EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003428 (Gene tree)
Gene ID: -
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: RAB42%2C member RAS oncogene family a
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 5451 bases
Position: chrKQ557205.1:23700121-23705571
Accession: ZDB-GENE-040426-1983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004343	MMR_HSR1	PF01926.23	5.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004395	-	657	-	ENSXCOP00000004343	218 (aa)	-	UPI0003B3D0EC

Gene Model

Click here to download ENSXCOG00000003428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003428	rab42a	83	40.556	ENSXCOG00000004227	rab25b	85	40.556
ENSXCOG00000003428	rab42a	84	41.530	ENSXCOG00000004226	rab11al	84	41.530
ENSXCOG00000003428	rab42a	78	34.118	ENSXCOG00000007650	rras	85	34.118
ENSXCOG00000003428	rab42a	78	43.529	ENSXCOG00000010770	-	67	43.529
ENSXCOG00000003428	rab42a	85	41.398	ENSXCOG00000009190	-	84	41.398
ENSXCOG00000003428	rab42a	58	46.825	ENSXCOG00000009194	-	91	46.825
ENSXCOG00000003428	rab42a	100	54.128	ENSXCOG00000006807	rab39bb	100	54.128
ENSXCOG00000003428	rab42a	74	38.788	ENSXCOG00000009094	rab9b	81	38.788
ENSXCOG00000003428	rab42a	78	42.690	ENSXCOG00000020125	rab25a	93	42.857
ENSXCOG00000003428	rab42a	75	35.976	ENSXCOG00000020121	rab5aa	75	35.976
ENSXCOG00000003428	rab42a	72	38.217	ENSXCOG00000015802	RAB41	73	38.217
ENSXCOG00000003428	rab42a	75	37.805	ENSXCOG00000016788	rab5c	75	37.805
ENSXCOG00000003428	rab42a	75	39.881	ENSXCOG00000020575	RAB9A	75	39.881
ENSXCOG00000003428	rab42a	78	34.682	ENSXCOG00000016370	RAB29	83	34.682
ENSXCOG00000003428	rab42a	72	38.509	ENSXCOG00000019054	rab9a	72	38.509
ENSXCOG00000003428	rab42a	75	40.237	ENSXCOG00000013344	rab33a	61	40.116
ENSXCOG00000003428	rab42a	78	43.275	ENSXCOG00000010695	zgc:171927	83	43.275
ENSXCOG00000003428	rab42a	78	41.279	ENSXCOG00000019310	rab12	70	41.279
ENSXCOG00000003428	rab42a	67	42.568	ENSXCOG00000018683	zgc:101559	63	42.568
ENSXCOG00000003428	rab42a	74	34.337	ENSXCOG00000019921	rab7a	79	34.337
ENSXCOG00000003428	rab42a	72	39.490	ENSXCOG00000006259	rab6a	75	39.490
ENSXCOG00000003428	rab42a	94	37.681	ENSXCOG00000001357	rab11a	78	37.681
ENSXCOG00000003428	rab42a	61	37.500	ENSXCOG00000011229	rras2	81	36.842
ENSXCOG00000003428	rab42a	85	41.398	ENSXCOG00000008042	-	84	41.398
ENSXCOG00000003428	rab42a	72	38.854	ENSXCOG00000002232	rab6bb	75	38.854
ENSXCOG00000003428	rab42a	73	32.500	ENSXCOG00000020508	kras	85	32.317
ENSXCOG00000003428	rab42a	72	34.615	ENSXCOG00000011864	rab23	70	33.929
ENSXCOG00000003428	rab42a	65	38.365	ENSXCOG00000003192	-	74	38.365
ENSXCOG00000003428	rab42a	75	36.585	ENSXCOG00000006300	-	73	36.585
ENSXCOG00000003428	rab42a	78	42.690	ENSXCOG00000019533	rab13	90	42.690
ENSXCOG00000003428	rab42a	68	33.784	ENSXCOG00000019281	rheb	80	33.108
ENSXCOG00000003428	rab42a	67	43.421	ENSXCOG00000012032	-	68	43.421
ENSXCOG00000003428	rab42a	67	44.595	ENSXCOG00000000469	rab33ba	62	44.595
ENSXCOG00000003428	rab42a	100	39.450	ENSXCOG00000013842	rab1ab	100	39.450
ENSXCOG00000003428	rab42a	86	60.000	ENSXCOG00000008410	si:dkey-34d22.5	86	60.000
ENSXCOG00000003428	rab42a	69	34.437	ENSXCOG00000020608	hrasb	85	33.537
ENSXCOG00000003428	rab42a	78	32.370	ENSXCOG00000009541	rab34a	66	32.370
ENSXCOG00000003428	rab42a	75	34.146	ENSXCOG00000016452	rab22a	84	34.146

