EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000002572 (Gene tree)
Gene ID: -
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 4580 bases
Position: chrKQ557224.1:15135726-15140305
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000003266	LSM	PF01423.22	4.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000003304	-	309	-	ENSXCOP00000003266	102 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000002572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000002572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000002572	lsm7	67	38.571	ENSXCOG00000000088	snrpg	81	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000002572	lsm7	100	95.098	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSXCOG00000002572	lsm7	93	97.895	ENSAPOG00000015573	lsm7	82	97.895	Acanthochromis_polyacanthus
ENSXCOG00000002572	lsm7	99	95.050	ENSAMEG00000005484	LSM7	98	95.050	Ailuropoda_melanoleuca
ENSXCOG00000002572	lsm7	96	96.939	ENSACIG00000006498	lsm7	78	96.939	Amphilophus_citrinellus
ENSXCOG00000002572	lsm7	99	99.010	ENSAOCG00000001077	lsm7	92	99.010	Amphiprion_ocellaris
ENSXCOG00000002572	lsm7	99	99.010	ENSAPEG00000024447	lsm7	92	99.010	Amphiprion_percula
ENSXCOG00000002572	lsm7	100	98.039	ENSAPEG00000000694	lsm7	99	98.039	Amphiprion_percula
ENSXCOG00000002572	lsm7	100	98.039	ENSATEG00000008557	lsm7	99	98.039	Anabas_testudineus
ENSXCOG00000002572	lsm7	100	95.098	ENSANAG00000037196	-	99	95.098	Aotus_nancymaae
ENSXCOG00000002572	lsm7	100	86.275	ENSANAG00000022222	-	99	86.275	Aotus_nancymaae
ENSXCOG00000002572	lsm7	100	97.059	ENSACLG00000021021	lsm7	99	97.059	Astatotilapia_calliptera
ENSXCOG00000002572	lsm7	100	96.078	ENSAMXG00000037622	lsm7	99	96.078	Astyanax_mexicanus
ENSXCOG00000002572	lsm7	100	95.098	ENSBTAG00000004521	LSM7	99	95.098	Bos_taurus
ENSXCOG00000002572	lsm7	98	58.000	WBGene00003081	lsm-7	88	57.609	Caenorhabditis_elegans
ENSXCOG00000002572	lsm7	69	77.143	ENSCJAG00000039713	-	67	94.545	Callithrix_jacchus
ENSXCOG00000002572	lsm7	99	95.050	ENSCAFG00000019409	LSM7	98	95.050	Canis_familiaris
ENSXCOG00000002572	lsm7	99	95.050	ENSCAFG00020018168	LSM7	74	96.000	Canis_lupus_dingo
ENSXCOG00000002572	lsm7	99	96.040	ENSCHIG00000023663	LSM7	98	96.040	Capra_hircus
ENSXCOG00000002572	lsm7	70	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSXCOG00000002572	lsm7	100	95.098	ENSCPOG00000014025	LSM7	100	96.040	Cavia_porcellus
ENSXCOG00000002572	lsm7	99	96.040	ENSCCAG00000035456	LSM7	99	96.040	Cebus_capucinus
ENSXCOG00000002572	lsm7	100	95.098	ENSCATG00000023543	LSM7	99	95.098	Cercocebus_atys
ENSXCOG00000002572	lsm7	100	95.098	ENSCLAG00000011635	LSM7	99	95.098	Chinchilla_lanigera
ENSXCOG00000002572	lsm7	100	95.098	ENSCSAG00000011599	LSM7	99	95.098	Chlorocebus_sabaeus
ENSXCOG00000002572	lsm7	71	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSXCOG00000002572	lsm7	94	79.167	ENSCING00000022134	-	91	80.000	Ciona_intestinalis
ENSXCOG00000002572	lsm7	100	95.098	ENSCANG00000035525	LSM7	99	95.098	Colobus_angolensis_palliatus
