EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000000506 (Gene tree)
Gene ID: -
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1 ribosome biogenesis factor
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 23714 bases
Position: chrKQ557202.1:2327343-2351056
Accession: ZDB-GENE-060720-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000000618	AARP2CN	PF08142.12	3.4e-32	1	1
ENSXCOP00000000614	AARP2CN	PF08142.12	5.1e-32	1	1
ENSXCOP00000000601	AARP2CN	PF08142.12	8.9e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000000628	-	3492	-	ENSXCOP00000000618	1163 (aa)	-	-
ENSXCOT00000000624	-	3525	-	ENSXCOP00000000614	1174 (aa)	-	-
ENSXCOT00000000610	-	1272	-	ENSXCOP00000000601	423 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000000506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000000506's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000000506	bms1	96	75.366	ENSG00000165733	BMS1	85	67.360	Homo_sapiens
ENSXCOG00000000506	bms1	69	90.000	ENSAPOG00000016107	-	79	90.000	Acanthochromis_polyacanthus
ENSXCOG00000000506	bms1	87	77.008	ENSAPOG00000002296	bms1	99	76.809	Acanthochromis_polyacanthus
ENSXCOG00000000506	bms1	83	91.785	ENSAPOG00000020157	-	99	91.576	Acanthochromis_polyacanthus
ENSXCOG00000000506	bms1	96	75.485	ENSAMEG00000016834	BMS1	86	66.528	Ailuropoda_melanoleuca
ENSXCOG00000000506	bms1	93	89.313	ENSACIG00000002588	bms1	99	76.942	Amphilophus_citrinellus
ENSXCOG00000000506	bms1	96	90.594	ENSAOCG00000018088	bms1	99	79.866	Amphiprion_ocellaris
ENSXCOG00000000506	bms1	94	90.909	ENSAPEG00000014673	bms1	99	78.600	Amphiprion_percula
ENSXCOG00000000506	bms1	96	90.594	ENSATEG00000023465	bms1	99	76.456	Anabas_testudineus
ENSXCOG00000000506	bms1	96	76.773	ENSAPLG00000003759	BMS1	85	69.381	Anas_platyrhynchos
ENSXCOG00000000506	bms1	60	80.934	ENSACAG00000000125	-	87	85.590	Anolis_carolinensis
ENSXCOG00000000506	bms1	96	75.550	ENSACAG00000004537	-	85	67.690	Anolis_carolinensis
ENSXCOG00000000506	bms1	95	75.616	ENSANAG00000023432	BMS1	81	72.158	Aotus_nancymaae
ENSXCOG00000000506	bms1	95	87.654	ENSACLG00000001294	bms1	99	76.096	Astatotilapia_calliptera
ENSXCOG00000000506	bms1	96	81.907	ENSAMXG00000011236	bms1	89	74.089	Astyanax_mexicanus
ENSXCOG00000000506	bms1	95	76.601	ENSBTAG00000012878	BMS1	85	68.672	Bos_taurus
ENSXCOG00000000506	bms1	94	54.271	WBGene00022021	Y61A9LA.10	91	56.868	Caenorhabditis_elegans
ENSXCOG00000000506	bms1	95	75.123	ENSCJAG00000021705	BMS1	85	67.083	Callithrix_jacchus
ENSXCOG00000000506	bms1	96	75.550	ENSCAFG00000007114	BMS1	85	67.432	Canis_familiaris
ENSXCOG00000000506	bms1	96	75.550	ENSCAFG00020025282	BMS1	85	67.432	Canis_lupus_dingo
