EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003302 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 6780 bases
Position: chrKQ557202.1:7451367-7458146
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004204	DND1_DSRM	PF14709.7	4.2e-26	1	1
ENSXCOP00000004204	RRM_1	PF00076.22	6e-40	1	3
ENSXCOP00000004204	RRM_1	PF00076.22	6e-40	2	3
ENSXCOP00000004204	RRM_1	PF00076.22	6e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004250	-	1809	-	ENSXCOP00000004204	602 (aa)	-	UPI000C6EC4E8

Gene Model

Click here to download ENSXCOG00000003302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003302's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003302	a1cf	56	67.059	ENSXCOG00000000780	rbm47	58	70.627

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003302	a1cf	100	77.907	ENSG00000148584	A1CF	100	86.634	Homo_sapiens
ENSXCOG00000003302	a1cf	100	86.047	ENSAPOG00000008259	a1cf	100	85.880	Acanthochromis_polyacanthus
ENSXCOG00000003302	a1cf	100	75.738	ENSAMEG00000000523	A1CF	100	75.574	Ailuropoda_melanoleuca
ENSXCOG00000003302	a1cf	100	88.633	ENSACIG00000008632	a1cf	100	90.115	Amphilophus_citrinellus
ENSXCOG00000003302	a1cf	100	87.583	ENSAOCG00000023744	a1cf	100	88.614	Amphiprion_ocellaris
ENSXCOG00000003302	a1cf	100	86.275	ENSAPEG00000009537	a1cf	100	87.296	Amphiprion_percula
ENSXCOG00000003302	a1cf	100	91.089	ENSATEG00000013720	a1cf	100	91.254	Anabas_testudineus
ENSXCOG00000003302	a1cf	100	76.885	ENSAPLG00000002964	A1CF	100	75.902	Anas_platyrhynchos
ENSXCOG00000003302	a1cf	100	77.741	ENSACAG00000015269	A1CF	100	77.741	Anolis_carolinensis
ENSXCOG00000003302	a1cf	100	78.904	ENSANAG00000019974	A1CF	100	77.575	Aotus_nancymaae
ENSXCOG00000003302	a1cf	100	85.997	ENSACLG00000017428	a1cf	100	86.656	Astatotilapia_calliptera
ENSXCOG00000003302	a1cf	100	76.221	ENSAMXG00000018180	a1cf	100	76.221	Astyanax_mexicanus
ENSXCOG00000003302	a1cf	100	78.405	ENSBTAG00000021195	A1CF	100	77.741	Bos_taurus
ENSXCOG00000003302	a1cf	100	77.705	ENSCJAG00000005045	A1CF	100	76.393	Callithrix_jacchus
ENSXCOG00000003302	a1cf	100	76.393	ENSCAFG00000015581	A1CF	100	75.410	Canis_familiaris
ENSXCOG00000003302	a1cf	100	76.393	ENSCAFG00020026421	A1CF	98	82.333	Canis_lupus_dingo
ENSXCOG00000003302	a1cf	100	77.869	ENSCHIG00000020411	A1CF	100	77.213	Capra_hircus
ENSXCOG00000003302	a1cf	94	77.993	ENSTSYG00000001755	A1CF	100	77.113	Carlito_syrichta
ENSXCOG00000003302	a1cf	100	73.178	ENSCAPG00000017386	A1CF	100	75.080	Cavia_aperea
ENSXCOG00000003302	a1cf	100	76.557	ENSCPOG00000009807	A1CF	100	75.410	Cavia_porcellus
