EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003001 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 1038 bases
Position: chrKQ557214.1:22404979-22406016
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	1	6
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	2	6
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	3	6
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	4	6
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	5	6
ENSXCOP00000003822	zf-C2H2	PF00096.26	3.3e-29	6	6
ENSXCOP00000003822	zf-met	PF12874.7	1.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000003865	-	990	-	ENSXCOP00000003822	329 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003001	-	87	35.714	ENSXCOG00000019149	znf526	60	35.714
ENSXCOG00000003001	-	87	30.180	ENSXCOG00000008978	-	93	30.180
ENSXCOG00000003001	-	91	34.043	ENSXCOG00000019401	-	94	34.043
ENSXCOG00000003001	-	85	38.043	ENSXCOG00000000254	-	60	38.043
ENSXCOG00000003001	-	90	38.356	ENSXCOG00000007376	-	92	34.576
ENSXCOG00000003001	-	89	37.607	ENSXCOG00000015947	-	93	37.607
ENSXCOG00000003001	-	87	41.667	ENSXCOG00000002857	-	93	41.667
ENSXCOG00000003001	-	86	35.165	ENSXCOG00000012645	-	53	35.165
ENSXCOG00000003001	-	95	32.948	ENSXCOG00000007529	-	99	34.130
ENSXCOG00000003001	-	92	39.560	ENSXCOG00000007957	-	83	34.615
ENSXCOG00000003001	-	91	35.465	ENSXCOG00000020768	-	82	35.398
ENSXCOG00000003001	-	86	35.833	ENSXCOG00000000528	-	94	33.158
ENSXCOG00000003001	-	87	38.806	ENSXCOG00000019382	-	80	38.806
ENSXCOG00000003001	-	86	38.983	ENSXCOG00000014361	-	59	38.983
ENSXCOG00000003001	-	86	43.333	ENSXCOG00000009674	-	81	43.333
ENSXCOG00000003001	-	85	34.524	ENSXCOG00000007413	-	63	34.524
ENSXCOG00000003001	-	87	37.778	ENSXCOG00000007414	-	92	32.082
ENSXCOG00000003001	-	89	32.867	ENSXCOG00000016567	-	81	32.867
ENSXCOG00000003001	-	85	37.273	ENSXCOG00000003896	-	60	35.758
ENSXCOG00000003001	-	87	38.655	ENSXCOG00000009186	-	92	38.655
ENSXCOG00000003001	-	89	34.979	ENSXCOG00000011725	-	98	33.681
ENSXCOG00000003001	-	50	41.667	ENSXCOG00000015428	-	73	41.667
ENSXCOG00000003001	-	89	46.809	ENSXCOG00000007981	-	82	40.000
ENSXCOG00000003001	-	89	34.884	ENSXCOG00000007987	-	75	34.884
ENSXCOG00000003001	-	88	31.939	ENSXCOG00000012458	-	64	31.939
ENSXCOG00000003001	-	85	33.939	ENSXCOG00000010488	-	60	33.939
ENSXCOG00000003001	-	87	37.895	ENSXCOG00000018253	-	92	37.895
ENSXCOG00000003001	-	90	40.000	ENSXCOG00000003472	-	84	32.530
ENSXCOG00000003001	-	93	32.459	ENSXCOG00000001292	-	86	32.459
ENSXCOG00000003001	-	89	32.394	ENSXCOG00000012924	-	93	32.394
ENSXCOG00000003001	-	90	36.709	ENSXCOG00000012921	-	96	36.709
ENSXCOG00000003001	-	95	38.202	ENSXCOG00000016860	-	99	33.714
ENSXCOG00000003001	-	88	32.639	ENSXCOG00000017871	zgc:113343	65	45.283
ENSXCOG00000003001	-	95	32.292	ENSXCOG00000010567	-	88	32.374
ENSXCOG00000003001	-	83	31.618	ENSXCOG00000010948	-	73	31.618
ENSXCOG00000003001	-	90	30.544	ENSXCOG00000003537	-	74	34.524
