EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000001797 (Gene tree)
Gene ID: -
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: high density lipoprotein binding protein b
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 18232 bases
Position: chrKQ557206.1:11178731-11196962
Accession: ZDB-GENE-030131-6822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	1	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	2	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	3	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	4	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	5	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	6	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	7	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	8	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	9	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	10	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	11	12
ENSXCOP00000002249	KH_1	PF00013.29	1.6e-152	12	12

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000002281	-	3519	-	ENSXCOP00000002249	1172 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000001797's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000001797's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000001797	hdlbpb	100	53.906	ENSXCOG00000005943	hdlbpa	100	54.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000001797	hdlbpb	100	83.990	ENSAPOG00000006904	hdlbpb	100	83.990	Acanthochromis_polyacanthus
ENSXCOG00000001797	hdlbpb	100	78.148	ENSACIG00000016154	hdlbpb	100	78.148	Amphilophus_citrinellus
ENSXCOG00000001797	hdlbpb	100	68.722	ENSAOCG00000004083	hdlbpb	100	84.229	Amphiprion_ocellaris
ENSXCOG00000001797	hdlbpb	100	68.722	ENSAPEG00000012270	hdlbpb	100	84.229	Amphiprion_percula
ENSXCOG00000001797	hdlbpb	100	84.110	ENSATEG00000019877	hdlbpb	100	84.110	Anabas_testudineus
ENSXCOG00000001797	hdlbpb	100	61.796	ENSACAG00000003606	-	100	61.796	Anolis_carolinensis
ENSXCOG00000001797	hdlbpb	100	83.871	ENSACLG00000006618	hdlbpb	100	83.871	Astatotilapia_calliptera
ENSXCOG00000001797	hdlbpb	100	74.917	ENSAMXG00000019946	hdlbpb	100	74.917	Astyanax_mexicanus
ENSXCOG00000001797	hdlbpb	100	83.393	ENSCSEG00000000955	hdlbpb	100	83.393	Cynoglossus_semilaevis
ENSXCOG00000001797	hdlbpb	100	84.707	ENSCVAG00000005345	hdlbpb	100	84.707	Cyprinodon_variegatus
ENSXCOG00000001797	hdlbpb	99	64.413	ENSDARG00000061864	hdlbpb	99	64.502	Danio_rerio
ENSXCOG00000001797	hdlbpb	92	66.915	ENSEBUG00000005304	hdlbpb	96	66.915	Eptatretus_burgeri
ENSXCOG00000001797	hdlbpb	100	73.279	ENSELUG00000019925	hdlbpb	100	73.443	Esox_lucius
ENSXCOG00000001797	hdlbpb	100	58.153	ENSFHEG00000001701	hdlbpb	100	58.153	Fundulus_heteroclitus
ENSXCOG00000001797	hdlbpb	95	83.412	ENSGMOG00000004522	hdlbpb	76	83.412	Gadus_morhua
ENSXCOG00000001797	hdlbpb	100	85.291	ENSGAFG00000005278	hdlbpb	100	85.291	Gambusia_affinis
ENSXCOG00000001797	hdlbpb	99	65.569	ENSGACG00000019361	hdlbpb	100	65.569	Gasterosteus_aculeatus
ENSXCOG00000001797	hdlbpb	100	83.751	ENSHBUG00000018434	hdlbpb	100	83.751	Haplochromis_burtoni
ENSXCOG00000001797	hdlbpb	100	64.960	ENSIPUG00000003291	HDLBP	100	64.960	Ictalurus_punctatus
