EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000000780 (Gene tree)
Gene ID: -
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 7596 bases
Position: chrKQ557220.1:13289446-13297041
Accession: ZDB-GENE-030131-9612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000000935	RRM_5	PF13893.6	2e-06	1	1
ENSXCOP00000000935	RRM_1	PF00076.22	1.3e-38	1	3
ENSXCOP00000000935	RRM_1	PF00076.22	1.3e-38	2	3
ENSXCOP00000000935	RRM_1	PF00076.22	1.3e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000000947	-	1557	-	ENSXCOP00000000935	518 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000000780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000000780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000000780	rbm47	58	70.627	ENSXCOG00000003302	a1cf	56	67.059
ENSXCOG00000000780	rbm47	60	52.396	ENSXCOG00000004052	syncripl	56	52.188

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000000780	rbm47	100	80.481	ENSG00000163694	RBM47	100	85.253	Homo_sapiens
ENSXCOG00000000780	rbm47	100	93.784	ENSAPOG00000011062	rbm47	100	93.784	Acanthochromis_polyacanthus
ENSXCOG00000000780	rbm47	100	80.267	ENSAMEG00000009672	RBM47	88	82.933	Ailuropoda_melanoleuca
ENSXCOG00000000780	rbm47	100	92.703	ENSACIG00000011531	rbm47	100	92.703	Amphilophus_citrinellus
ENSXCOG00000000780	rbm47	100	93.784	ENSAOCG00000022245	rbm47	100	93.784	Amphiprion_ocellaris
ENSXCOG00000000780	rbm47	100	93.784	ENSAPEG00000018304	rbm47	100	93.784	Amphiprion_percula
ENSXCOG00000000780	rbm47	100	89.406	ENSATEG00000018400	rbm47	100	89.406	Anabas_testudineus
ENSXCOG00000000780	rbm47	100	84.127	ENSAPLG00000013974	RBM47	88	84.127	Anas_platyrhynchos
ENSXCOG00000000780	rbm47	100	80.902	ENSACAG00000011833	RBM47	88	80.902	Anolis_carolinensis
ENSXCOG00000000780	rbm47	100	81.915	ENSANAG00000029440	RBM47	95	83.245	Aotus_nancymaae
ENSXCOG00000000780	rbm47	100	89.351	ENSACLG00000016902	rbm47	100	87.732	Astatotilapia_calliptera
ENSXCOG00000000780	rbm47	97	89.859	ENSAMXG00000021794	rbm47	89	84.238	Astyanax_mexicanus
ENSXCOG00000000780	rbm47	100	81.915	ENSBTAG00000002356	RBM47	88	83.245	Bos_taurus
ENSXCOG00000000780	rbm47	97	85.070	ENSCJAG00000019385	RBM47	95	83.245	Callithrix_jacchus
ENSXCOG00000000780	rbm47	97	84.136	ENSCAFG00000015898	RBM47	88	81.432	Canis_familiaris
ENSXCOG00000000780	rbm47	81	83.853	ENSCAFG00020010558	RBM47	94	77.528	Canis_lupus_dingo
ENSXCOG00000000780	rbm47	100	81.649	ENSCHIG00000026214	RBM47	88	82.979	Capra_hircus
ENSXCOG00000000780	rbm47	71	88.128	ENSTSYG00000033612	RBM47	74	88.128	Carlito_syrichta
ENSXCOG00000000780	rbm47	100	74.332	ENSCAPG00000008426	RBM47	100	70.476	Cavia_aperea
ENSXCOG00000000780	rbm47	100	81.333	ENSCPOG00000014100	RBM47	100	76.426	Cavia_porcellus
ENSXCOG00000000780	rbm47	100	83.245	ENSCCAG00000030129	-	95	83.245	Cebus_capucinus
ENSXCOG00000000780	rbm47	99	51.607	ENSCCAG00000024397	-	99	51.607	Cebus_capucinus