ENSXCOG00000000506	bms1	95	77.094	ENSCHIG00000023251	BMS1	85	68.660	Capra_hircus
ENSXCOG00000000506	bms1	95	74.693	ENSCAPG00000008652	BMS1	85	66.387	Cavia_aperea
ENSXCOG00000000506	bms1	96	75.610	ENSCPOG00000000502	BMS1	85	67.641	Cavia_porcellus
ENSXCOG00000000506	bms1	96	56.796	ENSCCAG00000024969	-	80	56.634	Cebus_capucinus
ENSXCOG00000000506	bms1	96	74.572	ENSCATG00000030625	-	85	67.579	Cercocebus_atys
ENSXCOG00000000506	bms1	96	52.798	ENSCATG00000008695	-	67	55.830	Cercocebus_atys
ENSXCOG00000000506	bms1	95	76.658	ENSCLAG00000002446	BMS1	85	68.344	Chinchilla_lanigera
ENSXCOG00000000506	bms1	94	76.309	ENSCSAG00000011118	BMS1	85	68.000	Chlorocebus_sabaeus
ENSXCOG00000000506	bms1	96	73.902	ENSCHOG00000011055	BMS1	83	69.388	Choloepus_hoffmanni
ENSXCOG00000000506	bms1	91	78.261	ENSCPBG00000025581	BMS1	84	67.850	Chrysemys_picta_bellii
ENSXCOG00000000506	bms1	93	62.720	ENSCING00000003181	-	94	64.021	Ciona_intestinalis
ENSXCOG00000000506	bms1	98	54.567	ENSCSAVG00000004113	-	88	54.023	Ciona_savignyi
ENSXCOG00000000506	bms1	96	74.817	ENSCANG00000011609	BMS1	85	66.944	Colobus_angolensis_palliatus
ENSXCOG00000000506	bms1	93	76.263	ENSCGRG00001019461	Bms1	86	66.805	Cricetulus_griseus_chok1gshd
ENSXCOG00000000506	bms1	93	76.263	ENSCGRG00000009016	Bms1	86	66.805	Cricetulus_griseus_crigri
ENSXCOG00000000506	bms1	93	88.010	ENSCSEG00000002469	bms1	99	75.102	Cynoglossus_semilaevis
ENSXCOG00000000506	bms1	94	92.947	ENSCVAG00000008371	bms1	99	84.043	Cyprinodon_variegatus
ENSXCOG00000000506	bms1	96	84.069	ENSDARG00000054154	bms1	99	69.130	Danio_rerio
ENSXCOG00000000506	bms1	96	75.550	ENSDNOG00000015761	BMS1	81	71.005	Dasypus_novemcinctus
ENSXCOG00000000506	bms1	95	75.676	ENSDORG00000002982	Bms1	85	67.925	Dipodomys_ordii
ENSXCOG00000000506	bms1	95	73.645	ENSETEG00000009554	BMS1	76	66.964	Echinops_telfairi
ENSXCOG00000000506	bms1	56	50.209	ENSEBUG00000009838	-	99	50.847	Eptatretus_burgeri
ENSXCOG00000000506	bms1	95	76.413	ENSEASG00005006894	BMS1	87	66.829	Equus_asinus_asinus
ENSXCOG00000000506	bms1	95	76.108	ENSECAG00000001358	BMS1	81	72.120	Equus_caballus
ENSXCOG00000000506	bms1	94	86.398	ENSELUG00000001756	bms1	99	71.888	Esox_lucius
ENSXCOG00000000506	bms1	96	75.550	ENSFCAG00000011220	BMS1	85	66.736	Felis_catus
ENSXCOG00000000506	bms1	96	76.284	ENSFALG00000006882	BMS1	84	68.740	Ficedula_albicollis
ENSXCOG00000000506	bms1	95	75.369	ENSFDAG00000001422	BMS1	85	67.086	Fukomys_damarensis
ENSXCOG00000000506	bms1	94	92.443	ENSFHEG00000003367	bms1	99	84.036	Fundulus_heteroclitus
ENSXCOG00000000506	bms1	92	82.005	ENSGMOG00000000718	bms1	97	68.777	Gadus_morhua
