EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003239 (Gene tree)
Gene ID: -
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 5004 bases
Position: chrKQ557224.1:17201456-17206459
Accession: ZDB-GENE-030131-2184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004125	MMR_HSR1	PF01926.23	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004170	-	1884	-	ENSXCOP00000004125	627 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003239's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003239's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003239	lsg1	66	32.093	ENSXCOG00000019185	gnl1	64	31.690

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003239	lsg1	99	65.315	ENSG00000041802	LSG1	89	79.114	Homo_sapiens
ENSXCOG00000003239	lsg1	100	78.931	ENSAPOG00000009694	lsg1	98	79.677	Acanthochromis_polyacanthus
ENSXCOG00000003239	lsg1	99	63.528	ENSAMEG00000009343	LSG1	97	63.247	Ailuropoda_melanoleuca
ENSXCOG00000003239	lsg1	98	80.899	ENSACIG00000012406	lsg1	97	80.806	Amphilophus_citrinellus
ENSXCOG00000003239	lsg1	100	78.571	ENSAOCG00000016066	lsg1	98	79.839	Amphiprion_ocellaris
ENSXCOG00000003239	lsg1	100	78.416	ENSAPEG00000003252	lsg1	98	79.839	Amphiprion_percula
ENSXCOG00000003239	lsg1	98	82.797	ENSATEG00000011794	lsg1	97	82.391	Anabas_testudineus
ENSXCOG00000003239	lsg1	94	61.477	ENSACAG00000004222	LSG1	99	61.146	Anolis_carolinensis
ENSXCOG00000003239	lsg1	99	64.211	ENSANAG00000021153	LSG1	97	64.806	Aotus_nancymaae
ENSXCOG00000003239	lsg1	100	82.435	ENSACLG00000000520	lsg1	98	82.148	Astatotilapia_calliptera
ENSXCOG00000003239	lsg1	99	72.248	ENSAMXG00000008271	lsg1	98	72.425	Astyanax_mexicanus
ENSXCOG00000003239	lsg1	99	65.038	ENSBTAG00000008461	LSG1	97	65.156	Bos_taurus
ENSXCOG00000003239	lsg1	84	33.147	WBGene00016907	C53H9.2	81	54.032	Caenorhabditis_elegans
ENSXCOG00000003239	lsg1	99	63.910	ENSCJAG00000013962	LSG1	97	64.651	Callithrix_jacchus
ENSXCOG00000003239	lsg1	95	64.912	ENSCAFG00000013445	LSG1	99	64.753	Canis_familiaris
ENSXCOG00000003239	lsg1	99	63.142	ENSCAFG00020002216	LSG1	99	64.526	Canis_lupus_dingo
ENSXCOG00000003239	lsg1	99	64.861	ENSCHIG00000015769	LSG1	97	65.719	Capra_hircus
ENSXCOG00000003239	lsg1	99	63.581	ENSTSYG00000001447	LSG1	97	64.110	Carlito_syrichta
ENSXCOG00000003239	lsg1	95	65.008	ENSCAPG00000009856	LSG1	99	64.754	Cavia_aperea
ENSXCOG00000003239	lsg1	99	64.643	ENSCCAG00000035744	LSG1	97	65.156	Cebus_capucinus
ENSXCOG00000003239	lsg1	99	65.315	ENSCATG00000042060	LSG1	97	64.706	Cercocebus_atys
