EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000001538 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 9422 bases
Position: chrKQ557207.1:21931106-21940527
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000001915	RNase_Zc3h12a	PF11977.8	2.9e-63	1	1
ENSXCOP00000001903	RNase_Zc3h12a	PF11977.8	9.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000001943	-	1614	-	ENSXCOP00000001915	537 (aa)	-	-
ENSXCOT00000001931	-	477	-	ENSXCOP00000001903	158 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000001538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000001538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000001538	-	94	51.678	ENSXCOG00000007996	-	83	58.590
ENSXCOG00000001538	-	91	44.295	ENSXCOG00000008984	zc3h12a	91	44.295

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000001538	-	92	50.000	ENSG00000163874	ZC3H12A	78	61.261	Homo_sapiens
ENSXCOG00000001538	-	91	50.694	ENSAPOG00000001632	-	57	61.484	Acanthochromis_polyacanthus
ENSXCOG00000001538	-	91	80.137	ENSAPOG00000005848	-	96	70.280	Acanthochromis_polyacanthus
ENSXCOG00000001538	-	91	48.667	ENSAMEG00000000991	ZC3H12A	52	59.740	Ailuropoda_melanoleuca
ENSXCOG00000001538	-	99	41.093	ENSACIG00000004135	si:dkey-206d17.12	80	55.022	Amphilophus_citrinellus
ENSXCOG00000001538	-	91	85.714	ENSACIG00000006790	-	96	80.000	Amphilophus_citrinellus
ENSXCOG00000001538	-	91	44.218	ENSAOCG00000014326	-	87	53.778	Amphiprion_ocellaris
ENSXCOG00000001538	-	93	45.455	ENSAOCG00000003866	-	87	56.067	Amphiprion_ocellaris
ENSXCOG00000001538	-	92	43.293	ENSAOCG00000001288	-	85	56.466	Amphiprion_ocellaris
ENSXCOG00000001538	-	91	79.452	ENSAOCG00000009106	-	96	70.280	Amphiprion_ocellaris
ENSXCOG00000001538	-	92	46.012	ENSAPEG00000005727	-	98	46.012	Amphiprion_percula
ENSXCOG00000001538	-	91	79.452	ENSAPEG00000004229	-	96	70.455	Amphiprion_percula
ENSXCOG00000001538	-	91	44.218	ENSAPEG00000021795	si:dkey-206d17.12	87	53.778	Amphiprion_percula
ENSXCOG00000001538	-	92	43.902	ENSAPEG00000022263	-	85	56.897	Amphiprion_percula
ENSXCOG00000001538	-	91	80.952	ENSATEG00000013053	-	81	87.500	Anabas_testudineus
ENSXCOG00000001538	-	92	45.399	ENSATEG00000002260	-	83	57.322	Anabas_testudineus
ENSXCOG00000001538	-	91	42.949	ENSATEG00000006140	si:dkey-206d17.12	88	43.506	Anabas_testudineus
ENSXCOG00000001538	-	92	50.000	ENSANAG00000009908	ZC3H12A	78	60.538	Aotus_nancymaae
ENSXCOG00000001538	-	91	83.562	ENSACLG00000018534	-	94	67.601	Astatotilapia_calliptera
ENSXCOG00000001538	-	90	41.290	ENSAMXG00000001736	zc3h12a	67	49.144	Astyanax_mexicanus
ENSXCOG00000001538	-	91	59.627	ENSAMXG00000030754	-	54	71.336	Astyanax_mexicanus
ENSXCOG00000001538	-	94	40.260	ENSAMXG00000029641	si:dkey-206d17.12	75	54.911	Astyanax_mexicanus
