EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000001542 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 5658 bases
Position: chrKQ557205.1:1794255-1799912
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000015514	GTP_EFTU	PF00009.27	2e-53	1	1
ENSXCOP00000014032	GTP_EFTU	PF00009.27	2.2e-53	1	1
ENSXCOP00000013572	GTP_EFTU	PF00009.27	2.3e-53	1	1
ENSXCOP00000016702	GTP_EFTU	PF00009.27	7.1e-42	1	1
ENSXCOP00000017727	GTP_EFTU	PF00009.27	1.9e-19	1	1
ENSXCOP00000015514	GTP_EFTU_D2	PF03144.25	2.7e-15	1	1
ENSXCOP00000014032	GTP_EFTU_D2	PF03144.25	2.7e-15	1	1
ENSXCOP00000013572	GTP_EFTU_D2	PF03144.25	3.1e-15	1	1
ENSXCOP00000016702	GTP_EFTU_D2	PF03144.25	3.2e-15	1	1
ENSXCOP00000016702	GTP_EFTU_D3	PF03143.17	2.2e-42	1	1
ENSXCOP00000015514	GTP_EFTU_D3	PF03143.17	2.4e-42	1	1
ENSXCOP00000014032	GTP_EFTU_D3	PF03143.17	2.4e-42	1	1
ENSXCOP00000013572	GTP_EFTU_D3	PF03143.17	9.3e-42	1	1
ENSXCOP00000017727	GTP_EFTU_D3	PF03143.17	4.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000014207	-	1359	-	ENSXCOP00000014032	452 (aa)	-	-
ENSXCOT00000016917	-	1326	-	ENSXCOP00000016702	441 (aa)	-	-
ENSXCOT00000013739	-	1371	-	ENSXCOP00000013572	456 (aa)	-	-
ENSXCOT00000015707	-	1386	-	ENSXCOP00000015514	461 (aa)	-	UPI0003B6459C
ENSXCOT00000017951	-	531	-	ENSXCOP00000017727	176 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000001542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000001542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000001542	-	84	56.410	ENSXCOG00000005323	hbs1l	63	42.105
ENSXCOG00000001542	-	100	95.349	ENSXCOG00000011374	EEF1A1	98	87.832
ENSXCOG00000001542	-	98	37.613	ENSXCOG00000003084	-	86	37.698
ENSXCOG00000001542	-	98	76.829	ENSXCOG00000012296	si:dkey-37o8.1	99	67.411
ENSXCOG00000001542	-	90	85.990	ENSXCOG00000013465	eef1a1b	98	86.634
ENSXCOG00000001542	-	94	36.706	ENSXCOG00000016099	gspt1l	83	36.706
ENSXCOG00000001542	-	100	97.674	ENSXCOG00000013395	-	97	90.179

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000001542	-	99	93.274	ENSAPOG00000004714	-	98	93.348	Acanthochromis_polyacanthus
ENSXCOG00000001542	-	90	93.947	ENSACIG00000001219	-	97	94.045	Amphilophus_citrinellus
ENSXCOG00000001542	-	100	95.349	ENSAOCG00000022039	-	98	90.466	Amphiprion_ocellaris
ENSXCOG00000001542	-	88	94.472	ENSAOCG00000022002	-	98	94.789	Amphiprion_ocellaris
ENSXCOG00000001542	-	100	95.349	ENSAPEG00000016361	-	98	91.131	Amphiprion_percula
ENSXCOG00000001542	-	100	98.889	ENSATEG00000003244	-	95	95.787	Anabas_testudineus
ENSXCOG00000001542	-	100	98.837	ENSACLG00000022560	-	98	94.457	Astatotilapia_calliptera
ENSXCOG00000001542	-	100	94.253	WBGene00001169	eef-1A.2	98	82.743	Caenorhabditis_elegans
ENSXCOG00000001542	-	100	94.253	WBGene00001168	eef-1A.1	98	82.743	Caenorhabditis_elegans
ENSXCOG00000001542	-	100	90.805	ENSCING00000007703	-	97	78.289	Ciona_intestinalis
ENSXCOG00000001542	-	94	91.954	ENSCING00000018894	-	97	80.617	Ciona_intestinalis
ENSXCOG00000001542	-	94	89.655	ENSCING00000005126	-	98	81.319	Ciona_intestinalis
ENSXCOG00000001542	-	98	93.976	ENSCING00000021478	-	98	85.078	Ciona_intestinalis
ENSXCOG00000001542	-	97	88.372	ENSCSAVG00000001085	-	89	76.906	Ciona_savignyi
ENSXCOG00000001542	-	94	90.909	ENSCSAVG00000009663	-	98	81.978	Ciona_savignyi
ENSXCOG00000001542	-	97	94.118	ENSCSAVG00000006357	-	96	94.964	Ciona_savignyi
ENSXCOG00000001542	-	94	87.640	ENSCSAVG00000003196	-	98	80.828	Ciona_savignyi
ENSXCOG00000001542	-	90	85.749	ENSCSEG00000007972	-	98	86.139	Cynoglossus_semilaevis
