EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000002869 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 27121 bases
Position: chrKQ557219.1:32081063-32108183
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	1	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	2	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	3	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	4	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	5	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	6	7
ENSXCOP00000003650	zf-C2H2	PF00096.26	4.9e-37	7	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	1	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	2	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	3	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	4	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	5	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	6	7
ENSXCOP00000003655	zf-C2H2	PF00096.26	9.2e-37	7	7
ENSXCOP00000003653	zf-C2H2	PF00096.26	2.7e-12	1	2
ENSXCOP00000003653	zf-C2H2	PF00096.26	2.7e-12	2	2
ENSXCOP00000003650	zf-met	PF12874.7	3e-07	1	1
ENSXCOP00000003655	zf-met	PF12874.7	3.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000003683	-	384	-	ENSXCOP00000003644	127 (aa)	-	-
ENSXCOT00000003694	-	1506	-	ENSXCOP00000003655	501 (aa)	-	-
ENSXCOT00000003689	-	1491	-	ENSXCOP00000003650	496 (aa)	-	-
ENSXCOT00000003692	-	663	-	ENSXCOP00000003653	220 (aa)	-	-
ENSXCOT00000003685	-	786	-	ENSXCOP00000003646	261 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000002869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000002869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000002869	-	76	40.351	ENSXCOG00000013004	-	89	40.351
ENSXCOG00000002869	-	55	45.455	ENSXCOG00000010948	-	58	44.203
ENSXCOG00000002869	-	81	40.511	ENSXCOG00000007957	-	89	39.785
ENSXCOG00000002869	-	60	40.000	ENSXCOG00000007376	-	97	42.640
ENSXCOG00000002869	-	56	44.364	ENSXCOG00000002473	-	89	44.364
ENSXCOG00000002869	-	64	40.838	ENSXCOG00000010576	-	84	41.053
ENSXCOG00000002869	-	50	39.286	ENSXCOG00000015435	-	81	40.244
ENSXCOG00000002869	-	54	46.512	ENSXCOG00000018253	-	96	42.460
ENSXCOG00000002869	-	58	44.304	ENSXCOG00000007529	-	97	43.367
ENSXCOG00000002869	-	56	36.250	ENSXCOG00000013504	znf384l	55	36.000
ENSXCOG00000002869	-	56	41.593	ENSXCOG00000019482	-	88	41.593
ENSXCOG00000002869	-	73	40.000	ENSXCOG00000019484	-	99	40.909
ENSXCOG00000002869	-	57	41.593	ENSXCOG00000009665	-	79	44.872
ENSXCOG00000002869	-	70	34.615	ENSXCOG00000009668	-	93	34.821
ENSXCOG00000002869	-	57	43.363	ENSXCOG00000013213	-	50	41.071
ENSXCOG00000002869	-	64	35.185	ENSXCOG00000001645	si:dkey-89b17.4	74	32.735
ENSXCOG00000002869	-	62	37.906	ENSXCOG00000003093	-	95	37.946
ENSXCOG00000002869	-	56	43.662	ENSXCOG00000010259	-	62	43.662