ENSXCOG00000000506	bms1	96	76.716	ENSGALG00000002624	BMS1	85	68.750	Gallus_gallus
ENSXCOG00000000506	bms1	96	97.549	ENSGAFG00000009067	bms1	96	86.451	Gambusia_affinis
ENSXCOG00000000506	bms1	96	85.749	ENSGACG00000015334	bms1	89	81.260	Gasterosteus_aculeatus
ENSXCOG00000000506	bms1	91	77.749	ENSGAGG00000003467	BMS1	88	67.568	Gopherus_agassizii
ENSXCOG00000000506	bms1	95	87.010	ENSHBUG00000022628	bms1	99	76.003	Haplochromis_burtoni
ENSXCOG00000000506	bms1	96	74.878	ENSHGLG00000000477	BMS1	87	66.139	Heterocephalus_glaber_female
ENSXCOG00000000506	bms1	96	74.878	ENSHGLG00100002176	BMS1	87	66.139	Heterocephalus_glaber_male
ENSXCOG00000000506	bms1	96	89.163	ENSHCOG00000017604	bms1	99	76.331	Hippocampus_comes
ENSXCOG00000000506	bms1	99	81.410	ENSIPUG00000017855	bms1	94	77.350	Ictalurus_punctatus
ENSXCOG00000000506	bms1	96	76.471	ENSSTOG00000015063	BMS1	86	68.454	Ictidomys_tridecemlineatus
ENSXCOG00000000506	bms1	95	75.862	ENSJJAG00000017328	Bms1	86	67.925	Jaculus_jaculus
ENSXCOG00000000506	bms1	96	88.971	ENSKMAG00000021982	bms1	97	75.160	Kryptolebias_marmoratus
ENSXCOG00000000506	bms1	96	84.521	ENSLBEG00000028208	bms1	99	74.313	Labrus_bergylta
ENSXCOG00000000506	bms1	95	75.802	ENSLACG00000001600	BMS1	87	68.000	Latimeria_chalumnae
ENSXCOG00000000506	bms1	90	82.940	ENSLOCG00000012914	bms1	97	70.667	Lepisosteus_oculatus
ENSXCOG00000000506	bms1	94	75.561	ENSLAFG00000006250	BMS1	85	65.747	Loxodonta_africana
ENSXCOG00000000506	bms1	96	75.122	ENSMFAG00000037771	BMS1	93	67.789	Macaca_fascicularis
ENSXCOG00000000506	bms1	95	60.741	ENSMMUG00000007426	-	82	61.723	Macaca_mulatta
ENSXCOG00000000506	bms1	94	59.950	ENSMLEG00000029084	-	77	54.565	Mandrillus_leucophaeus
ENSXCOG00000000506	bms1	96	87.438	ENSMAMG00000020855	bms1	99	74.430	Mastacembelus_armatus
ENSXCOG00000000506	bms1	95	87.407	ENSMZEG00005005663	bms1	99	76.096	Maylandia_zebra
ENSXCOG00000000506	bms1	85	77.159	ENSMGAG00000001170	BMS1	86	68.710	Meleagris_gallopavo
ENSXCOG00000000506	bms1	93	75.949	ENSMAUG00000002195	Bms1	86	67.641	Mesocricetus_auratus
ENSXCOG00000000506	bms1	96	75.061	ENSMICG00000009977	BMS1	82	70.776	Microcebus_murinus
ENSXCOG00000000506	bms1	93	75.879	ENSMOCG00000002038	Bms1	87	65.916	Microtus_ochrogaster
ENSXCOG00000000506	bms1	93	90.355	ENSMMOG00000000977	bms1	99	78.286	Mola_mola
ENSXCOG00000000506	bms1	96	76.528	ENSMODG00000001177	BMS1	81	71.854	Monodelphis_domestica
ENSXCOG00000000506	bms1	96	90.172	ENSMALG00000009680	bms1	99	76.729	Monopterus_albus
ENSXCOG00000000506	bms1	93	75.443	MGP_CAROLIEiJ_G0028785	-	72	77.568	Mus_caroli
ENSXCOG00000000506	bms1	93	75.696	ENSMUSG00000030138	Bms1	86	66.253	Mus_musculus
