EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003220 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3995 bases
Position: chrKQ557224.1:17085199-17089193
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004103	RRM_1	PF00076.22	3.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004147	-	351	-	ENSXCOP00000004103	116 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003220's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003220's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003220	-	71	93.902	ENSXCOG00000015127	-	88	93.902
ENSXCOG00000003220	-	75	65.517	ENSXCOG00000017792	-	68	65.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003220	-	77	67.416	ENSG00000153914	SREK1	92	68.478	Homo_sapiens
ENSXCOG00000003220	-	77	77.528	ENSG00000116754	SRSF11	70	78.889	Homo_sapiens
ENSXCOG00000003220	-	72	95.238	ENSAPOG00000007244	-	60	95.238	Acanthochromis_polyacanthus
ENSXCOG00000003220	-	72	93.976	ENSAPOG00000004488	-	77	93.976	Acanthochromis_polyacanthus
ENSXCOG00000003220	-	72	93.976	ENSACIG00000018075	-	77	93.976	Amphilophus_citrinellus
ENSXCOG00000003220	-	72	97.590	ENSACIG00000012348	-	87	97.590	Amphilophus_citrinellus
ENSXCOG00000003220	-	73	67.059	ENSACIG00000015055	-	68	67.059	Amphilophus_citrinellus
ENSXCOG00000003220	-	68	96.203	ENSAOCG00000000739	-	84	96.203	Amphiprion_ocellaris
ENSXCOG00000003220	-	73	68.235	ENSAOCG00000024368	-	86	68.235	Amphiprion_ocellaris
ENSXCOG00000003220	-	72	93.976	ENSAPEG00000003619	SRSF11	77	93.976	Amphiprion_percula
ENSXCOG00000003220	-	72	95.181	ENSAPEG00000003142	SRSF11	86	95.181	Amphiprion_percula
ENSXCOG00000003220	-	73	68.235	ENSAPEG00000002218	-	92	68.235	Amphiprion_percula
ENSXCOG00000003220	-	75	66.667	ENSATEG00000009464	-	96	66.667	Anabas_testudineus
ENSXCOG00000003220	-	78	90.110	ENSATEG00000011691	srsf11	81	92.045	Anabas_testudineus
ENSXCOG00000003220	-	72	93.976	ENSATEG00000007534	-	77	93.976	Anabas_testudineus
ENSXCOG00000003220	-	80	68.817	ENSANAG00000031358	SREK1	90	70.000	Aotus_nancymaae
ENSXCOG00000003220	-	72	96.429	ENSACLG00000000623	srsf11	86	96.429	Astatotilapia_calliptera
ENSXCOG00000003220	-	77	67.416	ENSBTAG00000007321	SREK1	90	70.000	Bos_taurus
ENSXCOG00000003220	-	88	63.725	ENSCJAG00000015950	SREK1	90	70.000	Callithrix_jacchus
ENSXCOG00000003220	-	71	73.171	ENSCAFG00020019449	-	90	68.889	Canis_lupus_dingo
ENSXCOG00000003220	-	71	82.927	ENSCAFG00020017255	-	81	78.261	Canis_lupus_dingo
ENSXCOG00000003220	-	70	72.840	ENSCHIG00000025052	-	90	70.000	Capra_hircus
ENSXCOG00000003220	-	77	77.528	ENSCHIG00000025295	SRSF11	76	78.889	Capra_hircus
