EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000000957 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 6580 bases
Position: chrKQ557211.1:1396371-1402950
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004924	CPSF73-100_C	PF11718.8	1.3e-54	1	1
ENSXCOP00000004642	CPSF73-100_C	PF11718.8	1.7e-54	1	1
ENSXCOP00000004924	Beta-Casp	PF10996.8	5.8e-18	1	1
ENSXCOP00000004642	Beta-Casp	PF10996.8	3e-17	1	1
ENSXCOP00000004642	RMMBL	PF07521.12	1e-21	1	1
ENSXCOP00000004924	RMMBL	PF07521.12	1.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004699	-	1284	-	ENSXCOP00000004642	427 (aa)	-	-
ENSXCOT00000004984	-	1608	-	ENSXCOP00000004924	535 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000000957's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000000957's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000000957	-	87	78.763	ENSXCOG00000019695	cpsf3	53	78.763

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000000957	-	87	79.245	ENSG00000119203	CPSF3	57	79.245	Homo_sapiens
ENSXCOG00000000957	-	87	80.108	ENSAPOG00000022087	cpsf3	54	80.108	Acanthochromis_polyacanthus
ENSXCOG00000000957	-	87	80.054	ENSAMEG00000008493	CPSF3	54	80.054	Ailuropoda_melanoleuca
ENSXCOG00000000957	-	87	91.153	ENSACIG00000023663	CPSF3	59	91.153	Amphilophus_citrinellus
ENSXCOG00000000957	-	87	77.480	ENSACIG00000009846	cpsf3	58	77.480	Amphilophus_citrinellus
ENSXCOG00000000957	-	87	79.839	ENSAOCG00000022056	cpsf3	54	79.839	Amphiprion_ocellaris
ENSXCOG00000000957	-	87	92.473	ENSAOCG00000010077	CPSF3	54	92.473	Amphiprion_ocellaris
ENSXCOG00000000957	-	87	80.108	ENSAPEG00000019526	cpsf3	58	78.495	Amphiprion_percula
ENSXCOG00000000957	-	87	92.473	ENSAPEG00000021167	CPSF3	54	92.473	Amphiprion_percula
ENSXCOG00000000957	-	87	80.541	ENSATEG00000003959	cpsf3	58	78.919	Anabas_testudineus
ENSXCOG00000000957	-	87	78.226	ENSATEG00000014525	CPSF3	52	78.226	Anabas_testudineus
ENSXCOG00000000957	-	87	80.054	ENSAPLG00000006941	CPSF3	54	80.054	Anas_platyrhynchos
ENSXCOG00000000957	-	87	76.267	ENSACAG00000001759	CPSF3	58	76.267	Anolis_carolinensis
ENSXCOG00000000957	-	87	70.350	ENSANAG00000031254	CPSF3	54	70.350	Aotus_nancymaae
ENSXCOG00000000957	-	87	91.689	ENSACLG00000018846	CPSF3	59	91.689	Astatotilapia_calliptera
ENSXCOG00000000957	-	87	80.108	ENSACLG00000014484	cpsf3	58	79.032	Astatotilapia_calliptera
ENSXCOG00000000957	-	87	80.645	ENSAMXG00000004786	cpsf3	58	78.763	Astyanax_mexicanus
ENSXCOG00000000957	-	87	79.784	ENSBTAG00000019735	CPSF3	54	79.784	Bos_taurus
ENSXCOG00000000957	-	87	79.245	ENSCJAG00000006276	CPSF3	55	79.245	Callithrix_jacchus
ENSXCOG00000000957	-	87	80.054	ENSCAFG00000003375	CPSF3	52	80.054	Canis_familiaris
ENSXCOG00000000957	-	72	83.117	ENSCAFG00020026799	CPSF3	50	83.117	Canis_lupus_dingo
ENSXCOG00000000957	-	87	79.784	ENSCHIG00000013973	CPSF3	54	79.784	Capra_hircus
ENSXCOG00000000957	-	87	79.245	ENSTSYG00000002967	CPSF3	54	79.245	Carlito_syrichta
