EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003212 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3411 bases
Position: chrKQ557201.1:8863580-8866990
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004116	RRM_1	PF00076.22	9.8e-31	1	2
ENSXCOP00000004116	RRM_1	PF00076.22	9.8e-31	2	2
ENSXCOP00000004106	RRM_1	PF00076.22	5.1e-30	1	2
ENSXCOP00000004106	RRM_1	PF00076.22	5.1e-30	2	2
ENSXCOP00000004113	RRM_1	PF00076.22	5.5e-22	1	2
ENSXCOP00000004113	RRM_1	PF00076.22	5.5e-22	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004162	-	1026	-	ENSXCOP00000004116	342 (aa)	-	-
ENSXCOT00000004150	-	1047	-	ENSXCOP00000004106	348 (aa)	-	-
ENSXCOT00000004158	-	1020	-	ENSXCOP00000004113	339 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003212's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003212	-	63	35.874	ENSXCOG00000009643	-	75	37.949
ENSXCOG00000003212	-	73	48.689	ENSXCOG00000001570	srsf5b	62	54.945
ENSXCOG00000003212	-	54	58.696	ENSXCOG00000015338	srsf5a	60	59.783
ENSXCOG00000003212	-	59	35.885	ENSXCOG00000017888	-	79	34.419
ENSXCOG00000003212	-	55	73.822	ENSXCOG00000018826	srsf4	89	66.400

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003212	-	55	78.191	ENSG00000116350	SRSF4	53	100.000	Homo_sapiens
ENSXCOG00000003212	-	55	70.745	ENSACIG00000018649	srsf4	90	68.182	Amphilophus_citrinellus
ENSXCOG00000003212	-	51	69.364	ENSAOCG00000005997	srsf4	92	70.520	Amphiprion_ocellaris
ENSXCOG00000003212	-	54	73.514	ENSATEG00000005680	srsf4	60	74.054	Anabas_testudineus
ENSXCOG00000003212	-	55	74.468	ENSACLG00000003395	srsf4	63	80.263	Astatotilapia_calliptera
ENSXCOG00000003212	-	92	77.215	ENSACLG00000021269	-	85	79.688	Astatotilapia_calliptera
ENSXCOG00000003212	-	73	57.258	ENSAMXG00000034811	srsf4	75	75.000	Astyanax_mexicanus
ENSXCOG00000003212	-	54	50.754	WBGene00004698	rsp-1	97	50.350	Caenorhabditis_elegans
ENSXCOG00000003212	-	54	51.579	ENSCING00000011362	-	65	53.514	Ciona_intestinalis
ENSXCOG00000003212	-	59	51.869	ENSCING00000020631	-	82	53.266	Ciona_intestinalis
ENSXCOG00000003212	-	54	52.000	ENSCING00000024718	-	75	39.077	Ciona_intestinalis
ENSXCOG00000003212	-	54	58.621	ENSCING00000012370	-	67	58.883	Ciona_intestinalis
ENSXCOG00000003212	-	59	57.767	ENSCSAVG00000002581	-	98	49.141	Ciona_savignyi
ENSXCOG00000003212	-	55	72.340	ENSCSEG00000010058	srsf4	75	68.939	Cynoglossus_semilaevis
ENSXCOG00000003212	-	55	68.783	ENSDARG00000105293	srsf4	72	75.000	Danio_rerio
ENSXCOG00000003212	-	54	65.217	FBgn0004587	B52	96	57.576	Drosophila_melanogaster
ENSXCOG00000003212	-	63	57.674	ENSEBUG00000001681	srsf4	67	59.358	Eptatretus_burgeri
ENSXCOG00000003212	-	55	78.191	ENSEEUG00000008479	SRSF4	71	55.525	Erinaceus_europaeus
ENSXCOG00000003212	-	55	67.876	ENSELUG00000017551	srsf4	93	66.165	Esox_lucius
ENSXCOG00000003212	-	55	70.745	ENSFHEG00000007472	srsf4	82	78.947	Fundulus_heteroclitus
ENSXCOG00000003212	-	67	54.894	ENSGMOG00000012906	srsf4	56	69.681	Gadus_morhua
ENSXCOG00000003212	-	55	78.191	ENSGALG00000050314	SRSF4	50	62.249	Gallus_gallus