ENSXCOG00000002869	-	81	33.886	ENSXCOG00000007406	-	98	47.436
ENSXCOG00000002869	-	59	44.000	ENSXCOG00000009794	-	81	44.000
ENSXCOG00000002869	-	84	41.000	ENSXCOG00000009798	-	90	40.265
ENSXCOG00000002869	-	66	33.564	ENSXCOG00000003441	-	78	42.342
ENSXCOG00000002869	-	67	40.580	ENSXCOG00000001292	-	82	45.263
ENSXCOG00000002869	-	70	43.529	ENSXCOG00000015441	-	90	42.500
ENSXCOG00000002869	-	61	44.444	ENSXCOG00000016567	-	81	45.833
ENSXCOG00000002869	-	83	42.157	ENSXCOG00000019457	-	88	43.802
ENSXCOG00000002869	-	59	39.823	ENSXCOG00000003537	-	80	39.823
ENSXCOG00000002869	-	80	40.000	ENSXCOG00000003530	-	84	40.000
ENSXCOG00000002869	-	77	38.710	ENSXCOG00000003532	-	91	39.286
ENSXCOG00000002869	-	67	35.127	ENSXCOG00000003538	-	100	40.404
ENSXCOG00000002869	-	56	47.788	ENSXCOG00000009186	-	95	47.788
ENSXCOG00000002869	-	58	52.055	ENSXCOG00000016307	-	94	53.425
ENSXCOG00000002869	-	63	37.313	ENSXCOG00000015947	-	90	46.835
ENSXCOG00000002869	-	86	41.530	ENSXCOG00000003472	-	93	37.975
ENSXCOG00000002869	-	58	36.620	ENSXCOG00000008567	prdm5	69	36.620
ENSXCOG00000002869	-	61	41.899	ENSXCOG00000006951	-	85	45.695
ENSXCOG00000002869	-	56	41.000	ENSXCOG00000019377	-	92	43.038
ENSXCOG00000002869	-	81	39.344	ENSXCOG00000000254	-	90	39.394
ENSXCOG00000002869	-	70	43.529	ENSXCOG00000000354	-	74	45.045
ENSXCOG00000002869	-	77	46.341	ENSXCOG00000019401	-	96	46.341
ENSXCOG00000002869	-	58	39.732	ENSXCOG00000007979	-	71	40.455
ENSXCOG00000002869	-	62	30.986	ENSXCOG00000009768	-	80	30.986
ENSXCOG00000002869	-	56	30.822	ENSXCOG00000006699	hinfp	69	30.822
ENSXCOG00000002869	-	75	41.489	ENSXCOG00000006614	-	100	40.562
ENSXCOG00000002869	-	50	50.000	ENSXCOG00000012924	-	96	41.667
ENSXCOG00000002869	-	73	41.860	ENSXCOG00000012921	-	96	43.182
ENSXCOG00000002869	-	61	41.353	ENSXCOG00000006553	-	89	46.078
ENSXCOG00000002869	-	56	41.150	ENSXCOG00000017328	-	80	42.000
ENSXCOG00000002869	-	65	45.545	ENSXCOG00000002898	-	84	45.600
ENSXCOG00000002869	-	58	42.051	ENSXCOG00000007941	-	87	41.860
ENSXCOG00000002869	-	58	43.874	ENSXCOG00000007945	-	89	46.914
ENSXCOG00000002869	-	66	45.349	ENSXCOG00000007368	-	91	45.349
ENSXCOG00000002869	-	62	49.296	ENSXCOG00000011372	-	72	49.296
ENSXCOG00000002869	-	56	38.974	ENSXCOG00000012458	-	60	39.175
ENSXCOG00000002869	-	57	37.742	ENSXCOG00000017871	zgc:113343	64	40.594
ENSXCOG00000002869	-	76	40.364	ENSXCOG00000008116	-	98	40.511
ENSXCOG00000002869	-	65	36.000	ENSXCOG00000007499	zbtb41	60	36.000
ENSXCOG00000002869	-	57	46.528	ENSXCOG00000016117	-	97	46.528
ENSXCOG00000002869	-	56	43.145	ENSXCOG00000007139	-	78	43.145
ENSXCOG00000002869	-	58	43.836	ENSXCOG00000009674	-	84	43.836
ENSXCOG00000002869	-	63	44.177	ENSXCOG00000000528	-	84	42.714
ENSXCOG00000002869	-	64	42.857	ENSXCOG00000007414	-	93	40.070