ENSXCOG00000003220	-	77	67.416	ENSTSYG00000036957	SREK1	92	68.478	Carlito_syrichta
ENSXCOG00000003220	-	77	73.034	ENSTSYG00000033270	-	67	70.526	Carlito_syrichta
ENSXCOG00000003220	-	80	68.817	ENSCCAG00000020591	SREK1	90	70.000	Cebus_capucinus
ENSXCOG00000003220	-	77	67.416	ENSCATG00000031482	SREK1	92	68.478	Cercocebus_atys
ENSXCOG00000003220	-	72	77.108	ENSCPBG00000022430	-	79	75.281	Chrysemys_picta_bellii
ENSXCOG00000003220	-	86	65.000	ENSCPBG00000026866	SREK1	71	68.817	Chrysemys_picta_bellii
ENSXCOG00000003220	-	77	67.416	ENSCANG00000030421	SREK1	92	68.478	Colobus_angolensis_palliatus
ENSXCOG00000003220	-	86	63.000	ENSCSEG00000013934	-	91	69.136	Cynoglossus_semilaevis
ENSXCOG00000003220	-	74	66.279	ENSCVAG00000002404	-	70	66.279	Cyprinodon_variegatus
ENSXCOG00000003220	-	75	87.356	ENSDARG00000098574	srsf11	95	87.209	Danio_rerio
ENSXCOG00000003220	-	71	71.951	ENSDORG00000023160	-	69	69.231	Dipodomys_ordii
ENSXCOG00000003220	-	77	77.528	ENSEASG00005007847	SRSF11	77	79.545	Equus_asinus_asinus
ENSXCOG00000003220	-	71	73.171	ENSEASG00005006832	-	81	68.478	Equus_asinus_asinus
ENSXCOG00000003220	-	71	73.171	ENSECAG00000035731	-	80	68.478	Equus_caballus
ENSXCOG00000003220	-	70	71.605	ENSFCAG00000036884	-	92	66.304	Felis_catus
ENSXCOG00000003220	-	71	82.927	ENSFCAG00000034448	-	71	78.889	Felis_catus
ENSXCOG00000003220	-	76	65.909	ENSFHEG00000020959	-	68	65.909	Fundulus_heteroclitus
ENSXCOG00000003220	-	86	65.000	ENSGALG00000043541	SREK1	93	68.478	Gallus_gallus
ENSXCOG00000003220	-	73	67.059	ENSGAFG00000001732	-	70	67.059	Gambusia_affinis
ENSXCOG00000003220	-	72	83.333	ENSGAGG00000022411	-	82	83.333	Gopherus_agassizii
ENSXCOG00000003220	-	86	65.000	ENSGAGG00000006087	SREK1	71	68.817	Gopherus_agassizii
ENSXCOG00000003220	-	77	67.416	ENSGGOG00000004737	SREK1	92	68.478	Gorilla_gorilla
ENSXCOG00000003220	-	75	66.667	ENSHBUG00000007082	-	65	66.667	Haplochromis_burtoni
ENSXCOG00000003220	-	78	61.538	ENSHCOG00000017228	-	88	60.000	Hippocampus_comes
ENSXCOG00000003220	-	72	95.238	ENSHCOG00000016860	-	86	95.238	Hippocampus_comes
ENSXCOG00000003220	-	77	67.416	ENSSTOG00000008850	SREK1	90	70.000	Ictidomys_tridecemlineatus
ENSXCOG00000003220	-	71	70.732	ENSJJAG00000008846	-	71	67.391	Jaculus_jaculus
ENSXCOG00000003220	-	74	67.442	ENSLBEG00000022954	-	62	67.442	Labrus_bergylta
ENSXCOG00000003220	-	72	95.238	ENSLBEG00000024167	srsf11	86	95.238	Labrus_bergylta
ENSXCOG00000003220	-	77	67.416	ENSMFAG00000039823	SREK1	92	68.478	Macaca_fascicularis
ENSXCOG00000003220	-	77	67.416	ENSMMUG00000014586	SREK1	84	68.478	Macaca_mulatta
