EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000001804 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 12280 bases
Position: chrKQ557206.1:11271593-11283872
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000002261	RNA_pol_Rpb1_5	PF04998.17	2.2e-101	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	1	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	2	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	3	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	4	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	5	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	6	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	7	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	8	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	9	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	10	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	11	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	12	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	13	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	14	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	15	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	16	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	17	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	18	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	19	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	20	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	21	22
ENSXCOP00000002261	RNA_pol_Rpb1_R	PF05001.13	2.7e-22	22	22
ENSXCOP00000002261	RNA_pol_Rpb1_4	PF05000.17	9e-38	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_2	PF00623.20	7.1e-75	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_3	PF04983.18	2e-50	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_1	PF04997.12	8e-109	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_7	PF04990.12	4.8e-55	1	1
ENSXCOP00000002261	RNA_pol_Rpb1_6	PF04992.14	3.6e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000002293	-	5367	-	ENSXCOP00000002261	1788 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000001804's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000001804's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000001804	polr2a	99	95.691	ENSAPOG00000006552	polr2a	82	96.216	Acanthochromis_polyacanthus
ENSXCOG00000001804	polr2a	94	92.007	ENSAMEG00000016265	-	90	92.105	Ailuropoda_melanoleuca
ENSXCOG00000001804	polr2a	100	97.917	ENSACIG00000015982	polr2a	96	97.917	Amphilophus_citrinellus
ENSXCOG00000001804	polr2a	100	94.629	ENSAOCG00000004255	polr2a	99	97.640	Amphiprion_ocellaris
ENSXCOG00000001804	polr2a	100	98.086	ENSAPEG00000012623	polr2a	96	98.086	Amphiprion_percula
ENSXCOG00000001804	polr2a	100	97.523	ENSATEG00000019644	polr2a	96	97.523	Anabas_testudineus
ENSXCOG00000001804	polr2a	94	92.422	ENSACAG00000014561	POLR2A	93	92.432	Anolis_carolinensis
ENSXCOG00000001804	polr2a	94	94.660	ENSANAG00000020093	-	93	94.667	Aotus_nancymaae
ENSXCOG00000001804	polr2a	100	97.297	ENSACLG00000006735	polr2a	96	97.297	Astatotilapia_calliptera
ENSXCOG00000001804	polr2a	100	96.847	ENSAMXG00000020046	polr2a	96	96.847	Astyanax_mexicanus
ENSXCOG00000001804	polr2a	94	92.365	ENSBTAG00000046765	POLR2A	89	92.374	Bos_taurus
ENSXCOG00000001804	polr2a	99	92.303	ENSCAFG00000016532	POLR2A	96	92.312	Canis_familiaris
ENSXCOG00000001804	polr2a	94	93.897	ENSCAFG00020007929	-	93	93.905	Canis_lupus_dingo
ENSXCOG00000001804	polr2a	94	92.365	ENSCHIG00000027173	-	89	92.374	Capra_hircus