ENSXCOG00000002869	-	56	41.358	ENSXCOG00000007413	-	63	38.144
ENSXCOG00000002869	-	75	42.545	ENSXCOG00000007994	-	88	46.078
ENSXCOG00000002869	-	54	38.931	ENSXCOG00000019861	-	56	35.789
ENSXCOG00000002869	-	81	37.273	ENSXCOG00000009785	-	89	37.273
ENSXCOG00000002869	-	61	38.994	ENSXCOG00000009781	-	97	40.000
ENSXCOG00000002869	-	76	45.161	ENSXCOG00000003451	-	88	43.750
ENSXCOG00000002869	-	59	43.846	ENSXCOG00000020768	-	67	44.186
ENSXCOG00000002869	-	60	41.202	ENSXCOG00000019481	-	93	43.396
ENSXCOG00000002869	-	82	43.056	ENSXCOG00000007076	-	98	43.056
ENSXCOG00000002869	-	62	32.824	ENSXCOG00000018315	-	90	34.746
ENSXCOG00000002869	-	84	42.157	ENSXCOG00000009003	-	92	42.745
ENSXCOG00000002869	-	75	40.361	ENSXCOG00000013870	-	72	40.625
ENSXCOG00000002869	-	70	42.128	ENSXCOG00000019443	-	95	47.541
ENSXCOG00000002869	-	66	42.807	ENSXCOG00000001226	-	91	47.674
ENSXCOG00000002869	-	56	43.103	ENSXCOG00000003484	-	62	43.103
ENSXCOG00000002869	-	72	41.176	ENSXCOG00000010567	-	94	42.466
ENSXCOG00000002869	-	65	43.038	ENSXCOG00000009997	-	68	35.749
ENSXCOG00000002869	-	60	36.782	ENSXCOG00000009992	zbtb47b	89	35.484
ENSXCOG00000002869	-	63	36.652	ENSXCOG00000014363	-	66	39.175
ENSXCOG00000002869	-	71	44.015	ENSXCOG00000016860	-	97	43.590
ENSXCOG00000002869	-	81	43.627	ENSXCOG00000001116	-	95	43.077
ENSXCOG00000002869	-	63	44.262	ENSXCOG00000010507	-	52	47.222
ENSXCOG00000002869	-	59	37.838	ENSXCOG00000013787	-	67	35.714
ENSXCOG00000002869	-	61	40.650	ENSXCOG00000010950	si:dkey-210j14.3	66	40.650
ENSXCOG00000002869	-	64	31.222	ENSXCOG00000005697	-	95	31.364
ENSXCOG00000002869	-	57	44.286	ENSXCOG00000006688	znf367	63	44.286
ENSXCOG00000002869	-	61	37.324	ENSXCOG00000010422	-	58	37.324
ENSXCOG00000002869	-	79	38.889	ENSXCOG00000003001	-	98	31.193
ENSXCOG00000002869	-	62	42.857	ENSXCOG00000019492	-	99	40.580
ENSXCOG00000002869	-	77	39.640	ENSXCOG00000019149	znf526	90	35.514
ENSXCOG00000002869	-	65	44.262	ENSXCOG00000019382	-	73	44.262
ENSXCOG00000002869	-	72	34.100	ENSXCOG00000003435	-	93	34.100
ENSXCOG00000002869	-	59	41.786	ENSXCOG00000003431	-	83	41.935
ENSXCOG00000002869	-	55	37.143	ENSXCOG00000015084	snai2	64	39.726
ENSXCOG00000002869	-	79	43.820	ENSXCOG00000013066	-	87	43.820
ENSXCOG00000002869	-	58	33.333	ENSXCOG00000009597	ZNF319	87	33.566
ENSXCOG00000002869	-	58	41.040	ENSXCOG00000003499	-	65	41.000
ENSXCOG00000002869	-	56	38.991	ENSXCOG00000014361	-	61	39.171
ENSXCOG00000002869	-	57	36.207	ENSXCOG00000008003	-	54	39.535
ENSXCOG00000002869	-	56	42.169	ENSXCOG00000013306	-	73	35.758
ENSXCOG00000002869	-	89	38.776	ENSXCOG00000007937	-	76	42.361
ENSXCOG00000002869	-	80	39.394	ENSXCOG00000001200	-	96	41.837
ENSXCOG00000002869	-	58	41.786	ENSXCOG00000015312	-	89	41.935