ENSXCOG00000000957	-	87	79.245	ENSCAPG00000013851	CPSF3	56	79.245	Cavia_aperea
ENSXCOG00000000957	-	87	79.245	ENSCPOG00000011299	CPSF3	54	79.245	Cavia_porcellus
ENSXCOG00000000957	-	87	78.976	ENSCCAG00000036730	CPSF3	55	78.976	Cebus_capucinus
ENSXCOG00000000957	-	87	76.011	ENSCATG00000014770	CPSF3	54	76.011	Cercocebus_atys
ENSXCOG00000000957	-	87	79.245	ENSCLAG00000002727	CPSF3	54	79.245	Chinchilla_lanigera
ENSXCOG00000000957	-	74	75.786	ENSCSAG00000007125	CPSF3	50	75.786	Chlorocebus_sabaeus
ENSXCOG00000000957	-	87	44.205	ENSCHOG00000000180	CPSF3	56	44.205	Choloepus_hoffmanni
ENSXCOG00000000957	-	87	80.054	ENSCPBG00000014074	CPSF3	54	80.054	Chrysemys_picta_bellii
ENSXCOG00000000957	-	87	57.600	ENSCING00000007214	-	53	57.600	Ciona_intestinalis
ENSXCOG00000000957	-	87	73.067	ENSCANG00000034435	CPSF3	56	73.067	Colobus_angolensis_palliatus
ENSXCOG00000000957	-	87	79.515	ENSCGRG00001013134	Cpsf3	54	79.515	Cricetulus_griseus_chok1gshd
ENSXCOG00000000957	-	87	79.515	ENSCGRG00000018319	Cpsf3	54	79.515	Cricetulus_griseus_crigri
ENSXCOG00000000957	-	87	86.595	ENSCSEG00000002021	CPSF3	58	86.595	Cynoglossus_semilaevis
ENSXCOG00000000957	-	75	74.608	ENSCVAG00000022039	-	94	74.608	Cyprinodon_variegatus
ENSXCOG00000000957	-	87	94.355	ENSCVAG00000015067	CPSF3	54	94.355	Cyprinodon_variegatus
ENSXCOG00000000957	-	87	81.989	ENSDARG00000027649	cpsf3	54	81.989	Danio_rerio
ENSXCOG00000000957	-	87	78.495	ENSDNOG00000008940	CPSF3	52	78.495	Dasypus_novemcinctus
ENSXCOG00000000957	-	79	80.588	ENSDORG00000014263	Cpsf3	52	80.588	Dipodomys_ordii
ENSXCOG00000000957	-	87	55.228	FBgn0261065	Cpsf73	54	55.228	Drosophila_melanogaster
ENSXCOG00000000957	-	79	81.471	ENSETEG00000003893	CPSF3	52	81.471	Echinops_telfairi
ENSXCOG00000000957	-	87	64.706	ENSEBUG00000009018	cpsf3	55	65.394	Eptatretus_burgeri
ENSXCOG00000000957	-	87	80.054	ENSEASG00005003970	CPSF3	54	80.054	Equus_asinus_asinus
ENSXCOG00000000957	-	87	80.054	ENSECAG00000019911	CPSF3	54	80.054	Equus_caballus
ENSXCOG00000000957	-	87	64.960	ENSEEUG00000015422	CPSF3	54	64.960	Erinaceus_europaeus
ENSXCOG00000000957	-	87	84.636	ENSELUG00000013775	cpsf3	58	83.827	Esox_lucius
ENSXCOG00000000957	-	87	79.784	ENSFCAG00000007852	CPSF3	57	79.784	Felis_catus
ENSXCOG00000000957	-	87	79.784	ENSFALG00000006572	CPSF3	57	79.784	Ficedula_albicollis
ENSXCOG00000000957	-	87	78.167	ENSFDAG00000006317	CPSF3	54	78.167	Fukomys_damarensis
ENSXCOG00000000957	-	75	89.815	ENSFHEG00000012186	CPSF3	88	89.815	Fundulus_heteroclitus
ENSXCOG00000000957	-	87	78.226	ENSFHEG00000014774	cpsf3	54	78.226	Fundulus_heteroclitus
ENSXCOG00000000957	-	87	81.183	ENSGMOG00000003157	cpsf3	54	81.183	Gadus_morhua
ENSXCOG00000000957	-	87	79.245	ENSGALG00000016424	CPSF3	58	79.245	Gallus_gallus
ENSXCOG00000000957	-	87	78.763	ENSGAFG00000019449	cpsf3	58	78.763	Gambusia_affinis
ENSXCOG00000000957	-	87	98.656	ENSGAFG00000008016	CPSF3	54	98.656	Gambusia_affinis