ENSXCOG00000003302	a1cf	100	77.705	ENSCCAG00000018168	A1CF	100	76.230	Cebus_capucinus
ENSXCOG00000003302	a1cf	100	78.073	ENSCATG00000043715	A1CF	100	77.076	Cercocebus_atys
ENSXCOG00000003302	a1cf	100	76.393	ENSCLAG00000010424	A1CF	100	75.410	Chinchilla_lanigera
ENSXCOG00000003302	a1cf	100	76.885	ENSCSAG00000007032	A1CF	100	75.902	Chlorocebus_sabaeus
ENSXCOG00000003302	a1cf	98	75.294	ENSCHOG00000009089	A1CF	98	74.286	Choloepus_hoffmanni
ENSXCOG00000003302	a1cf	100	77.377	ENSCPBG00000026464	A1CF	100	76.066	Chrysemys_picta_bellii
ENSXCOG00000003302	a1cf	100	77.049	ENSCANG00000038032	A1CF	100	76.066	Colobus_angolensis_palliatus
ENSXCOG00000003302	a1cf	100	76.557	ENSCGRG00001017413	A1cf	100	75.738	Cricetulus_griseus_chok1gshd
ENSXCOG00000003302	a1cf	100	75.902	ENSCGRG00000017332	A1cf	100	75.082	Cricetulus_griseus_crigri
ENSXCOG00000003302	a1cf	100	84.779	ENSCSEG00000002361	a1cf	100	84.779	Cynoglossus_semilaevis
ENSXCOG00000003302	a1cf	100	95.545	ENSCVAG00000010520	a1cf	100	95.545	Cyprinodon_variegatus
ENSXCOG00000003302	a1cf	100	83.223	ENSDARG00000002968	a1cf	100	83.056	Danio_rerio
ENSXCOG00000003302	a1cf	100	76.885	ENSDNOG00000002829	A1CF	100	76.066	Dasypus_novemcinctus
ENSXCOG00000003302	a1cf	82	84.420	ENSETEG00000012527	A1CF	81	84.420	Echinops_telfairi
ENSXCOG00000003302	a1cf	100	77.087	ENSEASG00005012924	A1CF	100	76.105	Equus_asinus_asinus
ENSXCOG00000003302	a1cf	100	76.759	ENSECAG00000010424	A1CF	100	75.777	Equus_caballus
ENSXCOG00000003302	a1cf	78	68.220	ENSEEUG00000000013	A1CF	97	68.062	Erinaceus_europaeus
ENSXCOG00000003302	a1cf	100	81.967	ENSELUG00000003159	a1cf	100	81.967	Esox_lucius
ENSXCOG00000003302	a1cf	100	77.243	ENSFCAG00000011179	A1CF	100	76.578	Felis_catus
ENSXCOG00000003302	a1cf	100	78.571	ENSFALG00000013183	A1CF	100	77.409	Ficedula_albicollis
ENSXCOG00000003302	a1cf	100	78.073	ENSFDAG00000019371	A1CF	100	77.076	Fukomys_damarensis
ENSXCOG00000003302	a1cf	100	87.954	ENSFHEG00000019652	a1cf	96	95.312	Fundulus_heteroclitus
ENSXCOG00000003302	a1cf	100	78.982	ENSGMOG00000018943	a1cf	100	77.833	Gadus_morhua
ENSXCOG00000003302	a1cf	96	76.239	ENSGALG00000003765	A1CF	96	75.563	Gallus_gallus
ENSXCOG00000003302	a1cf	100	90.864	ENSGAFG00000014868	a1cf	100	91.362	Gambusia_affinis
ENSXCOG00000003302	a1cf	100	86.557	ENSGACG00000010241	a1cf	100	86.885	Gasterosteus_aculeatus
ENSXCOG00000003302	a1cf	96	76.239	ENSGAGG00000016508	A1CF	98	74.872	Gopherus_agassizii
ENSXCOG00000003302	a1cf	100	76.885	ENSGGOG00000009670	A1CF	100	75.902	Gorilla_gorilla
ENSXCOG00000003302	a1cf	100	88.797	ENSHBUG00000021959	a1cf	100	90.280	Haplochromis_burtoni