ENSXCOG00000002572	lsm7	88	85.556	ENSCGRG00001016005	-	92	85.556	Cricetulus_griseus_chok1gshd
ENSXCOG00000002572	lsm7	100	94.118	ENSCGRG00001000807	-	99	94.118	Cricetulus_griseus_chok1gshd
ENSXCOG00000002572	lsm7	88	85.556	ENSCGRG00000006821	-	92	85.556	Cricetulus_griseus_crigri
ENSXCOG00000002572	lsm7	99	95.050	ENSCGRG00000014355	-	97	95.050	Cricetulus_griseus_crigri
ENSXCOG00000002572	lsm7	100	98.039	ENSCSEG00000014900	lsm7	86	99.010	Cynoglossus_semilaevis
ENSXCOG00000002572	lsm7	100	99.020	ENSCVAG00000021091	lsm7	94	99.020	Cyprinodon_variegatus
ENSXCOG00000002572	lsm7	100	96.078	ENSDARG00000058328	lsm7	99	96.078	Danio_rerio
ENSXCOG00000002572	lsm7	100	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSXCOG00000002572	lsm7	95	73.469	FBgn0261068	LSm7	83	73.626	Drosophila_melanogaster
ENSXCOG00000002572	lsm7	99	93.069	ENSETEG00000012788	LSM7	99	93.069	Echinops_telfairi
ENSXCOG00000002572	lsm7	99	85.149	ENSEBUG00000016992	lsm7	89	87.097	Eptatretus_burgeri
ENSXCOG00000002572	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSXCOG00000002572	lsm7	100	91.176	ENSECAG00000001440	LSM7	65	91.176	Equus_caballus
ENSXCOG00000002572	lsm7	100	94.118	ENSFCAG00000003445	LSM7	99	94.118	Felis_catus
ENSXCOG00000002572	lsm7	99	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSXCOG00000002572	lsm7	94	95.833	ENSFDAG00000007661	LSM7	100	95.833	Fukomys_damarensis
ENSXCOG00000002572	lsm7	99	100.000	ENSFHEG00000006349	lsm7	90	100.000	Fundulus_heteroclitus
ENSXCOG00000002572	lsm7	99	97.030	ENSGMOG00000013320	lsm7	98	97.030	Gadus_morhua
ENSXCOG00000002572	lsm7	100	99.020	ENSGAFG00000013902	lsm7	99	99.020	Gambusia_affinis
ENSXCOG00000002572	lsm7	99	98.020	ENSGACG00000010390	lsm7	98	98.020	Gasterosteus_aculeatus
ENSXCOG00000002572	lsm7	100	95.098	ENSGGOG00000010172	LSM7	99	95.098	Gorilla_gorilla
ENSXCOG00000002572	lsm7	100	97.059	ENSHBUG00000004616	lsm7	99	97.059	Haplochromis_burtoni
ENSXCOG00000002572	lsm7	100	95.098	ENSHGLG00000010587	LSM7	99	95.098	Heterocephalus_glaber_female
ENSXCOG00000002572	lsm7	100	95.098	ENSHGLG00100000852	LSM7	99	95.098	Heterocephalus_glaber_male
ENSXCOG00000002572	lsm7	99	98.020	ENSHCOG00000020252	lsm7	100	98.020	Hippocampus_comes
ENSXCOG00000002572	lsm7	100	96.078	ENSIPUG00000024724	lsm7	99	96.078	Ictalurus_punctatus
ENSXCOG00000002572	lsm7	99	96.040	ENSSTOG00000028372	LSM7	99	96.040	Ictidomys_tridecemlineatus
ENSXCOG00000002572	lsm7	98	96.000	ENSJJAG00000001936	Lsm7	97	96.000	Jaculus_jaculus
ENSXCOG00000002572	lsm7	100	99.020	ENSKMAG00000022151	lsm7	99	99.020	Kryptolebias_marmoratus
ENSXCOG00000002572	lsm7	100	98.039	ENSLBEG00000005203	lsm7	99	98.039	Labrus_bergylta
ENSXCOG00000002572	lsm7	99	97.030	ENSLACG00000015700	LSM7	98	97.030	Latimeria_chalumnae
ENSXCOG00000002572	lsm7	99	98.020	ENSLOCG00000004356	lsm7	98	98.020	Lepisosteus_oculatus
ENSXCOG00000002572	lsm7	99	96.040	ENSLAFG00000029302	LSM7	98	96.040	Loxodonta_africana
ENSXCOG00000002572	lsm7	100	95.098	ENSMFAG00000044572	LSM7	99	95.098	Macaca_fascicularis
ENSXCOG00000002572	lsm7	100	95.098	ENSMMUG00000000452	LSM7	99	96.040	Macaca_mulatta