ENSXCOG00000001797	hdlbpb	100	83.871	ENSKMAG00000016562	hdlbpb	100	83.871	Kryptolebias_marmoratus
ENSXCOG00000001797	hdlbpb	100	83.154	ENSLBEG00000027855	hdlbpb	100	83.154	Labrus_bergylta
ENSXCOG00000001797	hdlbpb	100	62.428	ENSLACG00000007661	hdlbpb	100	62.428	Latimeria_chalumnae
ENSXCOG00000001797	hdlbpb	100	70.659	ENSLOCG00000013909	hdlbpb	100	70.659	Lepisosteus_oculatus
ENSXCOG00000001797	hdlbpb	100	83.632	ENSMAMG00000003035	hdlbpb	100	83.632	Mastacembelus_armatus
ENSXCOG00000001797	hdlbpb	100	83.871	ENSMZEG00005021465	hdlbpb	100	83.871	Maylandia_zebra
ENSXCOG00000001797	hdlbpb	100	68.913	ENSMMOG00000012525	hdlbpb	100	68.913	Mola_mola
ENSXCOG00000001797	hdlbpb	100	83.134	ENSMALG00000008938	hdlbpb	100	83.134	Monopterus_albus
ENSXCOG00000001797	hdlbpb	100	83.990	ENSNBRG00000002236	hdlbpb	100	83.990	Neolamprologus_brichardi
ENSXCOG00000001797	hdlbpb	100	83.871	ENSONIG00000009211	hdlbpb	100	68.756	Oreochromis_niloticus
ENSXCOG00000001797	hdlbpb	100	83.154	ENSORLG00000006581	hdlbpb	100	66.930	Oryzias_latipes
ENSXCOG00000001797	hdlbpb	100	83.274	ENSORLG00020010012	hdlbpb	100	67.908	Oryzias_latipes_hni
ENSXCOG00000001797	hdlbpb	100	83.393	ENSORLG00015006863	hdlbpb	100	72.402	Oryzias_latipes_hsok
ENSXCOG00000001797	hdlbpb	100	83.871	ENSOMEG00000011131	hdlbpb	100	83.871	Oryzias_melastigma
ENSXCOG00000001797	hdlbpb	100	79.331	ENSPKIG00000005966	hdlbpb	100	79.331	Paramormyrops_kingsleyae
ENSXCOG00000001797	hdlbpb	85	93.889	ENSPMGG00000019853	hdlbpb	99	93.889	Periophthalmus_magnuspinnatus
ENSXCOG00000001797	hdlbpb	95	65.827	ENSPMAG00000002131	hdlbpb	99	65.827	Petromyzon_marinus
ENSXCOG00000001797	hdlbpb	91	63.799	ENSPMAG00000000249	-	99	63.799	Petromyzon_marinus
ENSXCOG00000001797	hdlbpb	100	84.923	ENSPFOG00000008755	hdlbpb	100	84.923	Poecilia_formosa
ENSXCOG00000001797	hdlbpb	100	85.528	ENSPLAG00000007055	hdlbpb	100	85.528	Poecilia_latipinna
ENSXCOG00000001797	hdlbpb	100	85.528	ENSPMEG00000001952	hdlbpb	100	85.528	Poecilia_mexicana
ENSXCOG00000001797	hdlbpb	100	85.409	ENSPREG00000012848	hdlbpb	100	85.409	Poecilia_reticulata
ENSXCOG00000001797	hdlbpb	100	83.871	ENSPNYG00000022467	hdlbpb	100	83.871	Pundamilia_nyererei
ENSXCOG00000001797	hdlbpb	100	78.973	ENSPNAG00000011104	hdlbpb	100	65.317	Pygocentrus_nattereri
ENSXCOG00000001797	hdlbpb	100	78.973	ENSSFOG00015023199	hdlbpb	100	78.973	Scleropages_formosus
ENSXCOG00000001797	hdlbpb	100	68.064	ENSSMAG00000008790	hdlbpb	100	68.064	Scophthalmus_maximus
ENSXCOG00000001797	hdlbpb	100	84.229	ENSSDUG00000020694	hdlbpb	100	84.229	Seriola_dumerili
ENSXCOG00000001797	hdlbpb	100	69.037	ENSSLDG00000020807	hdlbpb	100	69.037	Seriola_lalandi_dorsalis
ENSXCOG00000001797	hdlbpb	100	76.344	ENSSPUG00000018688	-	100	61.831	Sphenodon_punctatus
ENSXCOG00000001797	hdlbpb	100	84.349	ENSSPAG00000016969	hdlbpb	100	84.349	Stegastes_partitus
ENSXCOG00000001797	hdlbpb	97	82.557	ENSTRUG00000012888	hdlbpb	99	82.557	Takifugu_rubripes
ENSXCOG00000001797	hdlbpb	99	66.813	ENSTNIG00000002555	hdlbpb	100	66.813	Tetraodon_nigroviridis
ENSXCOG00000001797	hdlbpb	100	86.002	ENSXMAG00000015633	hdlbpb	100	70.341	Xiphophorus_maculatus