ENSXCOG00000000780	rbm47	100	80.481	ENSCATG00000042064	RBM47	95	83.245	Cercocebus_atys
ENSXCOG00000000780	rbm47	100	81.067	ENSCLAG00000001684	RBM47	100	80.380	Chinchilla_lanigera
ENSXCOG00000000780	rbm47	100	80.481	ENSCSAG00000017060	RBM47	88	83.245	Chlorocebus_sabaeus
ENSXCOG00000000780	rbm47	75	87.869	ENSCHOG00000011731	RBM47	70	84.911	Choloepus_hoffmanni
ENSXCOG00000000780	rbm47	100	85.638	ENSCPBG00000013831	RBM47	88	85.638	Chrysemys_picta_bellii
ENSXCOG00000000780	rbm47	100	81.649	ENSCANG00000019997	RBM47	95	83.245	Colobus_angolensis_palliatus
ENSXCOG00000000780	rbm47	100	81.481	ENSCGRG00001000623	-	100	74.953	Cricetulus_griseus_chok1gshd
ENSXCOG00000000780	rbm47	100	70.588	ENSCGRG00001020102	-	100	71.537	Cricetulus_griseus_chok1gshd
ENSXCOG00000000780	rbm47	100	80.157	ENSCGRG00000007762	-	100	82.278	Cricetulus_griseus_crigri
ENSXCOG00000000780	rbm47	99	71.236	ENSCGRG00000014760	-	98	72.201	Cricetulus_griseus_crigri
ENSXCOG00000000780	rbm47	100	90.860	ENSCSEG00000004545	rbm47	88	90.860	Cynoglossus_semilaevis
ENSXCOG00000000780	rbm47	100	96.486	ENSCVAG00000020144	rbm47	100	91.280	Cyprinodon_variegatus
ENSXCOG00000000780	rbm47	100	85.013	ENSDARG00000061985	rbm47	89	85.013	Danio_rerio
ENSXCOG00000000780	rbm47	100	81.915	ENSDNOG00000046854	RBM47	88	83.511	Dasypus_novemcinctus
ENSXCOG00000000780	rbm47	100	81.003	ENSDORG00000010144	Rbm47	88	81.365	Dipodomys_ordii
ENSXCOG00000000780	rbm47	97	82.633	ENSETEG00000009194	RBM47	88	82.850	Echinops_telfairi
ENSXCOG00000000780	rbm47	100	55.143	ENSEBUG00000011912	rbm47	69	71.314	Eptatretus_burgeri
ENSXCOG00000000780	rbm47	100	81.117	ENSEASG00005008443	RBM47	88	82.713	Equus_asinus_asinus
ENSXCOG00000000780	rbm47	100	81.117	ENSECAG00000004400	RBM47	88	82.713	Equus_caballus
ENSXCOG00000000780	rbm47	69	88.038	ENSEEUG00000001194	RBM47	62	84.889	Erinaceus_europaeus
ENSXCOG00000000780	rbm47	100	86.041	ENSELUG00000006148	rbm47	100	80.586	Esox_lucius
ENSXCOG00000000780	rbm47	100	80.267	ENSFCAG00000012399	RBM47	88	82.933	Felis_catus
ENSXCOG00000000780	rbm47	100	83.777	ENSFALG00000002861	RBM47	88	83.777	Ficedula_albicollis
ENSXCOG00000000780	rbm47	100	80.267	ENSFDAG00000016326	RBM47	100	74.857	Fukomys_damarensis
ENSXCOG00000000780	rbm47	100	97.554	ENSFHEG00000007938	rbm47	88	97.554	Fundulus_heteroclitus
ENSXCOG00000000780	rbm47	100	84.772	ENSGMOG00000014802	rbm47	100	84.343	Gadus_morhua
ENSXCOG00000000780	rbm47	71	84.309	ENSGALG00000014267	RBM47	99	84.309	Gallus_gallus
ENSXCOG00000000780	rbm47	71	99.457	ENSGAFG00000020571	rbm47	98	99.457	Gambusia_affinis
ENSXCOG00000000780	rbm47	100	86.375	ENSGACG00000016223	rbm47	100	85.158	Gasterosteus_aculeatus
ENSXCOG00000000780	rbm47	100	85.372	ENSGAGG00000020051	RBM47	88	85.372	Gopherus_agassizii
ENSXCOG00000000780	rbm47	100	80.481	ENSGGOG00000001367	RBM47	95	83.245	Gorilla_gorilla