ENSXCOG00000002869	-	56	46.951	ENSXCOG00000002512	-	76	46.951
ENSXCOG00000002869	-	73	41.667	ENSXCOG00000007396	-	89	39.583
ENSXCOG00000002869	-	56	37.407	ENSXCOG00000003896	-	61	40.000
ENSXCOG00000002869	-	63	42.273	ENSXCOG00000002857	-	95	45.122
ENSXCOG00000002869	-	58	39.732	ENSXCOG00000007987	-	75	39.732
ENSXCOG00000002869	-	61	47.561	ENSXCOG00000007981	-	86	47.561
ENSXCOG00000002869	-	61	40.000	ENSXCOG00000003468	-	83	40.513
ENSXCOG00000002869	-	71	41.885	ENSXCOG00000008083	-	93	43.750
ENSXCOG00000002869	-	57	46.032	ENSXCOG00000008062	-	97	48.023
ENSXCOG00000002869	-	65	44.186	ENSXCOG00000010488	-	70	42.593
ENSXCOG00000002869	-	74	33.508	ENSXCOG00000003438	-	88	34.177
ENSXCOG00000002869	-	57	43.103	ENSXCOG00000008978	-	96	45.455
ENSXCOG00000002869	-	75	41.667	ENSXCOG00000011725	-	97	41.429
ENSXCOG00000002869	-	69	38.961	ENSXCOG00000009772	-	85	38.961
ENSXCOG00000002869	-	61	45.361	ENSXCOG00000009777	-	59	45.361
ENSXCOG00000002869	-	63	38.060	ENSXCOG00000019675	scrt1b	68	39.695
ENSXCOG00000002869	-	62	43.243	ENSXCOG00000003493	-	76	43.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000002869	-	73	49.734	ENSG00000175213	ZNF408	51	51.213	Homo_sapiens
ENSXCOG00000002869	-	75	48.446	ENSAMEG00000006904	ZNF408	52	49.868	Ailuropoda_melanoleuca
ENSXCOG00000002869	-	90	43.967	ENSANAG00000036294	ZNF408	74	44.376	Aotus_nancymaae
ENSXCOG00000002869	-	96	53.846	ENSAMXG00000032642	znf408	76	53.846	Astyanax_mexicanus
ENSXCOG00000002869	-	90	43.210	ENSCJAG00000019859	ZNF408	67	44.172	Callithrix_jacchus
ENSXCOG00000002869	-	75	47.692	ENSCAFG00000009143	ZNF408	51	49.738	Canis_familiaris
ENSXCOG00000002869	-	75	47.692	ENSCAFG00020019155	ZNF408	51	49.738	Canis_lupus_dingo
ENSXCOG00000002869	-	75	47.409	ENSCHIG00000025346	ZNF408	61	49.333	Capra_hircus
ENSXCOG00000002869	-	73	48.794	ENSTSYG00000025443	ZNF408	53	50.270	Carlito_syrichta
ENSXCOG00000002869	-	88	44.872	ENSCCAG00000029472	ZNF408	65	45.085	Cebus_capucinus
ENSXCOG00000002869	-	57	58.657	ENSCHOG00000009909	ZNF408	54	59.364	Choloepus_hoffmanni
ENSXCOG00000002869	-	73	47.467	ENSCGRG00001023588	Zfp408	52	48.000	Cricetulus_griseus_chok1gshd
ENSXCOG00000002869	-	73	47.467	ENSCGRG00000017618	Zfp408	52	48.000	Cricetulus_griseus_crigri
ENSXCOG00000002869	-	73	49.866	ENSDNOG00000047669	ZNF408	51	51.791	Dasypus_novemcinctus
ENSXCOG00000002869	-	67	50.432	ENSDORG00000000387	Zfp408	51	51.895	Dipodomys_ordii
ENSXCOG00000002869	-	65	50.000	ENSETEG00000017621	-	55	45.973	Echinops_telfairi
ENSXCOG00000002869	-	73	48.794	ENSEASG00005015461	ZNF408	53	49.194	Equus_asinus_asinus
ENSXCOG00000002869	-	73	48.930	ENSECAG00000010878	ZNF408	54	49.596	Equus_caballus
ENSXCOG00000002869	-	79	51.163	ENSEEUG00000010466	ZNF408	60	53.846	Erinaceus_europaeus
ENSXCOG00000002869	-	73	48.031	ENSFCAG00000029105	ZNF408	53	48.947	Felis_catus