ENSXCOG00000000957	-	87	80.054	ENSGAGG00000025583	CPSF3	74	80.054	Gopherus_agassizii
ENSXCOG00000000957	-	87	79.245	ENSGGOG00000001757	CPSF3	58	79.245	Gorilla_gorilla
ENSXCOG00000000957	-	87	86.828	ENSHBUG00000014332	CPSF3	92	86.828	Haplochromis_burtoni
ENSXCOG00000000957	-	87	79.839	ENSHBUG00000001188	cpsf3	58	79.032	Haplochromis_burtoni
ENSXCOG00000000957	-	87	79.245	ENSHGLG00000000666	CPSF3	54	79.245	Heterocephalus_glaber_female
ENSXCOG00000000957	-	87	79.245	ENSHGLG00100007765	CPSF3	54	79.245	Heterocephalus_glaber_male
ENSXCOG00000000957	-	87	79.730	ENSHCOG00000007251	cpsf3	53	79.730	Hippocampus_comes
ENSXCOG00000000957	-	87	88.919	ENSHCOG00000015957	CPSF3	53	88.919	Hippocampus_comes
ENSXCOG00000000957	-	87	79.570	ENSIPUG00000023488	cpsf3	58	77.151	Ictalurus_punctatus
ENSXCOG00000000957	-	87	79.245	ENSSTOG00000004476	CPSF3	54	79.245	Ictidomys_tridecemlineatus
ENSXCOG00000000957	-	87	78.706	ENSJJAG00000023415	Cpsf3	54	78.706	Jaculus_jaculus
ENSXCOG00000000957	-	87	92.473	ENSKMAG00000007317	CPSF3	54	92.473	Kryptolebias_marmoratus
ENSXCOG00000000957	-	87	77.688	ENSKMAG00000002806	cpsf3	54	77.688	Kryptolebias_marmoratus
ENSXCOG00000000957	-	79	80.531	ENSLBEG00000015018	-	90	80.531	Labrus_bergylta
ENSXCOG00000000957	-	79	93.215	ENSLBEG00000013492	CPSF3	51	93.215	Labrus_bergylta
ENSXCOG00000000957	-	87	67.292	ENSLACG00000008308	CPSF3	54	67.292	Latimeria_chalumnae
ENSXCOG00000000957	-	87	82.667	ENSLOCG00000016823	cpsf3	54	82.667	Lepisosteus_oculatus
ENSXCOG00000000957	-	87	79.515	ENSLAFG00000009467	CPSF3	55	79.515	Loxodonta_africana
ENSXCOG00000000957	-	87	78.976	ENSMFAG00000001339	CPSF3	57	78.976	Macaca_fascicularis
ENSXCOG00000000957	-	87	78.976	ENSMMUG00000018038	CPSF3	57	78.976	Macaca_mulatta
ENSXCOG00000000957	-	86	79.189	ENSMNEG00000039447	CPSF3	60	78.610	Macaca_nemestrina
ENSXCOG00000000957	-	87	79.245	ENSMLEG00000026825	CPSF3	54	79.245	Mandrillus_leucophaeus
ENSXCOG00000000957	-	87	78.495	ENSMAMG00000003076	cpsf3	54	78.495	Mastacembelus_armatus
ENSXCOG00000000957	-	87	89.840	ENSMAMG00000008835	CPSF3	58	89.840	Mastacembelus_armatus
ENSXCOG00000000957	-	87	91.935	ENSMZEG00005006258	CPSF3	59	91.689	Maylandia_zebra
ENSXCOG00000000957	-	87	79.839	ENSMZEG00005014358	cpsf3	58	79.032	Maylandia_zebra
ENSXCOG00000000957	-	87	79.245	ENSMGAG00000013995	CPSF3	56	79.245	Meleagris_gallopavo
ENSXCOG00000000957	-	86	79.675	ENSMAUG00000000166	Cpsf3	98	79.675	Mesocricetus_auratus
ENSXCOG00000000957	-	87	74.324	ENSMICG00000002363	CPSF3	58	74.324	Microcebus_murinus
ENSXCOG00000000957	-	87	73.315	ENSMOCG00000020067	Cpsf3	52	73.315	Microtus_ochrogaster
ENSXCOG00000000957	-	87	71.698	ENSMMOG00000018212	CPSF3	55	72.507	Mola_mola
ENSXCOG00000000957	-	87	77.249	ENSMODG00000014703	CPSF3	55	77.249	Monodelphis_domestica
ENSXCOG00000000957	-	87	80.914	ENSMALG00000016416	cpsf3	58	78.610	Monopterus_albus
ENSXCOG00000000957	-	87	87.634	ENSMALG00000011474	CPSF3	56	87.634	Monopterus_albus