ENSXCOG00000001542	-	100	97.674	ENSCSEG00000008011	-	98	95.344	Cynoglossus_semilaevis
ENSXCOG00000001542	-	89	85.680	ENSCSEG00000007992	-	97	85.856	Cynoglossus_semilaevis
ENSXCOG00000001542	-	100	100.000	ENSCVAG00000019356	-	100	98.482	Cyprinodon_variegatus
ENSXCOG00000001542	-	100	95.349	FBgn0284245	eEF1alpha1	97	87.277	Drosophila_melanogaster
ENSXCOG00000001542	-	94	95.349	FBgn0000557	eEF1alpha2	98	85.619	Drosophila_melanogaster
ENSXCOG00000001542	-	99	91.765	ENSEBUG00000015814	-	98	83.149	Eptatretus_burgeri
ENSXCOG00000001542	-	100	98.889	ENSFHEG00000015054	-	100	97.831	Fundulus_heteroclitus
ENSXCOG00000001542	-	100	100.000	ENSGAFG00000014646	-	100	99.783	Gambusia_affinis
ENSXCOG00000001542	-	100	96.512	ENSGACG00000002182	-	98	95.565	Gasterosteus_aculeatus
ENSXCOG00000001542	-	100	97.674	ENSGACG00000002143	-	98	93.792	Gasterosteus_aculeatus
ENSXCOG00000001542	-	58	91.406	ENSHBUG00000017166	-	92	91.463	Haplochromis_burtoni
ENSXCOG00000001542	-	100	96.512	ENSHCOG00000008468	-	98	95.344	Hippocampus_comes
ENSXCOG00000001542	-	99	93.023	ENSHCOG00000008489	-	99	83.913	Hippocampus_comes
ENSXCOG00000001542	-	99	94.186	ENSLBEG00000002955	-	98	84.479	Labrus_bergylta
ENSXCOG00000001542	-	100	97.674	ENSLBEG00000002759	-	98	94.457	Labrus_bergylta
ENSXCOG00000001542	-	100	100.000	ENSMAMG00000007715	-	100	97.180	Mastacembelus_armatus
ENSXCOG00000001542	-	99	95.349	ENSMMOG00000001106	-	98	86.253	Mola_mola
ENSXCOG00000001542	-	97	86.047	ENSMMOG00000018160	-	95	86.957	Mola_mola
ENSXCOG00000001542	-	100	96.512	ENSMMOG00000001165	-	100	94.444	Mola_mola
ENSXCOG00000001542	-	100	83.117	ENSNBRG00000017346	-	97	82.965	Neolamprologus_brichardi
ENSXCOG00000001542	-	78	91.193	ENSONIG00000017760	-	98	91.193	Oreochromis_niloticus
ENSXCOG00000001542	-	100	97.778	ENSORLG00000007614	eef1a	100	97.180	Oryzias_latipes
ENSXCOG00000001542	-	100	97.778	ENSORLG00015002397	-	100	97.180	Oryzias_latipes_hsok
ENSXCOG00000001542	-	100	98.889	ENSOMEG00000018226	-	100	98.265	Oryzias_melastigma
ENSXCOG00000001542	-	95	48.730	ENSPMGG00000022427	-	97	60.000	Periophthalmus_magnuspinnatus
ENSXCOG00000001542	-	100	97.674	ENSPMGG00000023911	-	100	97.674	Periophthalmus_magnuspinnatus
ENSXCOG00000001542	-	100	100.000	ENSPFOG00000003924	-	100	100.000	Poecilia_formosa
ENSXCOG00000001542	-	100	100.000	ENSPLAG00000004316	-	100	100.000	Poecilia_latipinna
ENSXCOG00000001542	-	100	100.000	ENSPMEG00000001010	-	100	99.783	Poecilia_mexicana
ENSXCOG00000001542	-	100	100.000	ENSPREG00000008243	-	100	99.349	Poecilia_reticulata
ENSXCOG00000001542	-	100	98.837	ENSPNYG00000007263	-	98	94.457	Pundamilia_nyererei
ENSXCOG00000001542	-	90	94.118	YPR080W	TEF1	98	80.488	Saccharomyces_cerevisiae
ENSXCOG00000001542	-	90	94.118	YBR118W	TEF2	98	80.488	Saccharomyces_cerevisiae
ENSXCOG00000001542	-	94	94.118	ENSSMAG00000018469	-	98	83.510	Scophthalmus_maximus
ENSXCOG00000001542	-	55	93.033	ENSSMAG00000016277	-	96	93.033	Scophthalmus_maximus
ENSXCOG00000001542	-	100	97.674	ENSSDUG00000008198	-	98	95.787	Seriola_dumerili
ENSXCOG00000001542	-	99	93.498	ENSSPAG00000001710	-	98	93.570	Stegastes_partitus
ENSXCOG00000001542	-	100	97.674	ENSTRUG00000005727	ef-1a	98	95.565	Takifugu_rubripes
ENSXCOG00000001542	-	99	94.186	ENSTRUG00000005066	-	98	86.253	Takifugu_rubripes
ENSXCOG00000001542	-	100	97.674	ENSTNIG00000002619	-	98	94.678	Tetraodon_nigroviridis
ENSXCOG00000001542	-	99	95.349	ENSTNIG00000002617	-	94	83.742	Tetraodon_nigroviridis