ENSXCOG00000002869	-	85	78.780	ENSFHEG00000016754	-	81	79.045	Fundulus_heteroclitus
ENSXCOG00000002869	-	56	63.345	ENSGMOG00000007809	-	100	63.345	Gadus_morhua
ENSXCOG00000002869	-	100	88.158	ENSGAFG00000018557	-	82	88.158	Gambusia_affinis
ENSXCOG00000002869	-	73	49.734	ENSGGOG00000010152	ZNF408	51	51.213	Gorilla_gorilla
ENSXCOG00000002869	-	73	48.663	ENSLAFG00000027848	ZNF408	65	47.805	Loxodonta_africana
ENSXCOG00000002869	-	73	48.031	ENSMICG00000045320	ZNF408	51	50.269	Microcebus_murinus
ENSXCOG00000002869	-	75	48.329	ENSMPUG00000005490	ZNF408	52	49.471	Mustela_putorius_furo
ENSXCOG00000002869	-	95	41.980	ENSNGAG00000000309	Zfp408	69	43.058	Nannospalax_galili
ENSXCOG00000002869	-	73	50.000	ENSNLEG00000014132	ZNF408	51	50.815	Nomascus_leucogenys
ENSXCOG00000002869	-	71	52.778	ENSOPRG00000009225	ZNF408	54	52.778	Ochotona_princeps
ENSXCOG00000002869	-	89	44.301	ENSOCUG00000010953	ZNF408	64	44.731	Oryctolagus_cuniculus
ENSXCOG00000002869	-	73	50.000	ENSOGAG00000034080	ZNF408	60	50.678	Otolemur_garnettii
ENSXCOG00000002869	-	73	49.734	ENSPPAG00000034993	ZNF408	51	51.213	Pan_paniscus
ENSXCOG00000002869	-	73	48.031	ENSPPRG00000016866	ZNF408	53	48.947	Panthera_pardus
ENSXCOG00000002869	-	73	48.031	ENSPTIG00000015467	ZNF408	52	48.947	Panthera_tigris_altaica
ENSXCOG00000002869	-	73	49.734	ENSPTRG00000003551	ZNF408	51	51.213	Pan_troglodytes
ENSXCOG00000002869	-	60	56.146	ENSPEMG00000016757	Zfp408	54	56.146	Peromyscus_maniculatus_bairdii
ENSXCOG00000002869	-	100	89.474	ENSPFOG00000001760	-	100	92.806	Poecilia_formosa
ENSXCOG00000002869	-	83	89.474	ENSPLAG00000019895	-	68	89.474	Poecilia_latipinna
ENSXCOG00000002869	-	100	87.352	ENSPMEG00000021147	-	98	87.352	Poecilia_mexicana
ENSXCOG00000002869	-	100	90.789	ENSPREG00000017068	-	80	90.789	Poecilia_reticulata
ENSXCOG00000002869	-	73	49.202	ENSPPYG00000003318	ZNF408	62	50.943	Pongo_abelii
ENSXCOG00000002869	-	77	47.462	ENSPCAG00000014001	ZNF408	56	48.872	Procavia_capensis
ENSXCOG00000002869	-	73	48.549	ENSPCOG00000028698	ZNF408	51	50.135	Propithecus_coquereli
ENSXCOG00000002869	-	73	48.525	ENSPVAG00000015791	ZNF408	52	49.185	Pteropus_vampyrus
ENSXCOG00000002869	-	73	49.330	ENSSBOG00000033023	ZNF408	51	51.206	Saimiri_boliviensis_boliviensis
ENSXCOG00000002869	-	75	47.436	ENSSSCG00000023097	ZNF408	50	46.667	Sus_scrofa
ENSXCOG00000002869	-	75	47.927	ENSUAMG00000026154	ZNF408	52	49.337	Ursus_americanus
ENSXCOG00000002869	-	75	47.927	ENSUMAG00000014405	ZNF408	52	49.337	Ursus_maritimus
ENSXCOG00000002869	-	73	47.769	ENSVVUG00000026805	ZNF408	50	49.866	Vulpes_vulpes
ENSXCOG00000002869	-	83	45.455	ENSXETG00000001980	znf408	99	45.833	Xenopus_tropicalis
ENSXCOG00000002869	-	100	92.659	ENSXMAG00000018347	-	100	92.659	Xiphophorus_maculatus