ENSXCOG00000003212	-	75	57.752	ENSGAFG00000018496	srsf4	71	75.000	Gambusia_affinis
ENSXCOG00000003212	-	55	72.872	ENSGACG00000002389	srsf4	55	66.667	Gasterosteus_aculeatus
ENSXCOG00000003212	-	93	80.251	ENSHBUG00000011326	-	86	80.312	Haplochromis_burtoni
ENSXCOG00000003212	-	97	45.902	ENSHCOG00000012540	srsf4	68	72.872	Hippocampus_comes
ENSXCOG00000003212	-	73	61.508	ENSKMAG00000013631	srsf4	81	63.889	Kryptolebias_marmoratus
ENSXCOG00000003212	-	54	89.247	ENSLOCG00000001442	-	50	79.781	Lepisosteus_oculatus
ENSXCOG00000003212	-	74	56.536	ENSMMUG00000007110	SRSF4	60	55.319	Macaca_mulatta
ENSXCOG00000003212	-	55	74.468	ENSMAMG00000004888	srsf4	68	71.809	Mastacembelus_armatus
ENSXCOG00000003212	-	55	74.468	ENSMZEG00005026275	srsf4	63	80.263	Maylandia_zebra
ENSXCOG00000003212	-	55	78.191	ENSMGAG00000002400	SRSF4	50	62.249	Meleagris_gallopavo
ENSXCOG00000003212	-	74	53.310	ENSMMOG00000013653	srsf4	65	72.289	Mola_mola
ENSXCOG00000003212	-	55	78.723	ENSMODG00000011052	SRSF4	55	76.596	Monodelphis_domestica
ENSXCOG00000003212	-	56	73.822	ENSMALG00000013392	srsf4	66	70.745	Monopterus_albus
ENSXCOG00000003212	-	55	74.603	ENSNLEG00000030787	-	62	71.809	Nomascus_leucogenys
ENSXCOG00000003212	-	55	71.809	ENSORLG00020016052	srsf4	66	72.340	Oryzias_latipes_hni
ENSXCOG00000003212	-	55	71.809	ENSORLG00015007566	srsf4	70	72.340	Oryzias_latipes_hsok
ENSXCOG00000003212	-	55	71.809	ENSOMEG00000005541	srsf4	51	72.340	Oryzias_melastigma
ENSXCOG00000003212	-	55	69.543	ENSPMGG00000013436	srsf4	95	68.182	Periophthalmus_magnuspinnatus
ENSXCOG00000003212	-	78	54.478	ENSPMAG00000009397	srsf4	68	61.497	Petromyzon_marinus
ENSXCOG00000003212	-	55	57.979	ENSPMAG00000008001	srsf4	59	44.172	Petromyzon_marinus
ENSXCOG00000003212	-	55	75.532	ENSPFOG00000001306	srsf4	62	63.291	Poecilia_formosa
ENSXCOG00000003212	-	55	75.532	ENSPLAG00000008812	srsf4	56	70.854	Poecilia_latipinna
ENSXCOG00000003212	-	55	73.822	ENSPMEG00000023638	srsf4	53	71.809	Poecilia_mexicana
ENSXCOG00000003212	-	70	87.398	ENSPREG00000001026	-	100	95.935	Poecilia_reticulata
ENSXCOG00000003212	-	54	77.612	ENSPREG00000009639	srsf4	84	75.362	Poecilia_reticulata
ENSXCOG00000003212	-	55	78.191	ENSPCOG00000027341	SRSF4	62	52.601	Propithecus_coquereli
ENSXCOG00000003212	-	75	54.064	ENSPNYG00000003796	srsf4	56	72.340	Pundamilia_nyererei
ENSXCOG00000003212	-	54	71.505	ENSPNAG00000023844	srsf4	53	70.213	Pygocentrus_nattereri
ENSXCOG00000003212	-	89	59.076	ENSSHAG00000012407	SRSF4	79	56.098	Sarcophilus_harrisii
ENSXCOG00000003212	-	56	70.681	ENSSFOG00015020292	srsf4	71	78.947	Scleropages_formosus
ENSXCOG00000003212	-	55	73.404	ENSSMAG00000001707	srsf4	50	74.468	Scophthalmus_maximus
ENSXCOG00000003212	-	71	61.475	ENSSDUG00000007387	srsf4	54	67.816	Seriola_dumerili
ENSXCOG00000003212	-	74	49.615	ENSSLDG00000009745	srsf4	61	68.944	Seriola_lalandi_dorsalis
ENSXCOG00000003212	-	68	68.511	ENSSPAG00000014538	srsf4	83	68.939	Stegastes_partitus
ENSXCOG00000003212	-	73	58.915	ENSTRUG00000011891	srsf4	62	70.681	Takifugu_rubripes