOG00000000254	-	79	42.308	ENSXCOG00000007499	zbtb41	61	42.308
ENSXCOG00000000254	-	88	60.256	ENSXCOG00000019443	-	97	58.140
ENSXCOG00000000254	-	60	43.373	ENSXCOG00000009186	-	89	43.373
ENSXCOG00000000254	-	63	52.326	ENSXCOG00000001226	-	89	50.538
ENSXCOG00000000254	-	58	45.455	ENSXCOG00000009768	-	74	45.455
ENSXCOG00000000254	-	65	51.163	ENSXCOG00000019382	-	76	51.163
ENSXCOG00000000254	-	66	45.161	ENSXCOG00000003435	-	84	45.161
ENSXCOG00000000254	-	63	46.875	ENSXCOG00000003431	-	79	46.875
ENSXCOG00000000254	-	58	46.341	ENSXCOG00000003438	-	50	46.341
ENSXCOG00000000254	-	65	54.255	ENSXCOG00000019492	-	97	50.000
ENSXCOG00000000254	-	72	47.561	ENSXCOG00000019149	znf526	51	47.561
ENSXCOG00000000254	-	64	42.000	ENSXCOG00000011372	-	75	42.000
ENSXCOG00000000254	-	68	42.453	ENSXCOG00000010950	si:dkey-210j14.3	65	42.453
ENSXCOG00000000254	-	62	58.036	ENSXCOG00000006614	-	92	54.167
ENSXCOG00000000254	-	92	53.731	ENSXCOG00000007376	-	94	53.731
ENSXCOG00000000254	-	67	48.276	ENSXCOG00000013870	-	72	48.276
ENSXCOG00000000254	-	64	38.835	ENSXCOG00000013504	znf384l	51	38.835
ENSXCOG00000000254	-	68	52.688	ENSXCOG00000007368	-	92	52.688
ENSXCOG00000000254	-	71	53.608	ENSXCOG00000016860	-	97	56.410
ENSXCOG00000000254	-	88	46.591	ENSXCOG00000015947	-	97	44.898
ENSXCOG00000000254	-	60	38.043	ENSXCOG00000003001	-	85	38.043
ENSXCOG00000000254	-	63	48.958	ENSXCOG00000007937	-	79	48.958
ENSXCOG00000000254	-	61	38.710	ENSXCOG00000009674	-	82	38.710
ENSXCOG00000000254	-	64	49.462	ENSXCOG00000006951	-	69	49.462
ENSXCOG00000000254	-	64	44.444	ENSXCOG00000013066	-	67	44.444
ENSXCOG00000000254	-	70	48.889	ENSXCOG00000003468	-	84	48.387
ENSXCOG00000000254	-	77	56.989	ENSXCOG00000001116	-	97	56.989
ENSXCOG00000000254	-	65	50.000	ENSXCOG00000017328	-	85	50.000
ENSXCOG00000000254	-	71	51.613	ENSXCOG00000009003	-	94	51.613
ENSXCOG00000000254	-	73	54.217	ENSXCOG00000001200	-	92	53.465
ENSXCOG00000000254	-	58	47.727	ENSXCOG00000009785	-	63	47.727
ENSXCOG00000000254	-	63	50.602	ENSXCOG00000009781	-	64	50.602
ENSXCOG00000000254	-	63	51.064	ENSXCOG00000007945	-	88	51.064
ENSXCOG00000000254	-	88	49.351	ENSXCOG00000008116	-	88	49.351
ENSXCOG00000000254	-	52	58.065	ENSXCOG00000007420	-	95	58.065
ENSXCOG00000000254	-	67	52.000	ENSXCOG00000010488	-	57	52.000
ENSXCOG00000000254	-	61	46.237	ENSXCOG00000020768	-	74	46.237
ENSXCOG00000000254	-	61	36.250	ENSXCOG00000020769	-	78	36.250
ENSXCOG00000000254	-	62	45.161	ENSXCOG00000003896	-	60	45.161
ENSXCOG00000000254	-	58	48.387	ENSXCOG00000007987	-	80	48.387
ENSXCOG00000000254	-	64	54.386	ENSXCOG00000007981	-	88	54.386
ENSXCOG00000000254	-	58	53.125	ENSXCOG00000003499	-	54	53.125
ENSXCOG00000000254	-	89	45.833	ENSXCOG00000003493	-	75	45.833
ENSXCOG00000000254	-	68	53.191	ENSXCOG00000008062	-	96	53.191
ENSXCOG00000000254	-	58	50.000	ENSXCOG00000010576	-	69	50.000
