EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000002836 (Gene tree)
Gene ID: -
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR domain containing 12b
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 3315 bases
Position: chrKQ557223.1:12319329-12322643
Accession: ZDB-GENE-041114-172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000003594	zf-C2H2	PF00096.26	7.1e-13	1	2
ENSXCOP00000003594	zf-C2H2	PF00096.26	7.1e-13	2	2
ENSXCOP00000003594	zf-met	PF12874.7	6.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000003633	-	1122	-	ENSXCOP00000003594	373 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000002836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000002836's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000002836	prdm12b	65	42.105	ENSXCOG00000008567	prdm5	93	42.105
ENSXCOG00000002836	prdm12b	57	43.836	ENSXCOG00000007981	-	82	45.614
ENSXCOG00000002836	prdm12b	51	45.312	ENSXCOG00000013870	-	65	43.284

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000002836	prdm12b	91	82.596	ENSG00000130711	PRDM12	100	77.540	Homo_sapiens
ENSXCOG00000002836	prdm12b	99	88.860	ENSAPOG00000016051	prdm12b	100	88.601	Acanthochromis_polyacanthus
ENSXCOG00000002836	prdm12b	99	65.435	ENSAPOG00000018234	-	100	65.435	Acanthochromis_polyacanthus
ENSXCOG00000002836	prdm12b	88	82.727	ENSAMEG00000016234	PRDM12	99	83.030	Ailuropoda_melanoleuca
ENSXCOG00000002836	prdm12b	99	89.710	ENSACIG00000019578	prdm12b	100	89.446	Amphilophus_citrinellus
ENSXCOG00000002836	prdm12b	99	78.608	ENSACIG00000005193	-	100	78.093	Amphilophus_citrinellus
ENSXCOG00000002836	prdm12b	99	90.237	ENSAOCG00000015040	prdm12b	100	89.974	Amphiprion_ocellaris
ENSXCOG00000002836	prdm12b	100	73.590	ENSAPEG00000022849	-	100	73.590	Amphiprion_percula
ENSXCOG00000002836	prdm12b	99	90.957	ENSAPEG00000015092	prdm12b	100	91.223	Amphiprion_percula
ENSXCOG00000002836	prdm12b	99	78.961	ENSATEG00000014595	-	98	83.086	Anabas_testudineus
ENSXCOG00000002836	prdm12b	93	81.268	ENSANAG00000020616	PRDM12	97	83.036	Aotus_nancymaae
ENSXCOG00000002836	prdm12b	99	87.701	ENSACLG00000011876	prdm12b	100	86.364	Astatotilapia_calliptera
ENSXCOG00000002836	prdm12b	99	77.078	ENSACLG00000007631	-	100	76.515	Astatotilapia_calliptera
ENSXCOG00000002836	prdm12b	99	81.183	ENSAMXG00000008540	PRDM12	100	81.183	Astyanax_mexicanus
ENSXCOG00000002836	prdm12b	99	82.620	ENSAMXG00000033665	prdm12b	100	82.400	Astyanax_mexicanus
ENSXCOG00000002836	prdm12b	91	82.596	ENSBTAG00000023797	PRDM12	100	77.748	Bos_taurus
ENSXCOG00000002836	prdm12b	91	82.596	ENSCJAG00000020540	PRDM12	100	77.480	Callithrix_jacchus
ENSXCOG00000002836	prdm12b	79	83.108	ENSCAFG00000023076	PRDM12	99	77.576	Canis_familiaris
ENSXCOG00000002836	prdm12b	91	82.596	ENSCAFG00020024046	PRDM12	100	77.748	Canis_lupus_dingo