ENSXCOG00000003001	-	90	34.237	ENSXCOG00000003532	-	80	34.237
ENSXCOG00000003001	-	91	33.559	ENSXCOG00000003530	-	82	43.678
ENSXCOG00000003001	-	95	37.569	ENSXCOG00000006553	-	85	37.569
ENSXCOG00000003001	-	89	32.714	ENSXCOG00000008062	-	97	35.556
ENSXCOG00000003001	-	87	30.686	ENSXCOG00000007979	-	71	35.567
ENSXCOG00000003001	-	90	34.746	ENSXCOG00000016117	-	96	34.746
ENSXCOG00000003001	-	95	34.444	ENSXCOG00000019492	-	98	34.444
ENSXCOG00000003001	-	86	33.696	ENSXCOG00000009992	zbtb47b	77	33.696
ENSXCOG00000003001	-	85	42.857	ENSXCOG00000003484	-	60	42.857
ENSXCOG00000003001	-	89	35.632	ENSXCOG00000001226	-	87	34.818
ENSXCOG00000003001	-	52	37.634	ENSXCOG00000015435	-	87	43.103
ENSXCOG00000003001	-	85	35.333	ENSXCOG00000009781	-	62	35.333
ENSXCOG00000003001	-	85	33.808	ENSXCOG00000009597	ZNF319	91	33.808
ENSXCOG00000003001	-	88	40.945	ENSXCOG00000008056	-	51	40.945
ENSXCOG00000003001	-	90	30.824	ENSXCOG00000018117	znf710b	50	30.824
ENSXCOG00000003001	-	86	32.867	ENSXCOG00000013504	znf384l	53	32.867
ENSXCOG00000003001	-	87	34.591	ENSXCOG00000002473	-	88	33.610
ENSXCOG00000003001	-	98	31.193	ENSXCOG00000002869	-	79	38.889
ENSXCOG00000003001	-	87	43.636	ENSXCOG00000006614	-	91	31.559
ENSXCOG00000003001	-	94	37.607	ENSXCOG00000013066	-	91	37.607
ENSXCOG00000003001	-	87	33.051	ENSXCOG00000015312	-	91	33.051
ENSXCOG00000003001	-	95	40.244	ENSXCOG00000003451	-	88	41.379
ENSXCOG00000003001	-	87	31.290	ENSXCOG00000007076	-	99	32.270
ENSXCOG00000003001	-	99	37.903	ENSXCOG00000019443	-	96	39.474
ENSXCOG00000003001	-	86	39.024	ENSXCOG00000009665	-	79	39.024
ENSXCOG00000003001	-	86	31.633	ENSXCOG00000009668	-	79	31.633
ENSXCOG00000003001	-	95	31.313	ENSXCOG00000007406	-	99	33.333
ENSXCOG00000003001	-	95	35.484	ENSXCOG00000007139	-	74	35.484
ENSXCOG00000003001	-	86	32.727	ENSXCOG00000009785	-	63	34.444
ENSXCOG00000003001	-	86	34.375	ENSXCOG00000005697	-	95	34.375
ENSXCOG00000003001	-	98	35.099	ENSXCOG00000007994	-	92	33.217
ENSXCOG00000003001	-	87	35.417	ENSXCOG00000008083	-	92	32.500
ENSXCOG00000003001	-	85	39.091	ENSXCOG00000003468	-	77	39.091
ENSXCOG00000003001	-	94	34.932	ENSXCOG00000016307	-	98	35.417
ENSXCOG00000003001	-	95	37.778	ENSXCOG00000002898	-	91	33.921
ENSXCOG00000003001	-	90	33.861	ENSXCOG00000003538	-	85	33.861
ENSXCOG00000003001	-	99	41.667	ENSXCOG00000001200	-	93	41.667
ENSXCOG00000003001	-	87	35.294	ENSXCOG00000020769	-	88	34.737
ENSXCOG00000003001	-	87	33.523	ENSXCOG00000010576	-	74	33.523
ENSXCOG00000003001	-	89	33.688	ENSXCOG00000013004	-	76	33.333
ENSXCOG00000003001	-	84	36.735	ENSXCOG00000012064	-	57	36.735
ENSXCOG00000003001	-	86	32.331	ENSXCOG00000015084	snai2	57	34.483
ENSXCOG00000003001	-	74	38.202	ENSXCOG00000018615	-	89	38.202
ENSXCOG00000003001	-	87	35.000	ENSXCOG00000002512	-	72	35.000
ENSXCOG00000003001	-	99	46.667	ENSXCOG00000018799	sall3b	58	43.860
ENSXCOG00000003001	-	89	35.664	ENSXCOG00000007368	-	94	35.664
ENSXCOG00000003001	-	83	35.417	ENSXCOG00000020638	wt1a	53	35.417