ENSXCOG00000000957	-	87	80.323	MGP_CAROLIEiJ_G0017640	Cpsf3	54	80.323	Mus_caroli
ENSXCOG00000000957	-	87	80.323	ENSMUSG00000054309	Cpsf3	54	80.323	Mus_musculus
ENSXCOG00000000957	-	87	80.054	MGP_PahariEiJ_G0029397	Cpsf3	54	80.054	Mus_pahari
ENSXCOG00000000957	-	87	80.323	MGP_SPRETEiJ_G0018481	Cpsf3	54	80.323	Mus_spretus
ENSXCOG00000000957	-	87	80.108	ENSMPUG00000013213	CPSF3	54	80.108	Mustela_putorius_furo
ENSXCOG00000000957	-	87	79.570	ENSMLUG00000010636	CPSF3	54	79.570	Myotis_lucifugus
ENSXCOG00000000957	-	87	79.245	ENSNGAG00000019836	Cpsf3	54	79.245	Nannospalax_galili
ENSXCOG00000000957	-	87	79.839	ENSNBRG00000004770	cpsf3	58	78.763	Neolamprologus_brichardi
ENSXCOG00000000957	-	87	91.689	ENSNBRG00000010525	CPSF3	59	91.689	Neolamprologus_brichardi
ENSXCOG00000000957	-	87	78.976	ENSNLEG00000013359	CPSF3	57	78.976	Nomascus_leucogenys
ENSXCOG00000000957	-	86	60.811	ENSMEUG00000013117	-	54	60.811	Notamacropus_eugenii
ENSXCOG00000000957	-	87	79.515	ENSOPRG00000008902	CPSF3	54	79.515	Ochotona_princeps
ENSXCOG00000000957	-	87	78.976	ENSODEG00000003129	CPSF3	54	78.976	Octodon_degus
ENSXCOG00000000957	-	87	80.376	ENSONIG00000018812	cpsf3	54	80.376	Oreochromis_niloticus
ENSXCOG00000000957	-	87	80.054	ENSOANG00000008577	CPSF3	66	80.054	Ornithorhynchus_anatinus
ENSXCOG00000000957	-	87	79.515	ENSOCUG00000003728	CPSF3	54	79.515	Oryctolagus_cuniculus
ENSXCOG00000000957	-	87	79.570	ENSORLG00000018854	cpsf3	54	79.570	Oryzias_latipes
ENSXCOG00000000957	-	87	79.301	ENSORLG00020013331	cpsf3	57	76.613	Oryzias_latipes_hni
ENSXCOG00000000957	-	87	79.570	ENSORLG00015011017	cpsf3	58	77.151	Oryzias_latipes_hsok
ENSXCOG00000000957	-	87	79.839	ENSOMEG00000010647	cpsf3	51	79.839	Oryzias_melastigma
ENSXCOG00000000957	-	87	68.194	ENSOGAG00000001680	CPSF3	54	68.194	Otolemur_garnettii
ENSXCOG00000000957	-	87	79.784	ENSOARG00000015073	CPSF3	54	79.784	Ovis_aries
ENSXCOG00000000957	-	87	79.245	ENSPPAG00000042457	CPSF3	54	79.245	Pan_paniscus
ENSXCOG00000000957	-	87	79.784	ENSPPRG00000016790	CPSF3	57	79.784	Panthera_pardus
ENSXCOG00000000957	-	87	79.784	ENSPTIG00000003920	CPSF3	58	79.784	Panthera_tigris_altaica
ENSXCOG00000000957	-	87	79.245	ENSPTRG00000011638	CPSF3	54	79.245	Pan_troglodytes
ENSXCOG00000000957	-	87	78.976	ENSPANG00000016798	CPSF3	54	78.976	Papio_anubis
ENSXCOG00000000957	-	87	84.409	ENSPKIG00000023646	cpsf3	58	84.409	Paramormyrops_kingsleyae
ENSXCOG00000000957	-	87	79.784	ENSPSIG00000016144	CPSF3	54	79.784	Pelodiscus_sinensis
ENSXCOG00000000957	-	73	81.935	ENSPMGG00000006141	-	53	81.935	Periophthalmus_magnuspinnatus
ENSXCOG00000000957	-	87	87.366	ENSPMGG00000015311	CPSF3	92	87.366	Periophthalmus_magnuspinnatus
ENSXCOG00000000957	-	87	80.323	ENSPEMG00000017668	Cpsf3	54	80.323	Peromyscus_maniculatus_bairdii
ENSXCOG00000000957	-	87	79.784	ENSPCIG00000009823	CPSF3	55	79.784	Phascolarctos_cinereus
ENSXCOG00000000957	-	87	98.118	ENSPFOG00000010418	-	54	98.118	Poecilia_formosa