ENSXCOG00000003220	-	77	67.416	ENSMNEG00000030723	SREK1	92	68.478	Macaca_nemestrina
ENSXCOG00000003220	-	77	67.416	ENSMLEG00000039078	SREK1	92	68.478	Mandrillus_leucophaeus
ENSXCOG00000003220	-	72	93.976	ENSMAMG00000015002	-	78	93.976	Mastacembelus_armatus
ENSXCOG00000003220	-	82	60.825	ENSMAMG00000003099	-	94	60.825	Mastacembelus_armatus
ENSXCOG00000003220	-	78	63.333	ENSMZEG00005005707	-	70	63.333	Maylandia_zebra
ENSXCOG00000003220	-	77	67.416	ENSMICG00000034959	SREK1	90	70.000	Microcebus_murinus
ENSXCOG00000003220	-	72	93.976	ENSMMOG00000008877	-	82	93.976	Mola_mola
ENSXCOG00000003220	-	72	93.976	ENSMMOG00000016751	-	77	93.976	Mola_mola
ENSXCOG00000003220	-	80	59.140	ENSMALG00000017086	srek1	96	63.529	Monopterus_albus
ENSXCOG00000003220	-	72	96.429	ENSMALG00000016608	srsf11	86	96.429	Monopterus_albus
ENSXCOG00000003220	-	77	77.528	MGP_CAROLIEiJ_G0025767	Srsf11	82	82.927	Mus_caroli
ENSXCOG00000003220	-	85	70.707	ENSMUSG00000055436	Srsf11	81	82.927	Mus_musculus
ENSXCOG00000003220	-	77	77.528	MGP_PahariEiJ_G0027217	Srsf11	82	82.927	Mus_pahari
ENSXCOG00000003220	-	77	77.528	MGP_SPRETEiJ_G0026719	Srsf11	82	82.927	Mus_spretus
ENSXCOG00000003220	-	71	71.951	ENSNGAG00000014631	-	70	67.742	Nannospalax_galili
ENSXCOG00000003220	-	72	96.386	ENSNBRG00000020213	-	87	96.386	Neolamprologus_brichardi
ENSXCOG00000003220	-	75	66.667	ENSNBRG00000010656	-	65	66.667	Neolamprologus_brichardi
ENSXCOG00000003220	-	77	67.416	ENSNLEG00000003827	SREK1	92	68.478	Nomascus_leucogenys
ENSXCOG00000003220	-	71	73.171	ENSODEG00000016218	-	87	70.000	Octodon_degus
ENSXCOG00000003220	-	72	93.976	ENSORLG00000030366	-	74	93.976	Oryzias_latipes
ENSXCOG00000003220	-	72	64.286	ENSORLG00000002711	-	70	64.286	Oryzias_latipes
ENSXCOG00000003220	-	72	93.976	ENSORLG00020009393	-	74	93.976	Oryzias_latipes_hni
ENSXCOG00000003220	-	71	69.512	ENSORLG00020012815	-	68	67.778	Oryzias_latipes_hni
ENSXCOG00000003220	-	78	65.934	ENSORLG00015020455	-	72	65.934	Oryzias_latipes_hsok
ENSXCOG00000003220	-	72	93.976	ENSORLG00015009374	-	74	93.976	Oryzias_latipes_hsok
ENSXCOG00000003220	-	77	67.416	ENSPPAG00000031605	SREK1	84	68.478	Pan_paniscus
ENSXCOG00000003220	-	77	66.292	ENSPPRG00000024617	SREK1	92	66.304	Panthera_pardus
ENSXCOG00000003220	-	77	66.292	ENSPTIG00000006608	SREK1	92	66.304	Panthera_tigris_altaica
ENSXCOG00000003220	-	77	67.416	ENSPTRG00000016936	SREK1	92	68.478	Pan_troglodytes
ENSXCOG00000003220	-	77	67.416	ENSPANG00000008953	SREK1	92	68.478	Papio_anubis
ENSXCOG00000003220	-	72	90.361	ENSPKIG00000021576	-	87	90.361	Paramormyrops_kingsleyae
ENSXCOG00000003220	-	85	60.377	ENSPMGG00000017029	-	92	60.377	Periophthalmus_magnuspinnatus