ENSXCOG00000000254	-	59	44.444	ENSXCOG00000013306	-	50	44.444
ENSXCOG00000000254	-	92	46.237	ENSXCOG00000002857	-	94	46.667
ENSXCOG00000000254	-	68	54.639	ENSXCOG00000011725	-	96	53.125
ENSXCOG00000000254	-	69	51.579	ENSXCOG00000010259	-	53	51.579
ENSXCOG00000000254	-	72	50.000	ENSXCOG00000019482	-	90	50.000
ENSXCOG00000000254	-	63	47.826	ENSXCOG00000019481	-	85	47.826
ENSXCOG00000000254	-	70	50.538	ENSXCOG00000019484	-	95	50.538
ENSXCOG00000000254	-	87	55.224	ENSXCOG00000007957	-	86	54.651
ENSXCOG00000000254	-	63	62.500	ENSXCOG00000016117	-	97	62.500
ENSXCOG00000000254	-	86	54.639	ENSXCOG00000013004	-	75	54.639
ENSXCOG00000000254	-	75	41.935	ENSXCOG00000003441	-	56	47.312
ENSXCOG00000000254	-	99	49.383	ENSXCOG00000019401	-	96	49.383
ENSXCOG00000000254	-	58	57.143	ENSXCOG00000018253	-	92	57.143
ENSXCOG00000000254	-	71	41.111	ENSXCOG00000012645	-	51	41.111
ENSXCOG00000000254	-	68	66.216	ENSXCOG00000007139	-	74	66.216
ENSXCOG00000000254	-	90	39.394	ENSXCOG00000002869	-	81	39.344
ENSXCOG00000000254	-	60	47.312	ENSXCOG00000003093	-	82	47.312
ENSXCOG00000000254	-	90	54.255	ENSXCOG00000000528	-	89	53.608

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000000254	-	76	48.837	ENSAPOG00000019138	-	67	48.837	Acanthochromis_polyacanthus
ENSXCOG00000000254	-	92	42.553	ENSAPOG00000008319	-	52	42.553	Acanthochromis_polyacanthus
ENSXCOG00000000254	-	85	46.602	ENSACIG00000007464	-	69	46.602	Amphilophus_citrinellus
ENSXCOG00000000254	-	60	45.000	ENSACIG00000017892	-	59	45.000	Amphilophus_citrinellus
ENSXCOG00000000254	-	58	47.917	ENSACIG00000004641	-	56	47.917	Amphilophus_citrinellus
ENSXCOG00000000254	-	88	43.678	ENSAOCG00000015944	-	58	43.678	Amphiprion_ocellaris
ENSXCOG00000000254	-	61	53.226	ENSAOCG00000016897	-	64	53.226	Amphiprion_ocellaris
ENSXCOG00000000254	-	58	34.694	ENSAOCG00000006744	-	71	34.694	Amphiprion_ocellaris
ENSXCOG00000000254	-	65	37.634	ENSAOCG00000001325	-	63	37.634	Amphiprion_ocellaris
ENSXCOG00000000254	-	88	43.678	ENSAOCG00000014769	-	64	43.678	Amphiprion_ocellaris
ENSXCOG00000000254	-	62	53.226	ENSAPEG00000001556	-	64	53.226	Amphiprion_percula
ENSXCOG00000000254	-	63	43.548	ENSAPEG00000010013	-	55	42.268	Amphiprion_percula
ENSXCOG00000000254	-	76	44.643	ENSATEG00000018931	-	82	44.643	Anabas_testudineus
ENSXCOG00000000254	-	67	42.056	ENSACLG00000011658	-	86	42.056	Astatotilapia_calliptera
ENSXCOG00000000254	-	66	42.373	ENSACLG00000005694	-	51	42.373	Astatotilapia_calliptera
ENSXCOG00000000254	-	61	41.333	ENSACLG00000019154	-	83	41.333	Astatotilapia_calliptera
ENSXCOG00000000254	-	62	42.647	ENSCING00000002128	zf(c2h2)-35	62	42.647	Ciona_intestinalis
ENSXCOG00000000254	-	60	45.570	ENSCSEG00000015593	-	93	45.570	Cynoglossus_semilaevis
ENSXCOG00000000254	-	58	50.000	ENSCSEG00000010453	-	54	50.000	Cynoglossus_semilaevis
ENSXCOG00000000254	-	55	42.857	ENSCSEG00000010264	-	55	42.857	Cynoglossus_semilaevis