ENSXCOG00000003239	lsg1	99	65.015	ENSCSAG00000008796	LSG1	89	65.131	Chlorocebus_sabaeus
ENSXCOG00000003239	lsg1	100	65.512	ENSCPBG00000015941	LSG1	81	65.688	Chrysemys_picta_bellii
ENSXCOG00000003239	lsg1	74	54.260	ENSCING00000007079	-	92	58.163	Ciona_intestinalis
ENSXCOG00000003239	lsg1	79	53.409	ENSCSAVG00000002514	-	96	53.629	Ciona_savignyi
ENSXCOG00000003239	lsg1	99	64.565	ENSCANG00000030709	LSG1	97	64.823	Colobus_angolensis_palliatus
ENSXCOG00000003239	lsg1	99	66.510	ENSCGRG00001019846	Lsg1	97	66.506	Cricetulus_griseus_chok1gshd
ENSXCOG00000003239	lsg1	99	64.319	ENSCGRG00000014617	Lsg1	97	64.835	Cricetulus_griseus_crigri
ENSXCOG00000003239	lsg1	98	76.646	ENSCSEG00000008522	lsg1	97	76.378	Cynoglossus_semilaevis
ENSXCOG00000003239	lsg1	97	85.945	ENSCVAG00000002484	lsg1	97	86.591	Cyprinodon_variegatus
ENSXCOG00000003239	lsg1	100	73.750	ENSDARG00000015352	lsg1	97	73.515	Danio_rerio
ENSXCOG00000003239	lsg1	99	63.650	ENSDNOG00000006224	LSG1	97	64.297	Dasypus_novemcinctus
ENSXCOG00000003239	lsg1	99	49.216	FBgn0266284	Ns3	95	49.671	Drosophila_melanogaster
ENSXCOG00000003239	lsg1	88	74.667	ENSETEG00000003888	LSG1	87	77.966	Echinops_telfairi
ENSXCOG00000003239	lsg1	88	55.330	ENSEBUG00000003119	lsg1	85	55.330	Eptatretus_burgeri
ENSXCOG00000003239	lsg1	99	64.275	ENSEASG00005000678	LSG1	97	64.417	Equus_asinus_asinus
ENSXCOG00000003239	lsg1	99	64.275	ENSECAG00000017659	LSG1	97	64.417	Equus_caballus
ENSXCOG00000003239	lsg1	87	59.483	ENSEEUG00000015217	LSG1	75	59.483	Erinaceus_europaeus
ENSXCOG00000003239	lsg1	100	72.403	ENSELUG00000023973	lsg1	98	72.337	Esox_lucius
ENSXCOG00000003239	lsg1	99	63.650	ENSFCAG00000024957	LSG1	97	64.142	Felis_catus
ENSXCOG00000003239	lsg1	92	62.662	ENSFALG00000007210	LSG1	94	62.662	Ficedula_albicollis
ENSXCOG00000003239	lsg1	99	64.396	ENSFDAG00000017373	LSG1	97	64.715	Fukomys_damarensis
ENSXCOG00000003239	lsg1	97	88.006	ENSFHEG00000003680	lsg1	97	88.006	Fundulus_heteroclitus
ENSXCOG00000003239	lsg1	98	68.146	ENSGMOG00000015834	lsg1	97	68.203	Gadus_morhua
ENSXCOG00000003239	lsg1	99	60.150	ENSGALG00000007058	LSG1	86	60.465	Gallus_gallus
ENSXCOG00000003239	lsg1	100	95.087	ENSGAFG00000015831	lsg1	100	95.087	Gambusia_affinis
ENSXCOG00000003239	lsg1	98	78.185	ENSGACG00000009323	lsg1	97	78.240	Gasterosteus_aculeatus
ENSXCOG00000003239	lsg1	99	64.608	ENSGGOG00000000520	LSG1	97	65.131	Gorilla_gorilla
ENSXCOG00000003239	lsg1	100	83.463	ENSHBUG00000005659	lsg1	98	83.200	Haplochromis_burtoni