ENSXCOG00000001538	-	92	49.020	ENSBTAG00000011316	ZC3H12A	51	61.409	Bos_taurus
ENSXCOG00000001538	-	91	49.333	ENSCAFG00000003304	ZC3H12A	51	60.678	Canis_familiaris
ENSXCOG00000001538	-	91	49.333	ENSCAFG00020008620	ZC3H12A	51	60.678	Canis_lupus_dingo
ENSXCOG00000001538	-	92	49.020	ENSCHIG00000021957	ZC3H12A	51	60.667	Capra_hircus
ENSXCOG00000001538	-	91	50.336	ENSCAPG00000015365	ZC3H12A	53	62.069	Cavia_aperea
ENSXCOG00000001538	-	91	48.993	ENSCPOG00000011081	ZC3H12A	53	61.379	Cavia_porcellus
ENSXCOG00000001538	-	89	50.676	ENSCATG00000037700	ZC3H12A	78	59.910	Cercocebus_atys
ENSXCOG00000001538	-	89	50.676	ENSCSAG00000001106	ZC3H12A	91	43.186	Chlorocebus_sabaeus
ENSXCOG00000001538	-	89	51.351	ENSCANG00000042287	ZC3H12A	78	60.360	Colobus_angolensis_palliatus
ENSXCOG00000001538	-	92	47.590	ENSCSEG00000010073	-	81	55.144	Cynoglossus_semilaevis
ENSXCOG00000001538	-	94	48.125	ENSCVAG00000016808	-	88	58.079	Cyprinodon_variegatus
ENSXCOG00000001538	-	98	81.801	ENSCVAG00000001077	-	99	80.755	Cyprinodon_variegatus
ENSXCOG00000001538	-	90	43.151	ENSDARG00000005271	zc3h12a	78	61.168	Danio_rerio
ENSXCOG00000001538	-	91	48.000	ENSDNOG00000035006	ZC3H12A	92	41.361	Dasypus_novemcinctus
ENSXCOG00000001538	-	55	47.869	ENSETEG00000018311	ZC3H12A	61	47.869	Echinops_telfairi
ENSXCOG00000001538	-	91	49.333	ENSEASG00005012220	ZC3H12A	50	61.168	Equus_asinus_asinus
ENSXCOG00000001538	-	73	47.967	ENSEEUG00000005907	ZC3H12A	55	60.854	Erinaceus_europaeus
ENSXCOG00000001538	-	89	41.216	ENSELUG00000007368	si:dkey-206d17.12	50	56.329	Esox_lucius
ENSXCOG00000001538	-	82	67.153	ENSELUG00000018728	-	89	52.269	Esox_lucius
ENSXCOG00000001538	-	97	43.529	ENSFHEG00000021225	-	92	42.604	Fundulus_heteroclitus
ENSXCOG00000001538	-	100	78.261	ENSFHEG00000011425	-	100	77.596	Fundulus_heteroclitus
ENSXCOG00000001538	-	99	38.927	ENSFHEG00000001174	si:dkey-206d17.12	53	55.346	Fundulus_heteroclitus
ENSXCOG00000001538	-	88	39.041	ENSGMOG00000007388	-	99	38.354	Gadus_morhua
ENSXCOG00000001538	-	91	47.917	ENSGMOG00000014437	-	94	66.212	Gadus_morhua
ENSXCOG00000001538	-	91	38.926	ENSGMOG00000017603	si:dkey-206d17.12	61	53.020	Gadus_morhua
ENSXCOG00000001538	-	98	38.391	ENSGAFG00000019001	si:dkey-206d17.12	93	37.814	Gambusia_affinis
ENSXCOG00000001538	-	99	91.529	ENSGAFG00000009523	-	99	90.792	Gambusia_affinis
ENSXCOG00000001538	-	92	42.038	ENSGACG00000002341	si:dkey-206d17.12	55	56.811	Gasterosteus_aculeatus
ENSXCOG00000001538	-	89	81.818	ENSGACG00000006636	-	99	81.329	Gasterosteus_aculeatus
ENSXCOG00000001538	-	92	50.000	ENSGGOG00000009268	ZC3H12A	91	43.009	Gorilla_gorilla
ENSXCOG00000001538	-	91	83.562	ENSHBUG00000021584	-	85	87.444	Haplochromis_burtoni
ENSXCOG00000001538	-	92	46.939	ENSHCOG00000008878	-	59	43.671	Hippocampus_comes