ENSXCOG00000000254	-	68	43.636	ENSCVAG00000003250	-	67	43.636	Cyprinodon_variegatus
ENSXCOG00000000254	-	62	48.148	ENSCVAG00000012682	-	58	48.148	Cyprinodon_variegatus
ENSXCOG00000000254	-	66	44.828	ENSCVAG00000006653	-	64	44.828	Cyprinodon_variegatus
ENSXCOG00000000254	-	58	48.387	ENSCVAG00000015616	-	74	48.387	Cyprinodon_variegatus
ENSXCOG00000000254	-	63	44.444	ENSCVAG00000020141	-	62	44.444	Cyprinodon_variegatus
ENSXCOG00000000254	-	72	47.872	ENSEBUG00000002290	-	62	47.872	Eptatretus_burgeri
ENSXCOG00000000254	-	75	43.820	ENSEBUG00000007931	-	60	43.820	Eptatretus_burgeri
ENSXCOG00000000254	-	63	43.617	ENSEBUG00000014432	-	70	43.617	Eptatretus_burgeri
ENSXCOG00000000254	-	82	46.667	ENSELUG00000024007	-	64	46.667	Esox_lucius
ENSXCOG00000000254	-	84	36.986	ENSELUG00000001909	-	72	36.986	Esox_lucius
ENSXCOG00000000254	-	71	41.304	ENSGAFG00000001879	-	64	41.304	Gambusia_affinis
ENSXCOG00000000254	-	63	46.479	ENSGAFG00000007528	-	55	46.479	Gambusia_affinis
ENSXCOG00000000254	-	86	50.538	ENSGAFG00000008204	-	68	50.538	Gambusia_affinis
ENSXCOG00000000254	-	64	43.333	ENSHBUG00000006656	-	60	43.333	Haplochromis_burtoni
ENSXCOG00000000254	-	58	49.296	ENSHCOG00000020670	-	72	49.296	Hippocampus_comes
ENSXCOG00000000254	-	61	51.685	ENSHCOG00000001873	-	54	51.685	Hippocampus_comes
ENSXCOG00000000254	-	61	51.685	ENSHCOG00000008550	-	54	51.685	Hippocampus_comes
ENSXCOG00000000254	-	56	50.746	ENSHCOG00000015497	-	72	50.746	Hippocampus_comes
ENSXCOG00000000254	-	67	50.000	ENSHCOG00000013489	-	93	50.000	Hippocampus_comes
ENSXCOG00000000254	-	64	38.272	ENSKMAG00000014184	-	59	35.106	Kryptolebias_marmoratus
ENSXCOG00000000254	-	70	38.235	ENSKMAG00000007699	-	62	38.235	Kryptolebias_marmoratus
ENSXCOG00000000254	-	65	45.556	ENSLBEG00000007106	-	67	45.556	Labrus_bergylta
ENSXCOG00000000254	-	71	37.113	ENSLBEG00000017424	-	95	37.113	Labrus_bergylta
ENSXCOG00000000254	-	58	39.785	ENSLBEG00000006161	-	67	39.785	Labrus_bergylta
ENSXCOG00000000254	-	72	44.643	ENSLBEG00000001132	-	70	44.643	Labrus_bergylta
ENSXCOG00000000254	-	60	44.118	ENSLBEG00000011210	-	51	44.118	Labrus_bergylta
ENSXCOG00000000254	-	75	45.098	ENSLOCG00000004208	-	97	45.098	Lepisosteus_oculatus
ENSXCOG00000000254	-	77	46.429	ENSMAMG00000017939	-	71	46.429	Mastacembelus_armatus
ENSXCOG00000000254	-	61	45.349	ENSMZEG00005013907	-	76	45.349	Maylandia_zebra
ENSXCOG00000000254	-	57	40.260	ENSMMOG00000013330	-	53	40.260	Mola_mola
ENSXCOG00000000254	-	88	39.583	ENSMALG00000004279	-	78	39.583	Monopterus_albus
ENSXCOG00000000254	-	75	39.286	ENSONIG00000005050	-	86	39.286	Oreochromis_niloticus
ENSXCOG00000000254	-	67	44.828	ENSONIG00000007967	-	55	44.828	Oreochromis_niloticus
ENSXCOG00000000254	-	62	51.136	ENSORLG00000021885	-	60	51.136	Oryzias_latipes
ENSXCOG00000000254	-	94	48.810	ENSORLG00000002268	-	72	48.810	Oryzias_latipes