ENSXCOG00000001804	polr2a	94	94.660	ENSTSYG00000012803	-	98	92.105	Carlito_syrichta
ENSXCOG00000001804	polr2a	98	87.730	ENSCAPG00000001882	-	92	92.105	Cavia_aperea
ENSXCOG00000001804	polr2a	99	91.606	ENSCPOG00000014812	-	92	92.105	Cavia_porcellus
ENSXCOG00000001804	polr2a	94	94.660	ENSCCAG00000020938	-	93	94.667	Cebus_capucinus
ENSXCOG00000001804	polr2a	94	93.961	ENSCATG00000013680	-	93	93.968	Cercocebus_atys
ENSXCOG00000001804	polr2a	99	92.074	ENSCLAG00000012196	-	93	94.540	Chinchilla_lanigera
ENSXCOG00000001804	polr2a	94	88.136	ENSCSAG00000011644	-	89	92.105	Chlorocebus_sabaeus
ENSXCOG00000001804	polr2a	99	88.696	ENSCPBG00000012697	POLR2A	99	85.788	Chrysemys_picta_bellii
ENSXCOG00000001804	polr2a	99	75.274	ENSCING00000007884	-	99	75.729	Ciona_intestinalis
ENSXCOG00000001804	polr2a	99	74.954	ENSCSAVG00000008334	-	99	89.764	Ciona_savignyi
ENSXCOG00000001804	polr2a	94	93.077	ENSCANG00000010622	-	93	93.086	Colobus_angolensis_palliatus
ENSXCOG00000001804	polr2a	94	89.383	ENSCGRG00001003538	Polr2a	85	92.105	Cricetulus_griseus_chok1gshd
ENSXCOG00000001804	polr2a	88	90.954	ENSCGRG00000012105	Polr2a	85	90.966	Cricetulus_griseus_crigri
ENSXCOG00000001804	polr2a	94	96.823	ENSCSEG00000002635	polr2a	93	96.823	Cynoglossus_semilaevis
ENSXCOG00000001804	polr2a	100	96.748	ENSCVAG00000005156	polr2a	96	96.196	Cyprinodon_variegatus
ENSXCOG00000001804	polr2a	99	94.544	ENSDARG00000099966	polr2a	90	95.946	Danio_rerio
ENSXCOG00000001804	polr2a	94	88.944	ENSDNOG00000016482	-	89	92.105	Dasypus_novemcinctus
ENSXCOG00000001804	polr2a	94	94.660	ENSDORG00000008667	Polr2a	93	94.667	Dipodomys_ordii
ENSXCOG00000001804	polr2a	99	69.198	FBgn0003277	RpII215	90	74.346	Drosophila_melanogaster
ENSXCOG00000001804	polr2a	93	88.158	ENSETEG00000002540	-	86	87.671	Echinops_telfairi
ENSXCOG00000001804	polr2a	94	85.278	ENSEBUG00000013967	polr2a	86	85.395	Eptatretus_burgeri
ENSXCOG00000001804	polr2a	88	92.626	ENSEASG00005019114	-	90	90.391	Equus_asinus_asinus
ENSXCOG00000001804	polr2a	94	92.365	ENSECAG00000018485	POLR2A	89	92.374	Equus_caballus
ENSXCOG00000001804	polr2a	94	94.393	ENSEEUG00000001154	-	95	94.393	Erinaceus_europaeus
ENSXCOG00000001804	polr2a	88	95.331	ENSELUG00000014284	polr2a	88	95.331	Esox_lucius
ENSXCOG00000001804	polr2a	94	93.880	ENSFDAG00000008287	-	92	93.888	Fukomys_damarensis
ENSXCOG00000001804	polr2a	99	96.472	ENSFHEG00000001768	polr2a	98	95.921	Fundulus_heteroclitus
ENSXCOG00000001804	polr2a	99	90.843	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSXCOG00000001804	polr2a	100	94.821	ENSGAFG00000005389	polr2a	100	96.980	Gambusia_affinis
ENSXCOG00000001804	polr2a	99	90.659	ENSGACG00000019366	polr2a	100	90.491	Gasterosteus_aculeatus
ENSXCOG00000001804	polr2a	99	91.804	ENSGGOG00000014800	-	96	92.995	Gorilla_gorilla
ENSXCOG00000001804	polr2a	99	97.297	ENSHBUG00000018937	polr2a	96	97.297	Haplochromis_burtoni
ENSXCOG00000001804	polr2a	94	94.596	ENSHGLG00000012381	POLR2A	93	94.603	Heterocephalus_glaber_female
ENSXCOG00000001804	polr2a	94	94.596	ENSHGLG00100014843	POLR2A	93	94.603	Heterocephalus_glaber_male
ENSXCOG00000001804	polr2a	95	95.285	ENSHCOG00000011874	polr2a	90	95.285	Hippocampus_comes
ENSXCOG00000001804	polr2a	95	96.887	ENSIPUG00000002613	Polr2a	93	96.887	Ictalurus_punctatus
ENSXCOG00000001804	polr2a	94	94.660	ENSSTOG00000001304	-	93	94.667	Ictidomys_tridecemlineatus
ENSXCOG00000001804	polr2a	94	94.660	ENSJJAG00000013049	Polr2a	93	94.667	Jaculus_jaculus