ENSXCOG00000001538	-	86	75.182	ENSHCOG00000007306	-	92	68.790	Hippocampus_comes
ENSXCOG00000001538	-	98	38.051	ENSHCOG00000004255	si:dkey-206d17.12	91	47.436	Hippocampus_comes
ENSXCOG00000001538	-	90	63.699	ENSIPUG00000011663	-	99	52.793	Ictalurus_punctatus
ENSXCOG00000001538	-	91	50.331	ENSJJAG00000004252	Zc3h12a	53	58.025	Jaculus_jaculus
ENSXCOG00000001538	-	92	43.243	ENSKMAG00000002156	ZC3H12A	85	53.125	Kryptolebias_marmoratus
ENSXCOG00000001538	-	91	80.272	ENSKMAG00000014401	-	100	67.690	Kryptolebias_marmoratus
ENSXCOG00000001538	-	94	45.294	ENSKMAG00000013285	-	86	58.190	Kryptolebias_marmoratus
ENSXCOG00000001538	-	91	46.584	ENSLBEG00000012554	-	87	46.250	Labrus_bergylta
ENSXCOG00000001538	-	99	62.414	ENSLBEG00000012121	-	99	62.478	Labrus_bergylta
ENSXCOG00000001538	-	97	37.043	ENSLBEG00000017593	si:dkey-206d17.12	51	53.741	Labrus_bergylta
ENSXCOG00000001538	-	92	48.000	ENSLACG00000017365	ZC3H12A	50	63.636	Latimeria_chalumnae
ENSXCOG00000001538	-	86	65.714	ENSLOCG00000017000	-	100	51.648	Lepisosteus_oculatus
ENSXCOG00000001538	-	91	46.753	ENSLOCG00000003232	si:dkey-206d17.12	52	59.877	Lepisosteus_oculatus
ENSXCOG00000001538	-	92	50.314	ENSLAFG00000018720	ZC3H12A	50	59.807	Loxodonta_africana
ENSXCOG00000001538	-	89	50.676	ENSMFAG00000032647	ZC3H12A	78	59.910	Macaca_fascicularis
ENSXCOG00000001538	-	89	50.676	ENSMMUG00000010323	ZC3H12A	91	42.531	Macaca_mulatta
ENSXCOG00000001538	-	89	50.676	ENSMNEG00000040453	ZC3H12A	78	59.910	Macaca_nemestrina
ENSXCOG00000001538	-	89	50.676	ENSMLEG00000034570	ZC3H12A	78	59.910	Mandrillus_leucophaeus
ENSXCOG00000001538	-	92	45.062	ENSMAMG00000021794	-	94	47.500	Mastacembelus_armatus
ENSXCOG00000001538	-	91	81.633	ENSMAMG00000004463	-	84	86.607	Mastacembelus_armatus
ENSXCOG00000001538	-	94	45.860	ENSMZEG00005019137	-	92	47.134	Maylandia_zebra
ENSXCOG00000001538	-	92	44.586	ENSMZEG00005023410	ZC3H12A	78	54.783	Maylandia_zebra
ENSXCOG00000001538	-	91	83.562	ENSMZEG00005015555	-	94	67.601	Maylandia_zebra
ENSXCOG00000001538	-	99	42.024	ENSMGAG00000003371	ZC3H12A	51	62.373	Meleagris_gallopavo
ENSXCOG00000001538	-	94	48.077	ENSMICG00000004790	ZC3H12A	91	41.682	Microcebus_murinus
ENSXCOG00000001538	-	92	48.466	ENSMMOG00000005728	-	88	46.795	Mola_mola
ENSXCOG00000001538	-	91	77.027	ENSMMOG00000014855	-	93	77.027	Mola_mola
ENSXCOG00000001538	-	91	43.506	ENSMMOG00000000727	zc3h12a	88	43.506	Mola_mola
ENSXCOG00000001538	-	91	41.290	ENSMMOG00000013604	si:dkey-206d17.12	53	56.766	Mola_mola
ENSXCOG00000001538	-	89	81.250	ENSMALG00000018908	-	99	59.829	Monopterus_albus
ENSXCOG00000001538	-	91	50.658	MGP_PahariEiJ_G0028793	Zc3h12a	52	59.177	Mus_pahari
ENSXCOG00000001538	-	94	49.682	MGP_SPRETEiJ_G0027441	Zc3h12a	82	58.874	Mus_spretus
ENSXCOG00000001538	-	91	48.667	ENSMPUG00000014758	ZC3H12A	52	60.606	Mustela_putorius_furo