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003428	rab42a	100	95.413	ENSAPOG00000009188	rab42a	100	95.413	Acanthochromis_polyacanthus
ENSXCOG00000003428	rab42a	100	95.413	ENSACIG00000003102	rab42a	100	95.413	Amphilophus_citrinellus
ENSXCOG00000003428	rab42a	100	96.330	ENSAOCG00000012921	rab42a	83	96.330	Amphiprion_ocellaris
ENSXCOG00000003428	rab42a	100	96.330	ENSAPEG00000007713	rab42a	83	96.330	Amphiprion_percula
ENSXCOG00000003428	rab42a	100	93.578	ENSATEG00000009052	rab42a	100	93.578	Anabas_testudineus
ENSXCOG00000003428	rab42a	100	94.495	ENSACLG00000007514	rab42a	100	94.495	Astatotilapia_calliptera
ENSXCOG00000003428	rab42a	100	88.991	ENSAMXG00000032729	rab42a	100	88.991	Astyanax_mexicanus
ENSXCOG00000003428	rab42a	100	92.202	ENSCSEG00000010582	rab42a	100	92.202	Cynoglossus_semilaevis
ENSXCOG00000003428	rab42a	100	90.367	ENSDARG00000034215	rab42a	100	90.367	Danio_rerio
ENSXCOG00000003428	rab42a	90	49.239	ENSDARG00000102580	CU571310.1	93	49.239	Danio_rerio
ENSXCOG00000003428	rab42a	100	88.991	ENSELUG00000010345	rab42a	100	88.991	Esox_lucius
ENSXCOG00000003428	rab42a	100	98.624	ENSFHEG00000013106	rab42a	100	98.624	Fundulus_heteroclitus
ENSXCOG00000003428	rab42a	100	99.541	ENSGAFG00000002141	rab42a	100	99.541	Gambusia_affinis
ENSXCOG00000003428	rab42a	100	94.495	ENSHBUG00000015126	rab42a	82	94.495	Haplochromis_burtoni
ENSXCOG00000003428	rab42a	100	85.780	ENSIPUG00000011376	rab42a	100	85.780	Ictalurus_punctatus
ENSXCOG00000003428	rab42a	100	96.789	ENSKMAG00000007267	rab42a	100	96.789	Kryptolebias_marmoratus
ENSXCOG00000003428	rab42a	100	94.954	ENSLBEG00000001193	rab42a	100	94.954	Labrus_bergylta
ENSXCOG00000003428	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSXCOG00000003428	rab42a	100	81.193	ENSLOCG00000003453	rab42a	100	81.193	Lepisosteus_oculatus
ENSXCOG00000003428	rab42a	100	50.228	ENSLOCG00000015825	-	99	50.228	Lepisosteus_oculatus
ENSXCOG00000003428	rab42a	100	96.330	ENSMAMG00000002296	rab42a	100	96.330	Mastacembelus_armatus
ENSXCOG00000003428	rab42a	100	94.495	ENSMZEG00005012460	rab42a	82	94.495	Maylandia_zebra
ENSXCOG00000003428	rab42a	100	92.202	ENSMMOG00000014358	rab42a	100	92.202	Mola_mola
ENSXCOG00000003428	rab42a	100	94.954	ENSNBRG00000021487	rab42a	82	94.954	Neolamprologus_brichardi
ENSXCOG00000003428	rab42a	100	95.872	ENSORLG00000022335	rab42a	100	95.872	Oryzias_latipes
ENSXCOG00000003428	rab42a	100	95.872	ENSORLG00020013895	rab42a	100	95.872	Oryzias_latipes_hni
ENSXCOG00000003428	rab42a	100	95.872	ENSORLG00015004273	rab42a	100	95.872	Oryzias_latipes_hsok
ENSXCOG00000003428	rab42a	100	95.872	ENSOMEG00000020418	rab42a	100	95.872	Oryzias_melastigma
ENSXCOG00000003428	rab42a	100	77.169	ENSPKIG00000021215	-	100	77.169	Paramormyrops_kingsleyae
ENSXCOG00000003428	rab42a	89	48.454	ENSPKIG00000015234	-	93	48.454	Paramormyrops_kingsleyae
ENSXCOG00000003428	rab42a	90	96.447	ENSPMGG00000024112	rab42a	90	96.447	Periophthalmus_magnuspinnatus
ENSXCOG00000003428	rab42a	100	98.624	ENSPFOG00000004838	rab42a	82	98.624	Poecilia_formosa
ENSXCOG00000003428	rab42a	100	99.083	ENSPLAG00000005628	rab42a	100	99.083	Poecilia_latipinna
ENSXCOG00000003428	rab42a	100	98.624	ENSPMEG00000019497	rab42a	100	98.624	Poecilia_mexicana
ENSXCOG00000003428	rab42a	100	99.541	ENSPREG00000013962	rab42a	100	99.541	Poecilia_reticulata
ENSXCOG00000003428	rab42a	100	94.495	ENSPNYG00000010325	rab42a	82	94.495	Pundamilia_nyererei
ENSXCOG00000003428	rab42a	100	88.532	ENSPNAG00000016567	rab42a	100	88.532	Pygocentrus_nattereri
ENSXCOG00000003428	rab42a	100	83.945	ENSSFOG00015020732	rab42a	100	83.945	Scleropages_formosus
ENSXCOG00000003428	rab42a	100	45.662	ENSSFOG00015016000	-	97	45.662	Scleropages_formosus
ENSXCOG00000003428	rab42a	100	94.037	ENSSMAG00000020311	rab42a	100	94.037	Scophthalmus_maximus
ENSXCOG00000003428	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSXCOG00000003428	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSXCOG00000003428	rab42a	100	96.330	ENSSPAG00000016167	rab42a	100	96.330	Stegastes_partitus
ENSXCOG00000003428	rab42a	100	95.413	ENSTRUG00000010224	rab42a	100	95.413	Takifugu_rubripes
ENSXCOG00000003428	rab42a	100	100.000	ENSXMAG00000028376	rab42a	100	100.000	Xiphophorus_maculatus