ENSXCOG00000003239	lsg1	99	62.809	ENSHGLG00000017390	LSG1	97	63.150	Heterocephalus_glaber_female
ENSXCOG00000003239	lsg1	99	62.809	ENSHGLG00100018587	LSG1	97	63.150	Heterocephalus_glaber_male
ENSXCOG00000003239	lsg1	97	79.227	ENSHCOG00000016848	lsg1	97	79.227	Hippocampus_comes
ENSXCOG00000003239	lsg1	100	72.457	ENSIPUG00000008631	lsg1	97	73.151	Ictalurus_punctatus
ENSXCOG00000003239	lsg1	75	60.041	ENSSTOG00000010234	LSG1	92	60.765	Ictidomys_tridecemlineatus
ENSXCOG00000003239	lsg1	99	65.312	ENSJJAG00000015513	Lsg1	97	65.545	Jaculus_jaculus
ENSXCOG00000003239	lsg1	98	78.205	ENSKMAG00000009681	lsg1	97	78.261	Kryptolebias_marmoratus
ENSXCOG00000003239	lsg1	98	76.244	ENSLBEG00000024261	lsg1	97	77.419	Labrus_bergylta
ENSXCOG00000003239	lsg1	100	65.211	ENSLACG00000013399	LSG1	98	65.586	Latimeria_chalumnae
ENSXCOG00000003239	lsg1	98	69.552	ENSLOCG00000004918	lsg1	97	69.811	Lepisosteus_oculatus
ENSXCOG00000003239	lsg1	99	65.954	ENSLAFG00000012919	-	97	66.667	Loxodonta_africana
ENSXCOG00000003239	lsg1	99	65.165	ENSMFAG00000039903	LSG1	97	64.055	Macaca_fascicularis
ENSXCOG00000003239	lsg1	99	65.165	ENSMMUG00000010708	LSG1	97	65.284	Macaca_mulatta
ENSXCOG00000003239	lsg1	99	65.165	ENSMNEG00000031538	LSG1	97	64.055	Macaca_nemestrina
ENSXCOG00000003239	lsg1	99	65.165	ENSMLEG00000041184	LSG1	97	65.284	Mandrillus_leucophaeus
ENSXCOG00000003239	lsg1	100	77.778	ENSMAMG00000000470	lsg1	98	78.010	Mastacembelus_armatus
ENSXCOG00000003239	lsg1	100	83.463	ENSMZEG00005017865	lsg1	98	83.200	Maylandia_zebra
ENSXCOG00000003239	lsg1	88	61.591	ENSMGAG00000007050	LSG1	99	61.421	Meleagris_gallopavo
ENSXCOG00000003239	lsg1	91	66.897	ENSMAUG00000016976	Lsg1	90	67.082	Mesocricetus_auratus
ENSXCOG00000003239	lsg1	99	62.742	ENSMICG00000049087	LSG1	97	63.537	Microcebus_murinus
ENSXCOG00000003239	lsg1	99	64.869	ENSMOCG00000022136	Lsg1	97	65.561	Microtus_ochrogaster
ENSXCOG00000003239	lsg1	86	88.750	ENSMMOG00000008884	lsg1	97	75.121	Mola_mola
ENSXCOG00000003239	lsg1	99	55.436	ENSMODG00000019828	LSG1	97	55.140	Monodelphis_domestica
ENSXCOG00000003239	lsg1	99	65.432	MGP_CAROLIEiJ_G0020648	Lsg1	97	65.823	Mus_caroli
ENSXCOG00000003239	lsg1	99	65.278	ENSMUSG00000022538	Lsg1	97	65.506	Mus_musculus
ENSXCOG00000003239	lsg1	98	64.396	MGP_PahariEiJ_G0016352	Lsg1	97	65.409	Mus_pahari
ENSXCOG00000003239	lsg1	99	65.485	MGP_SPRETEiJ_G0021544	Lsg1	97	65.506	Mus_spretus
ENSXCOG00000003239	lsg1	99	64.947	ENSMPUG00000003734	LSG1	97	64.907	Mustela_putorius_furo