ENSXCOG00000001804	polr2a	88	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSXCOG00000001804	polr2a	99	97.466	ENSLBEG00000027652	polr2a	96	97.466	Labrus_bergylta
ENSXCOG00000001804	polr2a	98	83.238	ENSLACG00000012071	POLR2A	88	90.226	Latimeria_chalumnae
ENSXCOG00000001804	polr2a	97	91.732	ENSLOCG00000013863	polr2a	93	93.979	Lepisosteus_oculatus
ENSXCOG00000001804	polr2a	99	89.396	ENSLAFG00000008626	-	93	92.374	Loxodonta_africana
ENSXCOG00000001804	polr2a	55	93.258	ENSMFAG00000007042	-	99	93.258	Macaca_fascicularis
ENSXCOG00000001804	polr2a	94	94.660	ENSMMUG00000023620	-	93	94.667	Macaca_mulatta
ENSXCOG00000001804	polr2a	94	94.215	ENSMNEG00000040407	-	92	94.222	Macaca_nemestrina
ENSXCOG00000001804	polr2a	98	90.078	ENSMLEG00000030263	-	99	93.258	Mandrillus_leucophaeus
ENSXCOG00000001804	polr2a	100	95.480	ENSMAMG00000003351	polr2a	92	95.946	Mastacembelus_armatus
ENSXCOG00000001804	polr2a	95	96.696	ENSMZEG00005021429	polr2a	93	96.696	Maylandia_zebra
ENSXCOG00000001804	polr2a	55	94.088	ENSMAUG00000021055	-	99	94.088	Mesocricetus_auratus
ENSXCOG00000001804	polr2a	94	93.710	ENSMICG00000013372	-	98	93.654	Microcebus_murinus
ENSXCOG00000001804	polr2a	94	92.195	ENSMOCG00000018279	Polr2a	87	92.205	Microtus_ochrogaster
ENSXCOG00000001804	polr2a	98	95.099	ENSMMOG00000012515	polr2a	90	95.099	Mola_mola
ENSXCOG00000001804	polr2a	94	92.117	ENSMODG00000007009	-	93	92.126	Monodelphis_domestica
ENSXCOG00000001804	polr2a	100	95.526	ENSMALG00000008716	polr2a	100	95.526	Monopterus_albus
ENSXCOG00000001804	polr2a	94	94.660	MGP_CAROLIEiJ_G0016587	Polr2a	93	94.667	Mus_caroli
ENSXCOG00000001804	polr2a	94	94.660	ENSMUSG00000005198	Polr2a	93	94.667	Mus_musculus
ENSXCOG00000001804	polr2a	94	90.235	MGP_PahariEiJ_G0017718	Polr2a	89	92.105	Mus_pahari
ENSXCOG00000001804	polr2a	94	94.660	MGP_SPRETEiJ_G0017423	Polr2a	93	94.667	Mus_spretus
ENSXCOG00000001804	polr2a	94	92.241	ENSMPUG00000009648	-	89	92.250	Mustela_putorius_furo
ENSXCOG00000001804	polr2a	94	91.754	ENSMLUG00000009088	-	90	92.105	Myotis_lucifugus
ENSXCOG00000001804	polr2a	94	94.660	ENSNGAG00000002543	Polr2a	93	94.667	Nannospalax_galili
ENSXCOG00000001804	polr2a	100	97.466	ENSNBRG00000002005	polr2a	96	97.466	Neolamprologus_brichardi
ENSXCOG00000001804	polr2a	94	94.660	ENSNLEG00000009460	-	93	94.667	Nomascus_leucogenys
ENSXCOG00000001804	polr2a	96	95.316	ENSMEUG00000008611	-	95	85.407	Notamacropus_eugenii
ENSXCOG00000001804	polr2a	86	92.040	ENSOPRG00000015116	-	99	91.346	Ochotona_princeps
ENSXCOG00000001804	polr2a	94	93.063	ENSODEG00000017674	-	92	92.105	Octodon_degus
ENSXCOG00000001804	polr2a	100	95.480	ENSONIG00000009231	polr2a	90	95.946	Oreochromis_niloticus
ENSXCOG00000001804	polr2a	52	93.991	ENSOANG00000003303	-	98	93.991	Ornithorhynchus_anatinus
ENSXCOG00000001804	polr2a	99	91.171	ENSOCUG00000017929	-	97	91.631	Oryctolagus_cuniculus
ENSXCOG00000001804	polr2a	100	97.804	ENSORLG00000006431	polr2a	96	97.804	Oryzias_latipes
ENSXCOG00000001804	polr2a	100	97.804	ENSORLG00020010235	polr2a	96	97.804	Oryzias_latipes_hni
ENSXCOG00000001804	polr2a	100	97.691	ENSORLG00015007075	polr2a	96	97.691	Oryzias_latipes_hsok
ENSXCOG00000001804	polr2a	99	95.893	ENSOMEG00000010713	polr2a	99	98.254	Oryzias_melastigma
ENSXCOG00000001804	polr2a	94	92.365	ENSOGAG00000033608	-	89	92.374	Otolemur_garnettii
ENSXCOG00000001804	polr2a	88	92.365	ENSOARG00000013874	-	85	92.374	Ovis_aries
ENSXCOG00000001804	polr2a	94	94.562	ENSPPAG00000043734	-	86	94.159	Pan_paniscus
ENSXCOG00000001804	polr2a	94	94.660	ENSPTRG00000008691	POLR2A	93	94.667	Pan_troglodytes