ENSXCOG00000002836	prdm12b	91	82.596	ENSCHIG00000025005	PRDM12	100	77.748	Capra_hircus
ENSXCOG00000002836	prdm12b	86	82.812	ENSCPOG00000005901	PRDM12	95	82.812	Cavia_porcellus
ENSXCOG00000002836	prdm12b	91	82.596	ENSCCAG00000037485	PRDM12	100	77.480	Cebus_capucinus
ENSXCOG00000002836	prdm12b	91	82.596	ENSCATG00000020327	PRDM12	100	77.480	Cercocebus_atys
ENSXCOG00000002836	prdm12b	90	82.440	ENSCLAG00000005499	PRDM12	90	82.440	Chinchilla_lanigera
ENSXCOG00000002836	prdm12b	91	82.596	ENSCSAG00000014756	PRDM12	100	77.480	Chlorocebus_sabaeus
ENSXCOG00000002836	prdm12b	100	79.521	ENSCPBG00000022628	PRDM12	100	78.457	Chrysemys_picta_bellii
ENSXCOG00000002836	prdm12b	91	82.596	ENSCGRG00001015005	Prdm12	100	77.748	Cricetulus_griseus_chok1gshd
ENSXCOG00000002836	prdm12b	99	94.933	ENSCVAG00000017166	prdm12b	100	93.600	Cyprinodon_variegatus
ENSXCOG00000002836	prdm12b	99	78.462	ENSCVAG00000000944	-	100	77.949	Cyprinodon_variegatus
ENSXCOG00000002836	prdm12b	99	82.842	ENSDARG00000007430	prdm12b	100	82.574	Danio_rerio
ENSXCOG00000002836	prdm12b	90	82.301	ENSDNOG00000042302	PRDM12	99	77.748	Dasypus_novemcinctus
ENSXCOG00000002836	prdm12b	84	65.385	ENSEBUG00000016780	prdm12b	74	66.864	Eptatretus_burgeri
ENSXCOG00000002836	prdm12b	95	80.453	ENSEASG00005008472	PRDM12	91	83.036	Equus_asinus_asinus
ENSXCOG00000002836	prdm12b	95	80.453	ENSECAG00000005933	PRDM12	91	83.036	Equus_caballus
ENSXCOG00000002836	prdm12b	99	81.867	ENSELUG00000009905	prdm12b	100	81.600	Esox_lucius
ENSXCOG00000002836	prdm12b	99	81.233	ENSELUG00000013674	PRDM12	100	81.890	Esox_lucius
ENSXCOG00000002836	prdm12b	91	82.596	ENSFCAG00000043086	PRDM12	100	77.748	Felis_catus
ENSXCOG00000002836	prdm12b	100	80.319	ENSFALG00000001445	PRDM12	89	79.255	Ficedula_albicollis
ENSXCOG00000002836	prdm12b	99	93.915	ENSFHEG00000003944	prdm12b	100	92.593	Fundulus_heteroclitus
ENSXCOG00000002836	prdm12b	99	76.633	ENSFHEG00000007746	-	100	76.590	Fundulus_heteroclitus
ENSXCOG00000002836	prdm12b	99	82.895	ENSGMOG00000011797	prdm12b	100	82.058	Gadus_morhua
ENSXCOG00000002836	prdm12b	100	80.319	ENSGALG00000003895	PRDM12	100	79.255	Gallus_gallus
ENSXCOG00000002836	prdm12b	100	98.933	ENSGAFG00000010827	prdm12b	100	98.933	Gambusia_affinis
ENSXCOG00000002836	prdm12b	100	89.153	ENSGACG00000016713	prdm12b	100	88.564	Gasterosteus_aculeatus
ENSXCOG00000002836	prdm12b	100	79.521	ENSGAGG00000014083	PRDM12	100	78.457	Gopherus_agassizii
ENSXCOG00000002836	prdm12b	91	82.301	ENSGGOG00000010568	PRDM12	100	77.212	Gorilla_gorilla
ENSXCOG00000002836	prdm12b	99	89.390	ENSHBUG00000022878	prdm12b	100	89.655	Haplochromis_burtoni
ENSXCOG00000002836	prdm12b	99	77.078	ENSHBUG00000022537	-	93	76.515	Haplochromis_burtoni
ENSXCOG00000002836	prdm12b	90	82.738	ENSHGLG00000013939	PRDM12	90	82.738	Heterocephalus_glaber_female