ENSXCOG00000003239	lsg1	99	63.664	ENSMLUG00000012548	LSG1	97	64.531	Myotis_lucifugus
ENSXCOG00000003239	lsg1	99	65.835	ENSNGAG00000021872	Lsg1	97	65.665	Nannospalax_galili
ENSXCOG00000003239	lsg1	99	64.511	ENSNLEG00000008293	LSG1	97	64.961	Nomascus_leucogenys
ENSXCOG00000003239	lsg1	68	72.165	ENSMEUG00000009041	-	85	72.165	Notamacropus_eugenii
ENSXCOG00000003239	lsg1	100	82.380	ENSONIG00000002635	lsg1	98	82.250	Oreochromis_niloticus
ENSXCOG00000003239	lsg1	95	65.974	ENSOANG00000012742	LSG1	99	65.815	Ornithorhynchus_anatinus
ENSXCOG00000003239	lsg1	99	63.677	ENSOCUG00000004817	LSG1	97	64.396	Oryctolagus_cuniculus
ENSXCOG00000003239	lsg1	98	80.452	ENSORLG00000007695	lsg1	97	81.240	Oryzias_latipes
ENSXCOG00000003239	lsg1	98	80.937	ENSORLG00020016286	lsg1	97	80.844	Oryzias_latipes_hni
ENSXCOG00000003239	lsg1	98	80.357	ENSORLG00015012025	lsg1	97	80.750	Oryzias_latipes_hsok
ENSXCOG00000003239	lsg1	98	77.939	ENSOMEG00000022379	lsg1	97	77.994	Oryzias_melastigma
ENSXCOG00000003239	lsg1	99	63.293	ENSOGAG00000003475	LSG1	97	63.932	Otolemur_garnettii
ENSXCOG00000003239	lsg1	99	64.188	ENSOARG00000020403	LSG1	97	64.431	Ovis_aries
ENSXCOG00000003239	lsg1	99	65.217	ENSPPAG00000029271	LSG1	97	65.438	Pan_paniscus
ENSXCOG00000003239	lsg1	99	62.687	ENSPPRG00000010281	LSG1	97	63.303	Panthera_pardus
ENSXCOG00000003239	lsg1	99	63.499	ENSPTIG00000010789	LSG1	97	64.142	Panthera_tigris_altaica
ENSXCOG00000003239	lsg1	99	65.067	ENSPTRG00000015760	LSG1	97	65.284	Pan_troglodytes
ENSXCOG00000003239	lsg1	99	64.715	ENSPANG00000018249	LSG1	97	63.594	Papio_anubis
ENSXCOG00000003239	lsg1	99	71.875	ENSPKIG00000002895	lsg1	97	73.312	Paramormyrops_kingsleyae
ENSXCOG00000003239	lsg1	96	60.465	ENSPSIG00000009821	LSG1	99	60.465	Pelodiscus_sinensis
ENSXCOG00000003239	lsg1	95	77.595	ENSPMGG00000000931	lsg1	100	77.595	Periophthalmus_magnuspinnatus
ENSXCOG00000003239	lsg1	99	63.470	ENSPEMG00000012082	-	97	63.707	Peromyscus_maniculatus_bairdii
ENSXCOG00000003239	lsg1	99	60.417	ENSPMAG00000007451	lsg1	98	60.518	Petromyzon_marinus
ENSXCOG00000003239	lsg1	98	62.234	ENSPCIG00000013890	LSG1	79	62.567	Phascolarctos_cinereus
ENSXCOG00000003239	lsg1	97	94.364	ENSPFOG00000021882	lsg1	97	93.881	Poecilia_formosa
ENSXCOG00000003239	lsg1	100	95.563	ENSPLAG00000019536	lsg1	100	95.563	Poecilia_latipinna
ENSXCOG00000003239	lsg1	97	92.937	ENSPMEG00000017281	lsg1	97	92.937	Poecilia_mexicana
ENSXCOG00000003239	lsg1	97	83.706	ENSPREG00000006048	lsg1	97	83.067	Poecilia_reticulata