ENSXCOG00000000506	bms1	93	75.949	MGP_PahariEiJ_G0022539	Bms1	86	66.944	Mus_pahari
ENSXCOG00000000506	bms1	93	75.443	MGP_SPRETEiJ_G0029816	Bms1	86	66.253	Mus_spretus
ENSXCOG00000000506	bms1	96	75.550	ENSMPUG00000017276	BMS1	86	66.989	Mustela_putorius_furo
ENSXCOG00000000506	bms1	96	74.696	ENSMLUG00000003260	BMS1	86	66.183	Myotis_lucifugus
ENSXCOG00000000506	bms1	99	57.084	ENSNGAG00000015258	Bms1	97	56.514	Nannospalax_galili
ENSXCOG00000000506	bms1	94	89.141	ENSNBRG00000023627	bms1	98	86.728	Neolamprologus_brichardi
ENSXCOG00000000506	bms1	96	75.061	ENSNLEG00000015791	BMS1	85	67.505	Nomascus_leucogenys
ENSXCOG00000000506	bms1	95	77.094	ENSOPRG00000005195	BMS1	77	78.667	Ochotona_princeps
ENSXCOG00000000506	bms1	96	76.585	ENSODEG00000005554	BMS1	85	67.284	Octodon_degus
ENSXCOG00000000506	bms1	98	87.351	ENSONIG00000007227	bms1	99	75.990	Oreochromis_niloticus
ENSXCOG00000000506	bms1	95	76.167	ENSOANG00000000662	-	79	75.862	Ornithorhynchus_anatinus
ENSXCOG00000000506	bms1	95	76.601	ENSOCUG00000005354	BMS1	85	68.922	Oryctolagus_cuniculus
ENSXCOG00000000506	bms1	96	89.189	ENSORLG00000014655	bms1	99	77.685	Oryzias_latipes
ENSXCOG00000000506	bms1	99	86.364	ENSORLG00020016246	bms1	99	78.469	Oryzias_latipes_hni
ENSXCOG00000000506	bms1	99	87.560	ENSORLG00015014183	bms1	99	79.040	Oryzias_latipes_hsok
ENSXCOG00000000506	bms1	95	89.552	ENSOMEG00000015042	bms1	99	77.963	Oryzias_melastigma
ENSXCOG00000000506	bms1	96	75.182	ENSOGAG00000006511	BMS1	85	66.942	Otolemur_garnettii
ENSXCOG00000000506	bms1	95	76.341	ENSOARG00000003900	BMS1	85	68.098	Ovis_aries
ENSXCOG00000000506	bms1	95	75.676	ENSPPAG00000027837	BMS1	85	67.152	Pan_paniscus
ENSXCOG00000000506	bms1	96	75.550	ENSPPRG00000001311	BMS1	85	66.504	Panthera_pardus
ENSXCOG00000000506	bms1	95	76.108	ENSPTIG00000009652	BMS1	85	66.046	Panthera_tigris_altaica
ENSXCOG00000000506	bms1	96	75.122	ENSPTRG00000002441	BMS1	85	68.211	Pan_troglodytes
ENSXCOG00000000506	bms1	96	80.392	ENSPKIG00000008165	bms1	87	75.000	Paramormyrops_kingsleyae
ENSXCOG00000000506	bms1	93	78.195	ENSPSIG00000006481	BMS1	84	69.068	Pelodiscus_sinensis
ENSXCOG00000000506	bms1	96	87.871	ENSPMGG00000012075	bms1	97	87.657	Periophthalmus_magnuspinnatus
ENSXCOG00000000506	bms1	93	75.377	ENSPEMG00000022467	Bms1	85	66.878	Peromyscus_maniculatus_bairdii
ENSXCOG00000000506	bms1	94	76.808	ENSPCIG00000001339	BMS1	88	66.236	Phascolarctos_cinereus
ENSXCOG00000000506	bms1	96	97.537	ENSPFOG00000015180	bms1	100	91.061	Poecilia_formosa
ENSXCOG00000000506	bms1	96	97.537	ENSPLAG00000007150	bms1	94	93.818	Poecilia_latipinna
ENSXCOG00000000506	bms1	96	97.783	ENSPMEG00000023176	bms1	95	92.546	Poecilia_mexicana