ENSXCOG00000001804	polr2a	94	93.961	ENSPANG00000024099	-	93	93.968	Papio_anubis
ENSXCOG00000001804	polr2a	83	95.564	ENSPKIG00000005727	polr2a	85	87.500	Paramormyrops_kingsleyae
ENSXCOG00000001804	polr2a	99	90.583	ENSPSIG00000014006	POLR2A	100	88.545	Pelodiscus_sinensis
ENSXCOG00000001804	polr2a	100	97.447	ENSPMGG00000019734	polr2a	100	97.447	Periophthalmus_magnuspinnatus
ENSXCOG00000001804	polr2a	94	94.660	ENSPEMG00000012521	Polr2a	93	94.667	Peromyscus_maniculatus_bairdii
ENSXCOG00000001804	polr2a	88	92.122	ENSPCIG00000028851	-	82	91.501	Phascolarctos_cinereus
ENSXCOG00000001804	polr2a	99	97.023	ENSPFOG00000007890	polr2a	95	96.472	Poecilia_formosa
ENSXCOG00000001804	polr2a	99	97.243	ENSPLAG00000007399	polr2a	95	97.243	Poecilia_latipinna
ENSXCOG00000001804	polr2a	99	99.155	ENSPMEG00000002071	polr2a	95	99.155	Poecilia_mexicana
ENSXCOG00000001804	polr2a	100	99.099	ENSPREG00000013122	polr2a	96	99.099	Poecilia_reticulata
ENSXCOG00000001804	polr2a	94	92.365	ENSPPYG00000007924	-	97	92.105	Pongo_abelii
ENSXCOG00000001804	polr2a	85	94.737	ENSPCAG00000006951	-	84	94.737	Procavia_capensis
ENSXCOG00000001804	polr2a	94	94.660	ENSPCOG00000025260	-	93	94.667	Propithecus_coquereli
ENSXCOG00000001804	polr2a	94	92.055	ENSPVAG00000005069	-	89	92.105	Pteropus_vampyrus
ENSXCOG00000001804	polr2a	100	91.102	ENSPNYG00000022340	polr2a	98	95.946	Pundamilia_nyererei
ENSXCOG00000001804	polr2a	95	95.223	ENSPNAG00000011237	polr2a	89	95.946	Pygocentrus_nattereri
ENSXCOG00000001804	polr2a	94	92.303	ENSRNOG00000028834	Polr2a	89	92.312	Rattus_norvegicus
ENSXCOG00000001804	polr2a	94	94.660	ENSRBIG00000002471	-	90	92.184	Rhinopithecus_bieti
ENSXCOG00000001804	polr2a	94	92.365	ENSRROG00000029583	-	90	92.374	Rhinopithecus_roxellana
ENSXCOG00000001804	polr2a	90	50.494	YDL140C	RPO21	91	50.959	Saccharomyces_cerevisiae
ENSXCOG00000001804	polr2a	94	94.660	ENSSBOG00000000808	-	93	94.667	Saimiri_boliviensis_boliviensis
ENSXCOG00000001804	polr2a	94	92.117	ENSSHAG00000002858	-	91	92.126	Sarcophilus_harrisii
ENSXCOG00000001804	polr2a	99	97.072	ENSSFOG00015023275	polr2a	96	97.072	Scleropages_formosus
ENSXCOG00000001804	polr2a	95	95.347	ENSSMAG00000009137	polr2a	93	95.946	Scophthalmus_maximus
ENSXCOG00000001804	polr2a	100	97.691	ENSSDUG00000020466	polr2a	96	97.691	Seriola_dumerili
ENSXCOG00000001804	polr2a	100	97.635	ENSSLDG00000020613	polr2a	96	97.635	Seriola_lalandi_dorsalis
ENSXCOG00000001804	polr2a	99	88.158	ENSSARG00000005875	-	99	88.290	Sorex_araneus
ENSXCOG00000001804	polr2a	100	96.365	ENSSPAG00000016741	polr2a	95	95.769	Stegastes_partitus
ENSXCOG00000001804	polr2a	94	91.434	ENSSSCG00000028278	-	89	92.105	Sus_scrofa
ENSXCOG00000001804	polr2a	98	90.130	ENSTRUG00000012320	polr2a	81	89.385	Takifugu_rubripes
ENSXCOG00000001804	polr2a	97	94.355	ENSTNIG00000010136	polr2a	97	92.560	Tetraodon_nigroviridis
ENSXCOG00000001804	polr2a	74	94.350	ENSTBEG00000013294	-	58	94.350	Tupaia_belangeri
ENSXCOG00000001804	polr2a	94	90.689	ENSTTRG00000014273	-	89	92.105	Tursiops_truncatus
ENSXCOG00000001804	polr2a	93	91.950	ENSUAMG00000014866	-	88	94.237	Ursus_americanus
ENSXCOG00000001804	polr2a	86	89.944	ENSUMAG00000015732	-	90	92.105	Ursus_maritimus
ENSXCOG00000001804	polr2a	57	98.370	ENSVPAG00000008842	-	66	98.370	Vicugna_pacos
ENSXCOG00000001804	polr2a	94	92.303	ENSVVUG00000027878	-	87	92.312	Vulpes_vulpes
ENSXCOG00000001804	polr2a	93	91.945	ENSXETG00000012465	polr2a	89	91.955	Xenopus_tropicalis
ENSXCOG00000001804	polr2a	100	99.268	ENSXMAG00000015687	polr2a	96	99.268	Xiphophorus_maculatus