ENSXCOG00000000780	rbm47	100	89.351	ENSHBUG00000003520	rbm47	100	87.407	Haplochromis_burtoni
ENSXCOG00000000780	rbm47	100	60.381	ENSHGLG00000016914	RBM47	100	79.747	Heterocephalus_glaber_female
ENSXCOG00000000780	rbm47	100	76.533	ENSHGLG00100003071	-	89	76.533	Heterocephalus_glaber_male
ENSXCOG00000000780	rbm47	100	80.423	ENSHGLG00100014028	-	100	79.747	Heterocephalus_glaber_male
ENSXCOG00000000780	rbm47	99	91.200	ENSHCOG00000002074	rbm47	99	86.778	Hippocampus_comes
ENSXCOG00000000780	rbm47	100	84.715	ENSIPUG00000004743	rbm47	100	76.732	Ictalurus_punctatus
ENSXCOG00000000780	rbm47	100	80.533	ENSSTOG00000004727	RBM47	94	83.444	Ictidomys_tridecemlineatus
ENSXCOG00000000780	rbm47	97	85.593	ENSJJAG00000013823	Rbm47	88	81.698	Jaculus_jaculus
ENSXCOG00000000780	rbm47	100	92.021	ENSKMAG00000000084	rbm47	100	87.407	Kryptolebias_marmoratus
ENSXCOG00000000780	rbm47	100	91.421	ENSLBEG00000008436	rbm47	100	85.375	Labrus_bergylta
ENSXCOG00000000780	rbm47	100	85.411	ENSLACG00000007196	RBM47	89	85.411	Latimeria_chalumnae
ENSXCOG00000000780	rbm47	100	86.059	ENSLOCG00000012966	rbm47	84	87.131	Lepisosteus_oculatus
ENSXCOG00000000780	rbm47	100	82.086	ENSLAFG00000011998	RBM47	88	84.492	Loxodonta_africana
ENSXCOG00000000780	rbm47	100	80.481	ENSMFAG00000037967	RBM47	95	83.245	Macaca_fascicularis
ENSXCOG00000000780	rbm47	100	80.481	ENSMMUG00000012036	RBM47	100	83.420	Macaca_mulatta
ENSXCOG00000000780	rbm47	100	80.481	ENSMNEG00000040774	RBM47	95	83.245	Macaca_nemestrina
ENSXCOG00000000780	rbm47	100	82.857	ENSMLEG00000041432	RBM47	100	85.079	Mandrillus_leucophaeus
ENSXCOG00000000780	rbm47	100	89.637	ENSMAMG00000019143	rbm47	100	87.500	Mastacembelus_armatus
ENSXCOG00000000780	rbm47	100	89.351	ENSMZEG00005023659	rbm47	100	86.447	Maylandia_zebra
ENSXCOG00000000780	rbm47	100	84.840	ENSMGAG00000012226	RBM47	88	84.840	Meleagris_gallopavo
ENSXCOG00000000780	rbm47	100	80.739	ENSMAUG00000006493	Rbm47	100	82.278	Mesocricetus_auratus
ENSXCOG00000000780	rbm47	97	82.051	ENSMICG00000026417	RBM47	100	75.191	Microcebus_murinus
ENSXCOG00000000780	rbm47	100	80.688	ENSMOCG00000021170	Rbm47	100	81.646	Microtus_ochrogaster
ENSXCOG00000000780	rbm47	100	88.860	ENSMMOG00000007260	rbm47	100	88.860	Mola_mola
ENSXCOG00000000780	rbm47	99	81.818	ENSMODG00000020561	-	86	82.044	Monodelphis_domestica
ENSXCOG00000000780	rbm47	100	84.000	ENSMODG00000007003	RBM47	88	84.000	Monodelphis_domestica
ENSXCOG00000000780	rbm47	59	78.387	ENSMODG00000015426	-	97	78.387	Monodelphis_domestica
ENSXCOG00000000780	rbm47	100	92.954	ENSMALG00000005167	rbm47	100	86.220	Monopterus_albus
ENSXCOG00000000780	rbm47	100	80.688	MGP_CAROLIEiJ_G0027258	Rbm47	100	81.646	Mus_caroli
ENSXCOG00000000780	rbm47	100	80.688	ENSMUSG00000070780	Rbm47	100	81.646	Mus_musculus
ENSXCOG00000000780	rbm47	100	80.688	MGP_PahariEiJ_G0017040	Rbm47	100	81.646	Mus_pahari