ENSXCOG00000002836	prdm12b	89	85.714	ENSHCOG00000003663	prdm12b	100	79.241	Hippocampus_comes
ENSXCOG00000002836	prdm12b	99	72.513	ENSHCOG00000021167	-	100	71.466	Hippocampus_comes
ENSXCOG00000002836	prdm12b	99	83.422	ENSIPUG00000017053	prdm12b	100	83.733	Ictalurus_punctatus
ENSXCOG00000002836	prdm12b	99	78.610	ENSIPUG00000019544	PRDM12	100	78.610	Ictalurus_punctatus
ENSXCOG00000002836	prdm12b	96	79.552	ENSSTOG00000005986	PRDM12	86	83.036	Ictidomys_tridecemlineatus
ENSXCOG00000002836	prdm12b	90	83.036	ENSJJAG00000005424	Prdm12	99	83.036	Jaculus_jaculus
ENSXCOG00000002836	prdm12b	94	78.531	ENSKMAG00000021205	-	93	78.249	Kryptolebias_marmoratus
ENSXCOG00000002836	prdm12b	99	81.436	ENSKMAG00000016921	prdm12b	100	83.911	Kryptolebias_marmoratus
ENSXCOG00000002836	prdm12b	99	89.683	ENSLBEG00000017769	prdm12b	100	88.624	Labrus_bergylta
ENSXCOG00000002836	prdm12b	99	79.003	ENSLBEG00000007776	-	100	79.474	Labrus_bergylta
ENSXCOG00000002836	prdm12b	99	79.412	ENSLACG00000017560	PRDM12	99	78.610	Latimeria_chalumnae
ENSXCOG00000002836	prdm12b	99	82.133	ENSLOCG00000005429	prdm12b	99	82.133	Lepisosteus_oculatus
ENSXCOG00000002836	prdm12b	91	82.891	ENSLAFG00000006979	PRDM12	90	83.333	Loxodonta_africana
ENSXCOG00000002836	prdm12b	91	82.301	ENSMFAG00000040322	PRDM12	90	82.738	Macaca_fascicularis
ENSXCOG00000002836	prdm12b	91	82.596	ENSMNEG00000037234	PRDM12	100	77.480	Macaca_nemestrina
ENSXCOG00000002836	prdm12b	99	74.937	ENSMAMG00000018988	-	100	74.937	Mastacembelus_armatus
ENSXCOG00000002836	prdm12b	99	88.158	ENSMAMG00000013212	prdm12b	100	88.360	Mastacembelus_armatus
ENSXCOG00000002836	prdm12b	99	76.692	ENSMZEG00005000415	PRDM12	100	76.382	Maylandia_zebra
ENSXCOG00000002836	prdm12b	97	81.267	ENSMGAG00000005438	PRDM12	92	85.672	Meleagris_gallopavo
ENSXCOG00000002836	prdm12b	100	77.867	ENSMAUG00000013040	Prdm12	90	82.891	Mesocricetus_auratus
ENSXCOG00000002836	prdm12b	91	82.596	ENSMICG00000015480	PRDM12	91	83.036	Microcebus_murinus
ENSXCOG00000002836	prdm12b	100	76.944	ENSMOCG00000021026	Prdm12	90	83.333	Microtus_ochrogaster
ENSXCOG00000002836	prdm12b	100	79.357	ENSMODG00000012108	PRDM12	100	78.075	Monodelphis_domestica
ENSXCOG00000002836	prdm12b	99	74.801	ENSMALG00000021901	prdm12b	99	74.133	Monopterus_albus
ENSXCOG00000002836	prdm12b	91	82.596	MGP_CAROLIEiJ_G0023414	Prdm12	100	77.748	Mus_caroli
ENSXCOG00000002836	prdm12b	91	82.596	ENSMUSG00000079466	Prdm12	100	77.748	Mus_musculus
ENSXCOG00000002836	prdm12b	91	82.596	MGP_PahariEiJ_G0024871	Prdm12	100	77.748	Mus_pahari
ENSXCOG00000002836	prdm12b	91	82.596	MGP_SPRETEiJ_G0024331	Prdm12	100	77.748	Mus_spretus
ENSXCOG00000002836	prdm12b	89	83.434	ENSNGAG00000018480	Prdm12	93	82.738	Nannospalax_galili
ENSXCOG00000002836	prdm12b	99	73.298	ENSNBRG00000024312	-	100	73.298	Neolamprologus_brichardi