ENSXCOG00000000254	-	62	45.000	ENSORLG00020018921	-	73	45.000	Oryzias_latipes_hni
ENSXCOG00000000254	-	78	49.425	ENSORLG00015018099	-	68	49.425	Oryzias_latipes_hsok
ENSXCOG00000000254	-	61	41.509	ENSOMEG00000005578	-	63	41.509	Oryzias_melastigma
ENSXCOG00000000254	-	84	44.000	ENSPMGG00000002455	-	77	49.367	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	66	50.000	ENSPMGG00000009571	-	73	50.000	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	58	43.333	ENSPMGG00000019750	-	76	43.333	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	90	42.453	ENSPMGG00000006928	-	56	42.453	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	57	48.837	ENSPMGG00000002659	-	75	48.837	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	64	44.444	ENSPMGG00000002661	-	62	44.444	Periophthalmus_magnuspinnatus
ENSXCOG00000000254	-	58	39.394	ENSPMAG00000004189	-	87	39.394	Petromyzon_marinus
ENSXCOG00000000254	-	58	47.619	ENSPMAG00000000839	-	93	47.619	Petromyzon_marinus
ENSXCOG00000000254	-	61	40.351	ENSPMAG00000002022	-	95	40.351	Petromyzon_marinus
ENSXCOG00000000254	-	71	42.708	ENSPFOG00000009491	-	61	42.708	Poecilia_formosa
ENSXCOG00000000254	-	68	48.571	ENSPFOG00000018860	-	99	48.571	Poecilia_formosa
ENSXCOG00000000254	-	65	50.000	ENSPLAG00000010067	-	67	50.000	Poecilia_latipinna
ENSXCOG00000000254	-	75	43.590	ENSPLAG00000014832	-	85	43.590	Poecilia_latipinna
ENSXCOG00000000254	-	75	48.571	ENSPLAG00000008941	-	88	48.571	Poecilia_latipinna
ENSXCOG00000000254	-	75	43.590	ENSPMEG00000005210	-	85	43.590	Poecilia_mexicana
ENSXCOG00000000254	-	71	42.708	ENSPMEG00000024117	-	61	42.708	Poecilia_mexicana
ENSXCOG00000000254	-	58	51.948	ENSPMEG00000002953	-	54	51.948	Poecilia_mexicana
ENSXCOG00000000254	-	74	41.111	ENSPREG00000002603	-	74	41.111	Poecilia_reticulata
ENSXCOG00000000254	-	55	47.312	ENSPREG00000009488	-	97	47.312	Poecilia_reticulata
ENSXCOG00000000254	-	58	51.163	ENSPNYG00000017888	-	50	51.163	Pundamilia_nyererei
ENSXCOG00000000254	-	75	37.079	ENSPNAG00000005946	-	77	37.079	Pygocentrus_nattereri
ENSXCOG00000000254	-	55	54.839	ENSSFOG00015011531	-	81	54.839	Scleropages_formosus
ENSXCOG00000000254	-	65	45.902	ENSSMAG00000013291	-	91	41.429	Scophthalmus_maximus
ENSXCOG00000000254	-	92	44.828	ENSSDUG00000013048	-	52	44.828	Seriola_dumerili
ENSXCOG00000000254	-	92	44.828	ENSSLDG00000011849	-	51	44.828	Seriola_lalandi_dorsalis
ENSXCOG00000000254	-	57	40.506	ENSSLDG00000014436	-	71	40.506	Seriola_lalandi_dorsalis
ENSXCOG00000000254	-	93	45.070	ENSSPAG00000011544	-	66	45.070	Stegastes_partitus
ENSXCOG00000000254	-	64	44.928	ENSSPAG00000011533	-	89	44.928	Stegastes_partitus
ENSXCOG00000000254	-	78	44.048	ENSXETG00000012506	znf91	100	44.048	Xenopus_tropicalis
ENSXCOG00000000254	-	56	46.667	ENSXMAG00000023199	-	88	46.667	Xiphophorus_maculatus
ENSXCOG00000000254	-	59	45.455	ENSXMAG00000022657	-	56	45.455	Xiphophorus_maculatus