ENSXCOG00000001538	-	91	48.667	ENSNGAG00000018725	Zc3h12a	92	41.361	Nannospalax_galili
ENSXCOG00000001538	-	92	45.223	ENSNBRG00000014376	si:dkey-206d17.12	51	59.333	Neolamprologus_brichardi
ENSXCOG00000001538	-	94	45.223	ENSNBRG00000012175	-	92	47.403	Neolamprologus_brichardi
ENSXCOG00000001538	-	91	82.313	ENSNBRG00000010961	-	83	87.727	Neolamprologus_brichardi
ENSXCOG00000001538	-	92	40.000	ENSNLEG00000011545	ZC3H12A	91	40.180	Nomascus_leucogenys
ENSXCOG00000001538	-	97	32.925	ENSMEUG00000003389	ZC3H12A	99	32.447	Notamacropus_eugenii
ENSXCOG00000001538	-	87	45.161	ENSONIG00000016235	zc3h12a	53	59.603	Oreochromis_niloticus
ENSXCOG00000001538	-	92	44.586	ENSONIG00000013685	si:dkey-206d17.12	54	59.000	Oreochromis_niloticus
ENSXCOG00000001538	-	91	49.660	ENSOANG00000002060	ZC3H12A	50	59.740	Ornithorhynchus_anatinus
ENSXCOG00000001538	-	92	49.342	ENSOCUG00000010856	ZC3H12A	75	62.199	Oryctolagus_cuniculus
ENSXCOG00000001538	-	94	46.154	ENSORLG00000009473	ZC3H12A	85	54.783	Oryzias_latipes
ENSXCOG00000001538	-	89	79.861	ENSORLG00000015280	-	99	60.563	Oryzias_latipes
ENSXCOG00000001538	-	99	40.175	ENSORLG00020016107	-	55	55.987	Oryzias_latipes_hni
ENSXCOG00000001538	-	89	80.556	ENSORLG00020008580	-	87	60.739	Oryzias_latipes_hni
ENSXCOG00000001538	-	99	40.351	ENSORLG00015007634	ZC3H12A	98	39.965	Oryzias_latipes_hsok
ENSXCOG00000001538	-	89	80.556	ENSORLG00015003680	-	87	60.915	Oryzias_latipes_hsok
ENSXCOG00000001538	-	92	46.104	ENSOMEG00000005602	si:dkey-206d17.12	51	59.310	Oryzias_melastigma
ENSXCOG00000001538	-	89	81.250	ENSOMEG00000011669	-	99	60.877	Oryzias_melastigma
ENSXCOG00000001538	-	92	49.020	ENSOARG00000019760	ZC3H12A	71	59.283	Ovis_aries
ENSXCOG00000001538	-	92	49.342	ENSPPAG00000041054	ZC3H12A	78	59.910	Pan_paniscus
ENSXCOG00000001538	-	92	48.026	ENSPTIG00000012943	ZC3H12A	80	58.482	Panthera_tigris_altaica
ENSXCOG00000001538	-	92	49.342	ENSPTRG00000000544	ZC3H12A	78	59.910	Pan_troglodytes
ENSXCOG00000001538	-	89	50.676	ENSPANG00000011821	ZC3H12A	78	59.910	Papio_anubis
ENSXCOG00000001538	-	91	64.865	ENSPKIG00000019720	-	75	71.616	Paramormyrops_kingsleyae
ENSXCOG00000001538	-	91	48.000	ENSPSIG00000009198	ZC3H12A	51	62.034	Pelodiscus_sinensis
ENSXCOG00000001538	-	87	41.497	ENSPMGG00000004114	zc3h12a	52	56.314	Periophthalmus_magnuspinnatus
ENSXCOG00000001538	-	98	41.219	ENSPMGG00000009790	-	95	40.522	Periophthalmus_magnuspinnatus
ENSXCOG00000001538	-	100	94.107	ENSPFOG00000004135	-	100	94.107	Poecilia_formosa
ENSXCOG00000001538	-	73	36.567	ENSPFOG00000002933	si:dkey-206d17.12	99	35.885	Poecilia_formosa
ENSXCOG00000001538	-	73	37.313	ENSPLAG00000016243	si:dkey-206d17.12	91	36.124	Poecilia_latipinna
ENSXCOG00000001538	-	99	94.238	ENSPLAG00000001211	-	99	94.238	Poecilia_latipinna