ENSXCOG00000002572	lsm7	100	95.098	ENSMNEG00000004393	LSM7	99	95.098	Macaca_nemestrina
ENSXCOG00000002572	lsm7	100	95.098	ENSMLEG00000030852	LSM7	100	96.040	Mandrillus_leucophaeus
ENSXCOG00000002572	lsm7	100	97.059	ENSMAMG00000005410	lsm7	99	97.059	Mastacembelus_armatus
ENSXCOG00000002572	lsm7	100	97.059	ENSMZEG00005028055	lsm7	99	97.059	Maylandia_zebra
ENSXCOG00000002572	lsm7	100	97.059	ENSMGAG00000000750	LSM7	88	97.059	Meleagris_gallopavo
ENSXCOG00000002572	lsm7	100	94.118	ENSMAUG00000009276	Lsm7	99	94.118	Mesocricetus_auratus
ENSXCOG00000002572	lsm7	100	95.098	ENSMICG00000028619	-	99	95.098	Microcebus_murinus
ENSXCOG00000002572	lsm7	100	95.098	ENSMICG00000009988	-	99	95.098	Microcebus_murinus
ENSXCOG00000002572	lsm7	100	94.118	ENSMOCG00000016925	Lsm7	99	94.118	Microtus_ochrogaster
ENSXCOG00000002572	lsm7	100	98.039	ENSMMOG00000019645	lsm7	97	98.039	Mola_mola
ENSXCOG00000002572	lsm7	100	96.078	ENSMODG00000004722	LSM7	99	96.078	Monodelphis_domestica
ENSXCOG00000002572	lsm7	100	97.059	ENSMALG00000014511	lsm7	78	97.059	Monopterus_albus
ENSXCOG00000002572	lsm7	99	94.059	MGP_CAROLIEiJ_G0015607	Lsm7	98	94.059	Mus_caroli
ENSXCOG00000002572	lsm7	99	94.059	ENSMUSG00000035215	Lsm7	98	94.059	Mus_musculus
ENSXCOG00000002572	lsm7	99	94.059	MGP_PahariEiJ_G0031020	Lsm7	98	94.059	Mus_pahari
ENSXCOG00000002572	lsm7	99	94.059	MGP_SPRETEiJ_G0016425	Lsm7	98	94.059	Mus_spretus
ENSXCOG00000002572	lsm7	99	95.050	ENSMLUG00000013097	-	98	95.050	Myotis_lucifugus
ENSXCOG00000002572	lsm7	99	89.109	ENSMLUG00000024002	-	85	90.217	Myotis_lucifugus
ENSXCOG00000002572	lsm7	100	93.137	ENSNGAG00000021637	Lsm7	99	93.137	Nannospalax_galili
ENSXCOG00000002572	lsm7	99	98.020	ENSNBRG00000001237	-	81	98.020	Neolamprologus_brichardi
ENSXCOG00000002572	lsm7	99	98.020	ENSNBRG00000015770	lsm7	87	98.020	Neolamprologus_brichardi
ENSXCOG00000002572	lsm7	100	95.098	ENSNLEG00000002265	LSM7	99	95.098	Nomascus_leucogenys
ENSXCOG00000002572	lsm7	100	95.098	ENSODEG00000013590	-	99	95.098	Octodon_degus
ENSXCOG00000002572	lsm7	100	88.235	ENSODEG00000018769	-	99	88.235	Octodon_degus
ENSXCOG00000002572	lsm7	100	74.510	ENSODEG00000008190	-	99	74.510	Octodon_degus
ENSXCOG00000002572	lsm7	100	97.059	ENSONIG00000001801	lsm7	88	97.059	Oreochromis_niloticus
ENSXCOG00000002572	lsm7	100	98.039	ENSORLG00000023951	lsm7	99	98.039	Oryzias_latipes
ENSXCOG00000002572	lsm7	100	98.039	ENSORLG00020022226	lsm7	99	98.039	Oryzias_latipes_hni
ENSXCOG00000002572	lsm7	99	99.010	ENSORLG00015020044	lsm7	94	99.010	Oryzias_latipes_hsok
ENSXCOG00000002572	lsm7	100	98.039	ENSOMEG00000012806	lsm7	99	98.039	Oryzias_melastigma
ENSXCOG00000002572	lsm7	99	94.059	ENSOGAG00000000144	-	99	94.059	Otolemur_garnettii
ENSXCOG00000002572	lsm7	100	83.333	ENSOGAG00000024373	-	91	83.871	Otolemur_garnettii
ENSXCOG00000002572	lsm7	99	96.040	ENSOARG00000014013	LSM7	98	96.040	Ovis_aries
ENSXCOG00000002572	lsm7	100	95.098	ENSPPAG00000026500	LSM7	99	95.098	Pan_paniscus
ENSXCOG00000002572	lsm7	100	94.118	ENSPPRG00000008624	LSM7	99	94.118	Panthera_pardus