ENSXCOG00000003239	lsg1	92	63.636	ENSPPYG00000014425	LSG1	97	63.833	Pongo_abelii
ENSXCOG00000003239	lsg1	89	72.000	ENSPCAG00000005511	LSG1	87	76.271	Procavia_capensis
ENSXCOG00000003239	lsg1	99	64.894	ENSPCOG00000012360	LSG1	97	64.798	Propithecus_coquereli
ENSXCOG00000003239	lsg1	100	82.435	ENSPNYG00000021994	lsg1	98	82.148	Pundamilia_nyererei
ENSXCOG00000003239	lsg1	100	73.053	ENSPNAG00000015533	lsg1	98	72.843	Pygocentrus_nattereri
ENSXCOG00000003239	lsg1	99	63.253	ENSRNOG00000001727	Lsg1	97	63.932	Rattus_norvegicus
ENSXCOG00000003239	lsg1	99	64.307	ENSRBIG00000029053	LSG1	97	65.062	Rhinopithecus_bieti
ENSXCOG00000003239	lsg1	99	64.307	ENSRROG00000037702	LSG1	97	65.062	Rhinopithecus_roxellana
ENSXCOG00000003239	lsg1	82	41.002	YGL099W	LSG1	70	42.604	Saccharomyces_cerevisiae
ENSXCOG00000003239	lsg1	99	64.060	ENSSBOG00000034938	LSG1	97	64.961	Saimiri_boliviensis_boliviensis
ENSXCOG00000003239	lsg1	77	61.154	ENSSHAG00000003487	LSG1	100	60.962	Sarcophilus_harrisii
ENSXCOG00000003239	lsg1	98	72.436	ENSSFOG00015008955	lsg1	97	72.464	Scleropages_formosus
ENSXCOG00000003239	lsg1	98	81.905	ENSSDUG00000004622	lsg1	98	81.818	Seriola_dumerili
ENSXCOG00000003239	lsg1	98	80.000	ENSSLDG00000010869	lsg1	97	79.904	Seriola_lalandi_dorsalis
ENSXCOG00000003239	lsg1	83	65.089	ENSSARG00000012981	LSG1	80	63.559	Sorex_araneus
ENSXCOG00000003239	lsg1	100	63.623	ENSSPUG00000016347	LSG1	97	63.281	Sphenodon_punctatus
ENSXCOG00000003239	lsg1	100	79.524	ENSSPAG00000005508	lsg1	98	80.619	Stegastes_partitus
ENSXCOG00000003239	lsg1	99	64.198	ENSSSCG00000011827	LSG1	97	64.082	Sus_scrofa
ENSXCOG00000003239	lsg1	88	59.835	ENSTGUG00000009068	LSG1	100	60.233	Taeniopygia_guttata
ENSXCOG00000003239	lsg1	97	75.890	ENSTRUG00000017380	lsg1	97	75.890	Takifugu_rubripes
ENSXCOG00000003239	lsg1	97	78.135	ENSTNIG00000015570	lsg1	97	78.778	Tetraodon_nigroviridis
ENSXCOG00000003239	lsg1	99	59.939	ENSTTRG00000000559	LSG1	97	59.718	Tursiops_truncatus
ENSXCOG00000003239	lsg1	99	63.323	ENSUAMG00000012454	LSG1	97	63.957	Ursus_americanus
ENSXCOG00000003239	lsg1	99	63.323	ENSUMAG00000000855	LSG1	97	63.957	Ursus_maritimus
ENSXCOG00000003239	lsg1	95	60.606	ENSVPAG00000012400	LSG1	99	60.606	Vicugna_pacos
ENSXCOG00000003239	lsg1	95	64.516	ENSVVUG00000008956	LSG1	97	65.428	Vulpes_vulpes
ENSXCOG00000003239	lsg1	100	65.745	ENSXETG00000003451	lsg1	98	66.023	Xenopus_tropicalis
ENSXCOG00000003239	lsg1	100	95.392	ENSXMAG00000005536	lsg1	100	95.392	Xiphophorus_maculatus