ENSXCOG00000000957	-	87	78.226	ENSPFOG00000015922	cpsf3	54	78.226	Poecilia_formosa
ENSXCOG00000000957	-	87	98.118	ENSPLAG00000021300	-	92	98.118	Poecilia_latipinna
ENSXCOG00000000957	-	87	78.226	ENSPLAG00000000882	cpsf3	54	78.226	Poecilia_latipinna
ENSXCOG00000000957	-	87	78.495	ENSPMEG00000018309	cpsf3	54	78.495	Poecilia_mexicana
ENSXCOG00000000957	-	87	78.495	ENSPREG00000014875	cpsf3	58	78.495	Poecilia_reticulata
ENSXCOG00000000957	-	87	82.527	ENSPREG00000004482	CPSF3	51	82.527	Poecilia_reticulata
ENSXCOG00000000957	-	87	78.976	ENSPPYG00000012666	CPSF3	57	78.976	Pongo_abelii
ENSXCOG00000000957	-	87	79.839	ENSPVAG00000005324	CPSF3	54	79.839	Pteropus_vampyrus
ENSXCOG00000000957	-	87	79.839	ENSPNYG00000004405	cpsf3	58	79.032	Pundamilia_nyererei
ENSXCOG00000000957	-	87	80.376	ENSPNAG00000023060	cpsf3	58	80.376	Pygocentrus_nattereri
ENSXCOG00000000957	-	87	79.893	ENSRNOG00000052418	Cpsf3	54	79.893	Rattus_norvegicus
ENSXCOG00000000957	-	87	73.315	ENSRBIG00000041615	CPSF3	56	73.315	Rhinopithecus_bieti
ENSXCOG00000000957	-	87	79.245	ENSRROG00000033792	CPSF3	55	79.245	Rhinopithecus_roxellana
ENSXCOG00000000957	-	87	72.800	ENSSBOG00000027263	CPSF3	54	73.067	Saimiri_boliviensis_boliviensis
ENSXCOG00000000957	-	87	79.515	ENSSHAG00000007024	CPSF3	54	79.515	Sarcophilus_harrisii
ENSXCOG00000000957	-	87	84.409	ENSSFOG00015002108	cpsf3	59	84.409	Scleropages_formosus
ENSXCOG00000000957	-	87	80.914	ENSSDUG00000002828	cpsf3	52	80.914	Seriola_dumerili
ENSXCOG00000000957	-	87	91.667	ENSSDUG00000018498	CPSF3	58	90.054	Seriola_dumerili
ENSXCOG00000000957	-	87	81.183	ENSSLDG00000008469	cpsf3	52	81.183	Seriola_lalandi_dorsalis
ENSXCOG00000000957	-	87	91.667	ENSSLDG00000005234	CPSF3	58	89.785	Seriola_lalandi_dorsalis
ENSXCOG00000000957	-	87	78.976	ENSSPUG00000015525	CPSF3	54	78.976	Sphenodon_punctatus
ENSXCOG00000000957	-	87	81.452	ENSSPAG00000018579	cpsf3	54	81.452	Stegastes_partitus
ENSXCOG00000000957	-	87	91.935	ENSSPAG00000002906	CPSF3	58	89.785	Stegastes_partitus
ENSXCOG00000000957	-	87	80.054	ENSSSCG00000020799	CPSF3	59	80.054	Sus_scrofa
ENSXCOG00000000957	-	87	79.515	ENSTGUG00000013016	CPSF3	54	79.515	Taeniopygia_guttata
ENSXCOG00000000957	-	87	75.871	ENSTRUG00000013905	CPSF3	91	75.871	Takifugu_rubripes
ENSXCOG00000000957	-	87	78.437	ENSTRUG00000007030	cpsf3	89	77.089	Takifugu_rubripes
ENSXCOG00000000957	-	87	76.280	ENSUAMG00000007535	CPSF3	50	80.692	Ursus_americanus
ENSXCOG00000000957	-	87	80.054	ENSUMAG00000003676	CPSF3	57	80.054	Ursus_maritimus
ENSXCOG00000000957	-	79	78.529	ENSVPAG00000008041	CPSF3	54	78.529	Vicugna_pacos
ENSXCOG00000000957	-	87	80.054	ENSVVUG00000002194	CPSF3	54	80.054	Vulpes_vulpes
ENSXCOG00000000957	-	87	76.882	ENSXETG00000008263	cpsf3	54	76.882	Xenopus_tropicalis
ENSXCOG00000000957	-	87	78.495	ENSXMAG00000009784	cpsf3	57	78.495	Xiphophorus_maculatus
ENSXCOG00000000957	-	87	99.462	ENSXMAG00000027291	CPSF3	54	99.462	Xiphophorus_maculatus