ENSXCOG00000002572	lsm7	99	95.050	ENSPTIG00000016252	LSM7	98	95.050	Panthera_tigris_altaica
ENSXCOG00000002572	lsm7	100	95.098	ENSPTRG00000010233	LSM7	99	95.098	Pan_troglodytes
ENSXCOG00000002572	lsm7	100	95.098	ENSPANG00000020668	LSM7	99	95.098	Papio_anubis
ENSXCOG00000002572	lsm7	100	98.039	ENSPKIG00000011325	lsm7	99	98.039	Paramormyrops_kingsleyae
ENSXCOG00000002572	lsm7	99	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSXCOG00000002572	lsm7	100	98.039	ENSPMGG00000006498	lsm7	99	98.039	Periophthalmus_magnuspinnatus
ENSXCOG00000002572	lsm7	100	96.078	ENSPCIG00000030454	LSM7	99	97.030	Phascolarctos_cinereus
ENSXCOG00000002572	lsm7	99	99.010	ENSPFOG00000012467	lsm7	89	99.010	Poecilia_formosa
ENSXCOG00000002572	lsm7	100	99.020	ENSPLAG00000000252	lsm7	94	99.020	Poecilia_latipinna
ENSXCOG00000002572	lsm7	100	99.020	ENSPMEG00000000587	lsm7	94	99.020	Poecilia_mexicana
ENSXCOG00000002572	lsm7	77	77.500	ENSPREG00000016718	lsm7	64	77.500	Poecilia_reticulata
ENSXCOG00000002572	lsm7	72	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSXCOG00000002572	lsm7	100	95.098	ENSPCOG00000017177	LSM7	99	96.040	Propithecus_coquereli
ENSXCOG00000002572	lsm7	100	97.059	ENSPNYG00000006938	lsm7	99	97.059	Pundamilia_nyererei
ENSXCOG00000002572	lsm7	100	96.078	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSXCOG00000002572	lsm7	99	95.050	ENSRNOG00000019552	Lsm7	98	95.050	Rattus_norvegicus
ENSXCOG00000002572	lsm7	100	95.098	ENSRBIG00000035978	LSM7	99	95.098	Rhinopithecus_bieti
ENSXCOG00000002572	lsm7	100	95.098	ENSRROG00000034044	LSM7	99	95.098	Rhinopithecus_roxellana
ENSXCOG00000002572	lsm7	84	48.315	YNL147W	-	75	47.674	Saccharomyces_cerevisiae
ENSXCOG00000002572	lsm7	100	95.098	ENSSBOG00000034899	LSM7	99	95.098	Saimiri_boliviensis_boliviensis
ENSXCOG00000002572	lsm7	100	96.078	ENSSFOG00015006728	lsm7	99	96.078	Scleropages_formosus
ENSXCOG00000002572	lsm7	99	99.010	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSXCOG00000002572	lsm7	100	98.039	ENSSDUG00000001863	lsm7	99	98.039	Seriola_dumerili
ENSXCOG00000002572	lsm7	100	98.039	ENSSLDG00000016339	lsm7	99	98.039	Seriola_lalandi_dorsalis
ENSXCOG00000002572	lsm7	100	98.039	ENSSPAG00000015221	lsm7	99	98.039	Stegastes_partitus
ENSXCOG00000002572	lsm7	99	96.040	ENSSSCG00000013463	LSM7	99	96.040	Sus_scrofa
ENSXCOG00000002572	lsm7	99	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSXCOG00000002572	lsm7	100	97.059	ENSTRUG00000022913	lsm7	99	97.059	Takifugu_rubripes
ENSXCOG00000002572	lsm7	100	97.059	ENSTNIG00000015525	lsm7	99	97.059	Tetraodon_nigroviridis
ENSXCOG00000002572	lsm7	69	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSXCOG00000002572	lsm7	99	95.050	ENSUAMG00000000912	LSM7	84	95.050	Ursus_americanus
ENSXCOG00000002572	lsm7	99	95.050	ENSUMAG00000006556	LSM7	79	95.050	Ursus_maritimus
ENSXCOG00000002572	lsm7	70	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSXCOG00000002572	lsm7	99	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSXCOG00000002572	lsm7	100	99.020	ENSXMAG00000018630	lsm7	99	99.020	Xiphophorus_maculatus