ENSXCOG00000002836	prdm12b	99	88.947	ENSNBRG00000006727	prdm12b	100	88.947	Neolamprologus_brichardi
ENSXCOG00000002836	prdm12b	100	71.046	ENSMEUG00000003828	PRDM12	100	69.786	Notamacropus_eugenii
ENSXCOG00000002836	prdm12b	90	83.036	ENSOPRG00000008680	PRDM12	99	83.036	Ochotona_princeps
ENSXCOG00000002836	prdm12b	94	81.143	ENSODEG00000016282	PRDM12	62	82.738	Octodon_degus
ENSXCOG00000002836	prdm12b	63	76.695	ENSOANG00000001043	PRDM12	100	75.000	Ornithorhynchus_anatinus
ENSXCOG00000002836	prdm12b	82	83.333	ENSOCUG00000008241	PRDM12	96	83.333	Oryctolagus_cuniculus
ENSXCOG00000002836	prdm12b	100	86.198	ENSORLG00000007114	prdm12b	100	85.379	Oryzias_latipes
ENSXCOG00000002836	prdm12b	99	77.436	ENSORLG00000017558	-	100	76.410	Oryzias_latipes
ENSXCOG00000002836	prdm12b	99	76.982	ENSORLG00020013167	-	100	77.494	Oryzias_latipes_hni
ENSXCOG00000002836	prdm12b	100	85.379	ENSORLG00020019565	prdm12b	100	85.640	Oryzias_latipes_hni
ENSXCOG00000002836	prdm12b	100	84.935	ENSORLG00015007621	prdm12b	100	85.379	Oryzias_latipes_hsok
ENSXCOG00000002836	prdm12b	99	77.436	ENSORLG00015003435	-	100	76.410	Oryzias_latipes_hsok
ENSXCOG00000002836	prdm12b	100	85.530	ENSOMEG00000004134	prdm12b	100	86.269	Oryzias_melastigma
ENSXCOG00000002836	prdm12b	99	76.546	ENSOMEG00000007762	-	100	76.804	Oryzias_melastigma
ENSXCOG00000002836	prdm12b	91	82.596	ENSOGAG00000007557	PRDM12	99	83.036	Otolemur_garnettii
ENSXCOG00000002836	prdm12b	79	81.633	ENSPPAG00000031506	-	99	80.333	Pan_paniscus
ENSXCOG00000002836	prdm12b	100	71.925	ENSPPRG00000023024	PRDM12	84	76.855	Panthera_pardus
ENSXCOG00000002836	prdm12b	91	82.596	ENSPTRG00000021475	PRDM12	100	77.480	Pan_troglodytes
ENSXCOG00000002836	prdm12b	91	82.596	ENSPTRG00000043324	-	100	77.480	Pan_troglodytes
ENSXCOG00000002836	prdm12b	91	82.596	ENSPANG00000025967	PRDM12	100	77.480	Papio_anubis
ENSXCOG00000002836	prdm12b	94	79.143	ENSPKIG00000004305	PRDM12	94	82.831	Paramormyrops_kingsleyae
ENSXCOG00000002836	prdm12b	99	83.511	ENSPKIG00000007228	prdm12b	100	83.511	Paramormyrops_kingsleyae
ENSXCOG00000002836	prdm12b	100	79.255	ENSPSIG00000006739	PRDM12	100	78.191	Pelodiscus_sinensis
ENSXCOG00000002836	prdm12b	99	75.641	ENSPMGG00000002356	-	100	74.872	Periophthalmus_magnuspinnatus
ENSXCOG00000002836	prdm12b	100	86.631	ENSPMGG00000008867	prdm12b	100	87.166	Periophthalmus_magnuspinnatus
ENSXCOG00000002836	prdm12b	96	78.846	ENSPEMG00000009969	Prdm12	90	83.036	Peromyscus_maniculatus_bairdii
ENSXCOG00000002836	prdm12b	100	79.357	ENSPCIG00000024119	PRDM12	100	78.075	Phascolarctos_cinereus
ENSXCOG00000002836	prdm12b	99	95.225	ENSPFOG00000019841	prdm12b	100	95.225	Poecilia_formosa
ENSXCOG00000002836	prdm12b	100	97.354	ENSPLAG00000016626	prdm12b	100	97.354	Poecilia_latipinna
ENSXCOG00000002836	prdm12b	96	97.802	ENSPMEG00000016698	prdm12b	99	97.802	Poecilia_mexicana