ENSXCOG00000000780	rbm47	100	80.688	MGP_SPRETEiJ_G0028253	Rbm47	100	81.646	Mus_spretus
ENSXCOG00000000780	rbm47	100	81.333	ENSMPUG00000006177	RBM47	83	82.933	Mustela_putorius_furo
ENSXCOG00000000780	rbm47	99	84.054	ENSMLUG00000000889	RBM47	87	84.054	Myotis_lucifugus
ENSXCOG00000000780	rbm47	100	82.979	ENSNGAG00000003325	Rbm47	88	82.979	Nannospalax_galili
ENSXCOG00000000780	rbm47	100	89.870	ENSNBRG00000015092	rbm47	89	89.870	Neolamprologus_brichardi
ENSXCOG00000000780	rbm47	100	80.481	ENSNLEG00000017151	RBM47	95	83.245	Nomascus_leucogenys
ENSXCOG00000000780	rbm47	69	85.556	ENSMEUG00000009516	-	84	85.556	Notamacropus_eugenii
ENSXCOG00000000780	rbm47	85	83.817	ENSOPRG00000016507	-	75	83.817	Ochotona_princeps
ENSXCOG00000000780	rbm47	100	79.467	ENSODEG00000004873	RBM47	88	81.867	Octodon_degus
ENSXCOG00000000780	rbm47	100	88.918	ENSONIG00000009061	rbm47	88	88.918	Oreochromis_niloticus
ENSXCOG00000000780	rbm47	100	82.895	ENSOANG00000008978	RBM47	88	82.895	Ornithorhynchus_anatinus
ENSXCOG00000000780	rbm47	100	80.851	ENSOCUG00000012034	RBM47	88	82.181	Oryctolagus_cuniculus
ENSXCOG00000000780	rbm47	100	91.935	ENSORLG00000005847	rbm47	100	86.034	Oryzias_latipes
ENSXCOG00000000780	rbm47	100	91.935	ENSORLG00020005154	rbm47	100	86.220	Oryzias_latipes_hni
ENSXCOG00000000780	rbm47	100	91.935	ENSORLG00015000066	rbm47	100	86.592	Oryzias_latipes_hsok
ENSXCOG00000000780	rbm47	100	91.644	ENSOMEG00000010730	rbm47	100	91.644	Oryzias_melastigma
ENSXCOG00000000780	rbm47	100	75.733	ENSOGAG00000025193	-	88	77.067	Otolemur_garnettii
ENSXCOG00000000780	rbm47	100	81.600	ENSOGAG00000029367	-	88	82.933	Otolemur_garnettii
ENSXCOG00000000780	rbm47	100	70.213	ENSOARG00000012711	RBM47	87	71.543	Ovis_aries
ENSXCOG00000000780	rbm47	100	80.481	ENSPPAG00000029763	RBM47	95	83.245	Pan_paniscus
ENSXCOG00000000780	rbm47	100	72.952	ENSPPRG00000012873	RBM47	100	75.048	Panthera_pardus
ENSXCOG00000000780	rbm47	84	85.664	ENSPTIG00000017046	RBM47	86	85.664	Panthera_tigris_altaica
ENSXCOG00000000780	rbm47	100	80.481	ENSPTRG00000016006	RBM47	95	83.245	Pan_troglodytes
ENSXCOG00000000780	rbm47	100	80.481	ENSPANG00000005980	RBM47	95	83.245	Papio_anubis
ENSXCOG00000000780	rbm47	99	78.695	ENSPKIG00000013431	RBM47	100	75.271	Paramormyrops_kingsleyae
ENSXCOG00000000780	rbm47	97	81.980	ENSPKIG00000005037	rbm47	100	84.817	Paramormyrops_kingsleyae
ENSXCOG00000000780	rbm47	87	85.638	ENSPSIG00000017516	RBM47	85	85.638	Pelodiscus_sinensis
ENSXCOG00000000780	rbm47	100	91.622	ENSPMGG00000018540	rbm47	88	91.622	Periophthalmus_magnuspinnatus
ENSXCOG00000000780	rbm47	100	80.688	ENSPEMG00000011088	Rbm47	100	75.283	Peromyscus_maniculatus_bairdii
ENSXCOG00000000780	rbm47	100	93.316	ENSPFOG00000007997	rbm47	100	93.316	Poecilia_formosa
ENSXCOG00000000780	rbm47	100	96.731	ENSPLAG00000002072	rbm47	100	96.731	Poecilia_latipinna