ENSXCOG00000003302	a1cf	100	77.213	ENSHGLG00000008955	A1CF	100	76.393	Heterocephalus_glaber_female
ENSXCOG00000003302	a1cf	100	76.557	ENSHGLG00100000518	A1CF	100	75.738	Heterocephalus_glaber_male
ENSXCOG00000003302	a1cf	100	74.919	ENSHCOG00000017669	a1cf	100	76.861	Hippocampus_comes
ENSXCOG00000003302	a1cf	88	83.704	ENSIPUG00000010367	a1cf	95	83.704	Ictalurus_punctatus
ENSXCOG00000003302	a1cf	100	88.817	ENSKMAG00000006568	a1cf	100	89.627	Kryptolebias_marmoratus
ENSXCOG00000003302	a1cf	99	88.436	ENSLBEG00000020994	a1cf	99	88.274	Labrus_bergylta
ENSXCOG00000003302	a1cf	100	79.402	ENSLACG00000008061	A1CF	100	78.405	Latimeria_chalumnae
ENSXCOG00000003302	a1cf	100	82.295	ENSLOCG00000006302	a1cf	100	81.311	Lepisosteus_oculatus
ENSXCOG00000003302	a1cf	100	77.213	ENSLAFG00000015462	A1CF	100	76.885	Loxodonta_africana
ENSXCOG00000003302	a1cf	100	78.073	ENSMFAG00000035948	A1CF	100	77.076	Macaca_fascicularis
ENSXCOG00000003302	a1cf	100	78.073	ENSMMUG00000007077	A1CF	100	77.076	Macaca_mulatta
ENSXCOG00000003302	a1cf	100	77.907	ENSMNEG00000031454	A1CF	100	76.910	Macaca_nemestrina
ENSXCOG00000003302	a1cf	100	77.049	ENSMLEG00000037223	A1CF	100	76.066	Mandrillus_leucophaeus
ENSXCOG00000003302	a1cf	100	89.386	ENSMAMG00000010402	a1cf	100	89.718	Mastacembelus_armatus
ENSXCOG00000003302	a1cf	100	86.230	ENSMZEG00005013245	a1cf	100	86.230	Maylandia_zebra
ENSXCOG00000003302	a1cf	100	76.268	ENSMGAG00000001507	A1CF	100	75.123	Meleagris_gallopavo
ENSXCOG00000003302	a1cf	100	76.066	ENSMAUG00000007422	A1cf	100	75.410	Mesocricetus_auratus
ENSXCOG00000003302	a1cf	100	77.318	ENSMICG00000003377	A1CF	100	77.152	Microcebus_murinus
ENSXCOG00000003302	a1cf	100	76.230	ENSMOCG00000021536	A1cf	100	75.246	Microtus_ochrogaster
ENSXCOG00000003302	a1cf	100	77.063	ENSMMOG00000009422	a1cf	100	77.393	Mola_mola
ENSXCOG00000003302	a1cf	89	79.550	ENSMODG00000016478	A1CF	97	79.174	Monodelphis_domestica
ENSXCOG00000003302	a1cf	100	80.363	ENSMALG00000012992	a1cf	100	80.198	Monopterus_albus
ENSXCOG00000003302	a1cf	100	77.243	MGP_CAROLIEiJ_G0022873	A1cf	100	76.246	Mus_caroli
ENSXCOG00000003302	a1cf	100	77.243	ENSMUSG00000052595	A1cf	99	82.338	Mus_musculus
ENSXCOG00000003302	a1cf	100	76.412	MGP_PahariEiJ_G0014366	A1cf	100	75.415	Mus_pahari
ENSXCOG00000003302	a1cf	100	77.076	MGP_SPRETEiJ_G0023792	A1cf	100	76.080	Mus_spretus
ENSXCOG00000003302	a1cf	100	71.803	ENSMPUG00000016971	A1CF	100	70.656	Mustela_putorius_furo
ENSXCOG00000003302	a1cf	100	76.393	ENSMLUG00000016071	A1CF	100	75.902	Myotis_lucifugus
ENSXCOG00000003302	a1cf	100	77.049	ENSNGAG00000015136	A1cf	100	75.902	Nannospalax_galili