ENSXCOG00000002836	prdm12b	95	74.931	ENSPREG00000003211	-	94	74.380	Poecilia_reticulata
ENSXCOG00000002836	prdm12b	100	97.098	ENSPREG00000015073	prdm12b	100	97.098	Poecilia_reticulata
ENSXCOG00000002836	prdm12b	93	81.268	ENSPPYG00000019694	PRDM12	93	83.735	Pongo_abelii
ENSXCOG00000002836	prdm12b	91	82.596	ENSPCOG00000022255	PRDM12	100	78.016	Propithecus_coquereli
ENSXCOG00000002836	prdm12b	91	82.596	ENSPVAG00000001511	PRDM12	100	78.016	Pteropus_vampyrus
ENSXCOG00000002836	prdm12b	99	76.692	ENSPNYG00000013589	-	100	75.126	Pundamilia_nyererei
ENSXCOG00000002836	prdm12b	99	89.182	ENSPNYG00000009607	prdm12b	100	88.654	Pundamilia_nyererei
ENSXCOG00000002836	prdm12b	99	83.690	ENSPNAG00000024532	prdm12b	100	83.690	Pygocentrus_nattereri
ENSXCOG00000002836	prdm12b	99	79.101	ENSPNAG00000013396	PRDM12	100	79.101	Pygocentrus_nattereri
ENSXCOG00000002836	prdm12b	91	82.596	ENSRNOG00000009218	Prdm12	100	77.748	Rattus_norvegicus
ENSXCOG00000002836	prdm12b	87	83.642	ENSRBIG00000042712	PRDM12	88	82.927	Rhinopithecus_bieti
ENSXCOG00000002836	prdm12b	88	83.841	ENSRROG00000043554	PRDM12	100	83.841	Rhinopithecus_roxellana
ENSXCOG00000002836	prdm12b	100	78.877	ENSSHAG00000015972	PRDM12	100	77.600	Sarcophilus_harrisii
ENSXCOG00000002836	prdm12b	99	86.889	ENSSMAG00000003754	prdm12b	100	86.118	Scophthalmus_maximus
ENSXCOG00000002836	prdm12b	99	79.112	ENSSDUG00000019071	-	100	79.634	Seriola_dumerili
ENSXCOG00000002836	prdm12b	99	88.083	ENSSDUG00000023498	prdm12b	100	87.500	Seriola_dumerili
ENSXCOG00000002836	prdm12b	99	77.748	ENSSLDG00000013562	-	100	77.480	Seriola_lalandi_dorsalis
ENSXCOG00000002836	prdm12b	99	87.306	ENSSLDG00000009557	prdm12b	100	87.240	Seriola_lalandi_dorsalis
ENSXCOG00000002836	prdm12b	100	78.133	ENSSPUG00000013424	PRDM12	100	77.333	Sphenodon_punctatus
ENSXCOG00000002836	prdm12b	99	88.947	ENSSPAG00000018824	prdm12b	100	89.737	Stegastes_partitus
ENSXCOG00000002836	prdm12b	99	71.768	ENSSPAG00000022420	-	100	72.032	Stegastes_partitus
ENSXCOG00000002836	prdm12b	91	82.596	ENSSSCG00000005703	PRDM12	100	77.748	Sus_scrofa
ENSXCOG00000002836	prdm12b	99	76.720	ENSTRUG00000013239	-	100	76.984	Takifugu_rubripes
ENSXCOG00000002836	prdm12b	99	86.702	ENSTRUG00000018659	prdm12b	100	86.898	Takifugu_rubripes
ENSXCOG00000002836	prdm12b	99	75.862	ENSTNIG00000005859	-	99	75.066	Tetraodon_nigroviridis
ENSXCOG00000002836	prdm12b	99	86.436	ENSTNIG00000009020	prdm12b	99	86.364	Tetraodon_nigroviridis
ENSXCOG00000002836	prdm12b	91	82.596	ENSUAMG00000009653	PRDM12	91	83.036	Ursus_americanus
ENSXCOG00000002836	prdm12b	91	82.596	ENSVVUG00000027662	PRDM12	78	83.036	Vulpes_vulpes
ENSXCOG00000002836	prdm12b	99	75.000	ENSXMAG00000028012	-	100	74.500	Xiphophorus_maculatus
ENSXCOG00000002836	prdm12b	99	98.400	ENSXMAG00000005537	prdm12b	100	98.400	Xiphophorus_maculatus