ENSXCOG00000000780	rbm47	100	98.913	ENSPMEG00000017492	rbm47	100	93.316	Poecilia_mexicana
ENSXCOG00000000780	rbm47	100	97.115	ENSPREG00000008456	rbm47	100	97.115	Poecilia_reticulata
ENSXCOG00000000780	rbm47	97	73.876	ENSPPYG00000014688	RBM47	87	75.766	Pongo_abelii
ENSXCOG00000000780	rbm47	88	79.790	ENSPCAG00000011879	RBM47	78	82.677	Procavia_capensis
ENSXCOG00000000780	rbm47	100	80.214	ENSPCOG00000023451	RBM47	100	75.665	Propithecus_coquereli
ENSXCOG00000000780	rbm47	100	80.106	ENSPVAG00000003812	RBM47	88	82.228	Pteropus_vampyrus
ENSXCOG00000000780	rbm47	100	89.351	ENSPNYG00000022868	rbm47	89	89.351	Pundamilia_nyererei
ENSXCOG00000000780	rbm47	100	85.013	ENSPNAG00000007940	rbm47	89	85.013	Pygocentrus_nattereri
ENSXCOG00000000780	rbm47	100	80.952	ENSRNOG00000002408	Rbm47	89	82.275	Rattus_norvegicus
ENSXCOG00000000780	rbm47	100	81.649	ENSRBIG00000039601	RBM47	95	83.245	Rhinopithecus_bieti
ENSXCOG00000000780	rbm47	100	81.649	ENSRROG00000044696	RBM47	95	83.245	Rhinopithecus_roxellana
ENSXCOG00000000780	rbm47	100	65.331	ENSSBOG00000028475	RBM47	97	82.895	Saimiri_boliviensis_boliviensis
ENSXCOG00000000780	rbm47	100	84.000	ENSSHAG00000017576	RBM47	100	84.000	Sarcophilus_harrisii
ENSXCOG00000000780	rbm47	99	66.093	ENSSFOG00015024101	RBM47	86	82.320	Scleropages_formosus
ENSXCOG00000000780	rbm47	93	83.161	ENSSFOG00015012445	rbm47	100	83.161	Scleropages_formosus
ENSXCOG00000000780	rbm47	100	87.339	ENSSMAG00000009744	rbm47	100	85.289	Scophthalmus_maximus
ENSXCOG00000000780	rbm47	100	92.225	ENSSDUG00000022684	rbm47	88	92.225	Seriola_dumerili
ENSXCOG00000000780	rbm47	100	93.225	ENSSLDG00000003109	rbm47	100	86.740	Seriola_lalandi_dorsalis
ENSXCOG00000000780	rbm47	82	78.534	ENSSARG00000001735	RBM47	73	81.250	Sorex_araneus
ENSXCOG00000000780	rbm47	100	84.043	ENSSPUG00000007515	RBM47	100	77.505	Sphenodon_punctatus
ENSXCOG00000000780	rbm47	100	93.784	ENSSPAG00000001257	rbm47	100	93.784	Stegastes_partitus
ENSXCOG00000000780	rbm47	100	81.649	ENSSSCG00000008796	RBM47	89	82.586	Sus_scrofa
ENSXCOG00000000780	rbm47	100	83.777	ENSTGUG00000008705	RBM47	88	83.777	Taeniopygia_guttata
ENSXCOG00000000780	rbm47	100	66.781	ENSTRUG00000014050	rbm47	63	92.935	Takifugu_rubripes
ENSXCOG00000000780	rbm47	100	87.824	ENSTNIG00000006127	rbm47	88	87.824	Tetraodon_nigroviridis
ENSXCOG00000000780	rbm47	87	79.679	ENSTBEG00000001607	RBM47	74	81.793	Tupaia_belangeri
ENSXCOG00000000780	rbm47	100	81.649	ENSTTRG00000002839	RBM47	88	83.245	Tursiops_truncatus
ENSXCOG00000000780	rbm47	100	80.267	ENSUAMG00000021346	RBM47	88	82.933	Ursus_americanus
ENSXCOG00000000780	rbm47	97	84.703	ENSVVUG00000014774	RBM47	88	81.698	Vulpes_vulpes
ENSXCOG00000000780	rbm47	100	84.656	ENSXETG00000012802	rbm47	92	84.656	Xenopus_tropicalis
ENSXCOG00000000780	rbm47	100	99.728	ENSXMAG00000009874	rbm47	100	95.733	Xiphophorus_maculatus