ENSXCOG00000003220	-	74	91.860	ENSPMGG00000000954	-	81	91.860	Periophthalmus_magnuspinnatus
ENSXCOG00000003220	-	79	82.609	ENSPMGG00000005045	-	81	82.609	Periophthalmus_magnuspinnatus
ENSXCOG00000003220	-	80	61.000	ENSPLAG00000008818	-	74	61.000	Poecilia_latipinna
ENSXCOG00000003220	-	72	93.976	ENSPLAG00000009484	-	57	93.976	Poecilia_latipinna
ENSXCOG00000003220	-	80	61.000	ENSPLAG00000014609	-	74	61.000	Poecilia_latipinna
ENSXCOG00000003220	-	80	61.000	ENSPMEG00000006607	-	74	61.000	Poecilia_mexicana
ENSXCOG00000003220	-	80	61.000	ENSPMEG00000006824	-	74	61.000	Poecilia_mexicana
ENSXCOG00000003220	-	72	98.810	ENSPMEG00000018837	srsf11	69	98.810	Poecilia_mexicana
ENSXCOG00000003220	-	72	93.976	ENSPMEG00000023453	-	57	93.976	Poecilia_mexicana
ENSXCOG00000003220	-	74	67.442	ENSPREG00000019922	-	69	67.442	Poecilia_reticulata
ENSXCOG00000003220	-	77	67.416	ENSPCOG00000026230	SREK1	92	68.478	Propithecus_coquereli
ENSXCOG00000003220	-	75	66.667	ENSPNYG00000007178	-	65	66.667	Pundamilia_nyererei
ENSXCOG00000003220	-	77	77.528	ENSRBIG00000042971	SRSF11	69	78.889	Rhinopithecus_bieti
ENSXCOG00000003220	-	77	67.416	ENSRBIG00000033818	SREK1	92	68.478	Rhinopithecus_bieti
ENSXCOG00000003220	-	77	67.416	ENSRROG00000017210	SREK1	92	68.478	Rhinopithecus_roxellana
ENSXCOG00000003220	-	77	77.528	ENSSBOG00000033461	SRSF11	69	78.889	Saimiri_boliviensis_boliviensis
ENSXCOG00000003220	-	82	68.421	ENSSBOG00000031230	SREK1	90	70.000	Saimiri_boliviensis_boliviensis
ENSXCOG00000003220	-	75	86.207	ENSSFOG00015016086	-	78	86.207	Scleropages_formosus
ENSXCOG00000003220	-	73	67.059	ENSSDUG00000010395	-	84	67.059	Seriola_dumerili
ENSXCOG00000003220	-	72	93.976	ENSSLDG00000012105	-	77	93.976	Seriola_lalandi_dorsalis
ENSXCOG00000003220	-	72	95.238	ENSSLDG00000015477	-	86	95.238	Seriola_lalandi_dorsalis
ENSXCOG00000003220	-	73	67.059	ENSSLDG00000016285	-	84	67.059	Seriola_lalandi_dorsalis
ENSXCOG00000003220	-	87	81.188	ENSSPAG00000016483	-	79	81.188	Stegastes_partitus
ENSXCOG00000003220	-	73	68.235	ENSSPAG00000022310	-	86	68.235	Stegastes_partitus
ENSXCOG00000003220	-	73	64.706	ENSTRUG00000022058	-	69	64.706	Takifugu_rubripes
ENSXCOG00000003220	-	71	82.927	ENSUAMG00000008403	-	69	80.000	Ursus_americanus
ENSXCOG00000003220	-	70	72.840	ENSUAMG00000022662	-	84	67.391	Ursus_americanus
ENSXCOG00000003220	-	71	73.171	ENSVVUG00000005888	-	90	68.889	Vulpes_vulpes
ENSXCOG00000003220	-	72	93.976	ENSXMAG00000019180	SRSF11	55	93.976	Xiphophorus_maculatus
ENSXCOG00000003220	-	74	66.279	ENSXMAG00000028210	-	70	66.279	Xiphophorus_maculatus