ENSXCOG00000003302	a1cf	100	89.292	ENSNBRG00000001712	a1cf	100	90.774	Neolamprologus_brichardi
ENSXCOG00000003302	a1cf	100	77.541	ENSNLEG00000012028	A1CF	100	76.557	Nomascus_leucogenys
ENSXCOG00000003302	a1cf	94	78.169	ENSMEUG00000015909	A1CF	100	77.113	Notamacropus_eugenii
ENSXCOG00000003302	a1cf	88	69.832	ENSOPRG00000010667	A1CF	100	67.442	Ochotona_princeps
ENSXCOG00000003302	a1cf	100	89.621	ENSONIG00000019105	a1cf	100	90.115	Oreochromis_niloticus
ENSXCOG00000003302	a1cf	78	79.193	ENSOANG00000007360	A1CF	99	79.193	Ornithorhynchus_anatinus
ENSXCOG00000003302	a1cf	100	77.243	ENSOCUG00000011587	A1CF	100	76.246	Oryctolagus_cuniculus
ENSXCOG00000003302	a1cf	100	84.202	ENSORLG00000013342	a1cf	100	84.390	Oryzias_latipes
ENSXCOG00000003302	a1cf	100	86.829	ENSORLG00020000586	a1cf	100	87.154	Oryzias_latipes_hni
ENSXCOG00000003302	a1cf	100	86.829	ENSORLG00015018569	a1cf	100	87.154	Oryzias_latipes_hsok
ENSXCOG00000003302	a1cf	100	88.576	ENSOMEG00000013531	a1cf	100	88.576	Oryzias_melastigma
ENSXCOG00000003302	a1cf	100	75.902	ENSOGAG00000012884	A1CF	100	75.738	Otolemur_garnettii
ENSXCOG00000003302	a1cf	100	77.541	ENSOARG00000013695	A1CF	100	76.885	Ovis_aries
ENSXCOG00000003302	a1cf	95	76.511	ENSPPAG00000028115	A1CF	99	79.249	Pan_paniscus
ENSXCOG00000003302	a1cf	100	76.230	ENSPPRG00000012180	A1CF	100	75.574	Panthera_pardus
ENSXCOG00000003302	a1cf	100	76.230	ENSPTIG00000021223	A1CF	100	75.574	Panthera_tigris_altaica
ENSXCOG00000003302	a1cf	100	77.907	ENSPTRG00000002508	A1CF	100	76.910	Pan_troglodytes
ENSXCOG00000003302	a1cf	100	78.073	ENSPANG00000021988	A1CF	100	77.076	Papio_anubis
ENSXCOG00000003302	a1cf	100	80.820	ENSPKIG00000025176	a1cf	100	80.820	Paramormyrops_kingsleyae
ENSXCOG00000003302	a1cf	100	78.239	ENSPSIG00000010318	A1CF	100	77.076	Pelodiscus_sinensis
ENSXCOG00000003302	a1cf	98	71.453	ENSPMGG00000013359	a1cf	99	71.357	Periophthalmus_magnuspinnatus
ENSXCOG00000003302	a1cf	100	76.721	ENSPEMG00000015021	A1cf	100	75.738	Peromyscus_maniculatus_bairdii
ENSXCOG00000003302	a1cf	100	77.741	ENSPCIG00000002175	A1CF	100	77.409	Phascolarctos_cinereus
ENSXCOG00000003302	a1cf	100	96.580	ENSPFOG00000007437	-	100	96.580	Poecilia_formosa
ENSXCOG00000003302	a1cf	100	96.580	ENSPFOG00000006683	a1cf	100	96.580	Poecilia_formosa
ENSXCOG00000003302	a1cf	100	97.690	ENSPLAG00000000026	a1cf	100	97.690	Poecilia_latipinna
ENSXCOG00000003302	a1cf	100	97.690	ENSPLAG00000001210	-	100	97.690	Poecilia_latipinna
ENSXCOG00000003302	a1cf	100	87.459	ENSPMEG00000000921	a1cf	100	88.119	Poecilia_mexicana