ENSXCOG00000001538	-	99	39.602	ENSPMEG00000011188	si:dkey-206d17.12	94	38.204	Poecilia_mexicana
ENSXCOG00000001538	-	91	96.528	ENSPMEG00000009279	-	88	99.543	Poecilia_mexicana
ENSXCOG00000001538	-	94	47.853	ENSPREG00000001607	-	73	58.222	Poecilia_reticulata
ENSXCOG00000001538	-	99	94.270	ENSPREG00000020369	-	95	93.530	Poecilia_reticulata
ENSXCOG00000001538	-	92	49.342	ENSPPYG00000001534	ZC3H12A	91	42.254	Pongo_abelii
ENSXCOG00000001538	-	91	83.562	ENSPNYG00000010663	-	94	67.601	Pundamilia_nyererei
ENSXCOG00000001538	-	94	58.788	ENSPNAG00000012124	-	72	59.005	Pygocentrus_nattereri
ENSXCOG00000001538	-	98	41.513	ENSPNAG00000015494	zc3h12a	73	48.770	Pygocentrus_nattereri
ENSXCOG00000001538	-	88	52.055	ENSRBIG00000042237	ZC3H12A	91	42.962	Rhinopithecus_bieti
ENSXCOG00000001538	-	89	51.351	ENSRROG00000037444	ZC3H12A	78	60.360	Rhinopithecus_roxellana
ENSXCOG00000001538	-	92	51.634	ENSSBOG00000028357	ZC3H12A	91	43.694	Saimiri_boliviensis_boliviensis
ENSXCOG00000001538	-	59	57.000	ENSSFOG00015005925	zc3h12a	57	65.698	Scleropages_formosus
ENSXCOG00000001538	-	88	83.099	ENSSMAG00000017632	-	99	61.026	Scophthalmus_maximus
ENSXCOG00000001538	-	91	83.562	ENSSDUG00000010581	-	90	85.612	Seriola_dumerili
ENSXCOG00000001538	-	88	48.592	ENSSDUG00000013237	-	94	50.327	Seriola_dumerili
ENSXCOG00000001538	-	92	43.671	ENSSLDG00000009317	si:dkey-206d17.12	83	54.386	Seriola_lalandi_dorsalis
ENSXCOG00000001538	-	91	83.562	ENSSLDG00000022022	-	95	64.516	Seriola_lalandi_dorsalis
ENSXCOG00000001538	-	91	84.828	ENSSPAG00000022537	-	94	69.788	Stegastes_partitus
ENSXCOG00000001538	-	99	40.925	ENSSPAG00000020938	si:dkey-206d17.12	53	57.667	Stegastes_partitus
ENSXCOG00000001538	-	92	50.000	ENSSSCG00000037815	ZC3H12A	95	41.783	Sus_scrofa
ENSXCOG00000001538	-	99	39.206	ENSTRUG00000010565	si:dkey-206d17.12	99	36.034	Takifugu_rubripes
ENSXCOG00000001538	-	92	43.243	ENSTNIG00000001274	si:dkey-206d17.12	56	57.383	Tetraodon_nigroviridis
ENSXCOG00000001538	-	92	45.963	ENSTNIG00000014519	-	88	55.274	Tetraodon_nigroviridis
ENSXCOG00000001538	-	91	48.667	ENSTTRG00000008591	ZC3H12A	50	59.539	Tursiops_truncatus
ENSXCOG00000001538	-	91	48.667	ENSUAMG00000014105	ZC3H12A	51	59.740	Ursus_americanus
ENSXCOG00000001538	-	91	48.667	ENSUMAG00000001122	ZC3H12A	53	59.871	Ursus_maritimus
ENSXCOG00000001538	-	91	49.333	ENSVVUG00000023171	ZC3H12A	51	60.678	Vulpes_vulpes
ENSXCOG00000001538	-	90	49.007	ENSXETG00000011465	zc3h12a	53	60.943	Xenopus_tropicalis
ENSXCOG00000001538	-	100	100.000	ENSXMAG00000005023	-	100	100.000	Xiphophorus_maculatus
ENSXCOG00000001538	-	94	46.667	ENSXMAG00000014715	-	83	58.590	Xiphophorus_maculatus
ENSXCOG00000001538	-	99	38.208	ENSXMAG00000025043	si:dkey-206d17.12	94	37.660	Xiphophorus_maculatus