ENSXCOG00000003001	-	89	32.710	ENSXCOG00000001116	-	92	31.224
ENSXCOG00000003001	-	87	32.374	ENSXCOG00000003435	-	85	30.131
ENSXCOG00000003001	-	90	36.111	ENSXCOG00000003431	-	82	37.302
ENSXCOG00000003001	-	88	35.227	ENSXCOG00000003438	-	70	35.227
ENSXCOG00000003001	-	87	39.560	ENSXCOG00000013306	-	58	39.560
ENSXCOG00000003001	-	87	33.191	ENSXCOG00000007945	-	88	38.462
ENSXCOG00000003001	-	95	30.769	ENSXCOG00000007941	-	83	34.188
ENSXCOG00000003001	-	90	37.273	ENSXCOG00000009777	-	62	37.273
ENSXCOG00000003001	-	85	32.335	ENSXCOG00000009772	-	78	32.335
ENSXCOG00000003001	-	58	31.858	ENSXCOG00000018980	-	55	31.967
ENSXCOG00000003001	-	82	40.000	ENSXCOG00000010950	si:dkey-210j14.3	73	40.000
ENSXCOG00000003001	-	90	31.933	ENSXCOG00000018315	-	90	31.933
ENSXCOG00000003001	-	89	34.276	ENSXCOG00000017328	-	79	36.538
ENSXCOG00000003001	-	87	38.596	ENSXCOG00000003441	-	58	31.690
ENSXCOG00000003001	-	86	39.024	ENSXCOG00000014363	-	59	39.024
ENSXCOG00000003001	-	89	34.322	ENSXCOG00000007937	-	77	33.190
ENSXCOG00000003001	-	87	37.984	ENSXCOG00000008116	-	98	32.639
ENSXCOG00000003001	-	89	35.669	ENSXCOG00000019457	-	86	35.780
ENSXCOG00000003001	-	97	32.911	ENSXCOG00000006951	-	75	32.911
ENSXCOG00000003001	-	87	37.143	ENSXCOG00000010259	-	70	36.134
ENSXCOG00000003001	-	95	31.293	ENSXCOG00000013787	-	67	31.293
ENSXCOG00000003001	-	88	38.182	ENSXCOG00000009003	-	90	33.094
ENSXCOG00000003001	-	86	35.000	ENSXCOG00000003093	-	84	34.286
ENSXCOG00000003001	-	86	35.106	ENSXCOG00000010422	-	51	35.106
ENSXCOG00000003001	-	86	31.349	ENSXCOG00000009794	-	74	31.349
ENSXCOG00000003001	-	87	45.098	ENSXCOG00000009798	-	67	45.098
ENSXCOG00000003001	-	87	33.459	ENSXCOG00000019377	-	93	33.459
ENSXCOG00000003001	-	87	32.174	ENSXCOG00000013870	-	73	32.174
ENSXCOG00000003001	-	90	34.737	ENSXCOG00000015441	-	83	34.737
ENSXCOG00000003001	-	87	33.101	ENSXCOG00000000354	-	75	33.101
ENSXCOG00000003001	-	89	38.150	ENSXCOG00000019482	-	82	38.150
ENSXCOG00000003001	-	85	39.394	ENSXCOG00000019484	-	80	44.928
ENSXCOG00000003001	-	90	41.129	ENSXCOG00000003493	-	72	41.129
ENSXCOG00000003001	-	85	40.909	ENSXCOG00000003499	-	52	40.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003001	-	97	56.169	ENSACIG00000011516	-	91	57.391	Amphilophus_citrinellus
ENSXCOG00000003001	-	95	40.000	ENSAPEG00000009826	-	95	35.106	Amphiprion_percula
ENSXCOG00000003001	-	87	31.579	ENSCING00000024379	-	80	31.579	Ciona_intestinalis
ENSXCOG00000003001	-	99	58.735	ENSCSEG00000018571	-	63	58.735	Cynoglossus_semilaevis
ENSXCOG00000003001	-	88	32.143	ENSELUG00000010470	-	56	32.143	Esox_lucius
ENSXCOG00000003001	-	87	42.169	ENSOPRG00000011038	ZNF771	92	34.286	Ochotona_princeps
ENSXCOG00000003001	-	83	31.707	ENSORLG00000026680	-	73	31.707	Oryzias_latipes
ENSXCOG00000003001	-	83	31.707	ENSORLG00020015911	-	73	31.325	Oryzias_latipes_hni
ENSXCOG00000003001	-	83	31.707	ENSORLG00015021388	-	73	31.707	Oryzias_latipes_hsok
ENSXCOG00000003001	-	87	45.161	ENSTBEG00000017192	ZNF771	81	45.161	Tupaia_belangeri