ENSXCOG00000003302	a1cf	100	86.319	ENSPMEG00000015529	-	100	86.971	Poecilia_mexicana
ENSXCOG00000003302	a1cf	100	96.091	ENSPREG00000016298	a1cf	100	96.091	Poecilia_reticulata
ENSXCOG00000003302	a1cf	100	78.571	ENSPPYG00000002819	A1CF	100	77.575	Pongo_abelii
ENSXCOG00000003302	a1cf	80	62.213	ENSPCAG00000006463	A1CF	79	62.213	Procavia_capensis
ENSXCOG00000003302	a1cf	100	76.230	ENSPCOG00000024172	A1CF	100	75.902	Propithecus_coquereli
ENSXCOG00000003302	a1cf	100	87.967	ENSPNYG00000017944	a1cf	100	89.431	Pundamilia_nyererei
ENSXCOG00000003302	a1cf	100	83.775	ENSPNAG00000007704	a1cf	100	83.940	Pygocentrus_nattereri
ENSXCOG00000003302	a1cf	100	77.575	ENSRNOG00000033195	A1cf	100	76.578	Rattus_norvegicus
ENSXCOG00000003302	a1cf	100	71.732	ENSRBIG00000042892	A1CF	100	75.048	Rhinopithecus_bieti
ENSXCOG00000003302	a1cf	100	77.049	ENSRROG00000041398	A1CF	100	76.066	Rhinopithecus_roxellana
ENSXCOG00000003302	a1cf	100	77.705	ENSSBOG00000021930	A1CF	100	76.983	Saimiri_boliviensis_boliviensis
ENSXCOG00000003302	a1cf	100	77.575	ENSSHAG00000005096	A1CF	100	76.578	Sarcophilus_harrisii
ENSXCOG00000003302	a1cf	100	83.278	ENSSFOG00015011774	a1cf	100	83.444	Scleropages_formosus
ENSXCOG00000003302	a1cf	100	87.338	ENSSMAG00000013271	a1cf	100	87.825	Scophthalmus_maximus
ENSXCOG00000003302	a1cf	100	89.344	ENSSDUG00000013930	a1cf	100	89.344	Seriola_dumerili
ENSXCOG00000003302	a1cf	100	83.721	ENSSLDG00000004290	a1cf	100	83.721	Seriola_lalandi_dorsalis
ENSXCOG00000003302	a1cf	95	69.877	ENSSARG00000005940	A1CF	95	69.877	Sorex_araneus
ENSXCOG00000003302	a1cf	95	75.904	ENSSPUG00000006797	A1CF	95	74.486	Sphenodon_punctatus
ENSXCOG00000003302	a1cf	100	77.541	ENSSSCG00000010431	A1CF	100	76.721	Sus_scrofa
ENSXCOG00000003302	a1cf	100	77.905	ENSTGUG00000005090	A1CF	100	76.923	Taeniopygia_guttata
ENSXCOG00000003302	a1cf	100	86.179	ENSTRUG00000001982	a1cf	100	86.829	Takifugu_rubripes
ENSXCOG00000003302	a1cf	100	85.552	ENSTNIG00000003580	a1cf	100	85.552	Tetraodon_nigroviridis
ENSXCOG00000003302	a1cf	95	74.081	ENSTTRG00000013190	A1CF	94	73.380	Tursiops_truncatus
ENSXCOG00000003302	a1cf	100	77.575	ENSUAMG00000020065	A1CF	100	76.412	Ursus_americanus
ENSXCOG00000003302	a1cf	100	76.066	ENSUMAG00000011162	A1CF	100	75.082	Ursus_maritimus
ENSXCOG00000003302	a1cf	87	75.475	ENSVPAG00000006130	A1CF	86	74.335	Vicugna_pacos
ENSXCOG00000003302	a1cf	100	77.741	ENSVVUG00000002504	A1CF	100	76.578	Vulpes_vulpes
ENSXCOG00000003302	a1cf	100	72.131	ENSXETG00000006611	a1cf	100	71.967	Xenopus_tropicalis
ENSXCOG00000003302	a1cf	100	98.689	ENSXMAG00000016703	a1cf	100	98.689	Xiphophorus_maculatus