ENSXCOG00000000506	bms1	97	97.066	ENSPREG00000002695	bms1	99	92.054	Poecilia_reticulata
ENSXCOG00000000506	bms1	96	74.817	ENSPPYG00000002836	-	75	67.573	Pongo_abelii
ENSXCOG00000000506	bms1	94	76.119	ENSPCAG00000014528	BMS1	72	68.478	Procavia_capensis
ENSXCOG00000000506	bms1	81	78.426	ENSPCOG00000023834	-	86	66.887	Propithecus_coquereli
ENSXCOG00000000506	bms1	96	73.839	ENSPVAG00000000725	BMS1	81	74.074	Pteropus_vampyrus
ENSXCOG00000000506	bms1	95	88.089	ENSPNYG00000018866	bms1	99	77.044	Pundamilia_nyererei
ENSXCOG00000000506	bms1	96	81.863	ENSPNAG00000000676	bms1	93	77.010	Pygocentrus_nattereri
ENSXCOG00000000506	bms1	93	75.879	ENSRNOG00000006576	Bms1	83	67.008	Rattus_norvegicus
ENSXCOG00000000506	bms1	96	71.220	ENSRROG00000040101	BMS1	85	65.806	Rhinopithecus_roxellana
ENSXCOG00000000506	bms1	75	53.868	YPL217C	-	75	53.295	Saccharomyces_cerevisiae
ENSXCOG00000000506	bms1	95	75.369	ENSSBOG00000035778	BMS1	85	66.116	Saimiri_boliviensis_boliviensis
ENSXCOG00000000506	bms1	94	77.307	ENSSHAG00000005062	BMS1	80	71.759	Sarcophilus_harrisii
ENSXCOG00000000506	bms1	95	82.963	ENSSFOG00015022313	bms1	97	71.287	Scleropages_formosus
ENSXCOG00000000506	bms1	97	88.756	ENSSMAG00000019966	bms1	99	75.040	Scophthalmus_maximus
ENSXCOG00000000506	bms1	96	90.686	ENSSDUG00000016875	bms1	99	77.625	Seriola_dumerili
ENSXCOG00000000506	bms1	96	90.196	ENSSLDG00000015199	bms1	99	76.849	Seriola_lalandi_dorsalis
ENSXCOG00000000506	bms1	51	75.000	ENSSARG00000014407	BMS1	67	75.000	Sorex_araneus
ENSXCOG00000000506	bms1	95	77.833	ENSSPUG00000014454	BMS1	84	69.206	Sphenodon_punctatus
ENSXCOG00000000506	bms1	96	76.341	ENSSSCG00000010198	BMS1	85	67.708	Sus_scrofa
ENSXCOG00000000506	bms1	94	77.171	ENSTGUG00000006302	-	84	69.144	Taeniopygia_guttata
ENSXCOG00000000506	bms1	94	86.146	ENSTRUG00000008028	bms1	98	71.309	Takifugu_rubripes
ENSXCOG00000000506	bms1	97	83.659	ENSTNIG00000006216	bms1	88	74.549	Tetraodon_nigroviridis
ENSXCOG00000000506	bms1	83	65.043	ENSTBEG00000001673	-	62	67.698	Tupaia_belangeri
ENSXCOG00000000506	bms1	94	77.556	ENSTTRG00000007983	BMS1	77	79.459	Tursiops_truncatus
ENSXCOG00000000506	bms1	96	75.854	ENSUAMG00000023996	BMS1	85	66.612	Ursus_americanus
ENSXCOG00000000506	bms1	96	75.550	ENSUMAG00000016523	BMS1	86	66.527	Ursus_maritimus
ENSXCOG00000000506	bms1	76	71.181	ENSVPAG00000007477	BMS1	86	61.944	Vicugna_pacos
ENSXCOG00000000506	bms1	96	75.550	ENSVVUG00000021305	BMS1	87	67.432	Vulpes_vulpes
ENSXCOG00000000506	bms1	94	74.564	ENSXETG00000008158	bms1	89	69.293	Xenopus_tropicalis
ENSXCOG00000000506	bms1	96	99.755	ENSXMAG00000014236	bms1	100	95.326	Xiphophorus_maculatus