EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003499 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 4713 bases
Position: chrKQ557202.1:8844582-8849294
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	1	6
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	2	6
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	3	6
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	4	6
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	5	6
ENSXCOP00000004432	zf-C2H2	PF00096.26	3.1e-31	6	6
ENSXCOP00000004432	zf-met	PF12874.7	3.2e-12	1	3
ENSXCOP00000004432	zf-met	PF12874.7	3.2e-12	2	3
ENSXCOP00000004432	zf-met	PF12874.7	3.2e-12	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004485	-	1146	-	ENSXCOP00000004432	381 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003499's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003499's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003499	-	51	47.368	ENSXCOG00000018315	-	88	47.368
ENSXCOG00000003499	-	54	41.000	ENSXCOG00000008567	prdm5	77	41.000
ENSXCOG00000003499	-	95	44.444	ENSXCOG00000009777	-	68	44.444
ENSXCOG00000003499	-	62	39.310	ENSXCOG00000009772	-	92	39.310
ENSXCOG00000003499	-	54	49.756	ENSXCOG00000007139	-	77	49.756
ENSXCOG00000003499	-	53	49.080	ENSXCOG00000010259	-	54	49.080
ENSXCOG00000003499	-	52	48.333	ENSXCOG00000009674	-	70	48.333
ENSXCOG00000003499	-	53	42.246	ENSXCOG00000009992	zbtb47b	83	42.246
ENSXCOG00000003499	-	90	44.724	ENSXCOG00000007406	-	98	49.032
ENSXCOG00000003499	-	67	51.485	ENSXCOG00000009003	-	96	51.185
ENSXCOG00000003499	-	94	41.497	ENSXCOG00000003441	-	91	41.497
ENSXCOG00000003499	-	68	31.944	ENSXCOG00000002714	-	92	32.512
ENSXCOG00000003499	-	70	41.379	ENSXCOG00000013306	-	83	41.379
ENSXCOG00000003499	-	70	46.269	ENSXCOG00000007957	-	92	46.269
ENSXCOG00000003499	-	52	37.956	ENSXCOG00000010422	-	61	36.364
ENSXCOG00000003499	-	54	44.554	ENSXCOG00000007076	-	99	44.554
ENSXCOG00000003499	-	65	48.020	ENSXCOG00000003093	-	96	48.020
ENSXCOG00000003499	-	52	35.172	ENSXCOG00000019675	scrt1b	51	35.172
ENSXCOG00000003499	-	78	44.828	ENSXCOG00000009781	-	61	44.828
ENSXCOG00000003499	-	68	37.186	ENSXCOG00000009597	ZNF319	86	37.186
ENSXCOG00000003499	-	55	48.125	ENSXCOG00000006614	-	92	48.125
ENSXCOG00000003499	-	54	46.798	ENSXCOG00000016307	-	85	46.798
ENSXCOG00000003499	-	71	36.986	ENSXCOG00000006461	-	71	36.986
ENSXCOG00000003499	-	54	53.488	ENSXCOG00000016117	-	97	53.488
ENSXCOG00000003499	-	83	41.558	ENSXCOG00000017871	zgc:113343	70	43.386
ENSXCOG00000003499	-	64	55.172	ENSXCOG00000003431	-	92	55.172
ENSXCOG00000003499	-	65	40.097	ENSXCOG00000003435	-	92	40.097
ENSXCOG00000003499	-	70	37.132	ENSXCOG00000003438	-	90	37.132
ENSXCOG00000003499	-	53	35.514	ENSXCOG00000015084	snai2	51	38.636
ENSXCOG00000003499	-	52	45.882	ENSXCOG00000009186	-	89	45.882
ENSXCOG00000003499	-	64	48.259	ENSXCOG00000019443	-	98	50.926
ENSXCOG00000003499	-	53	48.276	ENSXCOG00000010950	si:dkey-210j14.3	79	48.276
ENSXCOG00000003499	-	96	44.059	ENSXCOG00000011725	-	97	44.025
ENSXCOG00000003499	-	53	42.254	ENSXCOG00000020768	-	66	42.254
ENSXCOG00000003499	-	53	52.448	ENSXCOG00000008083	-	93	48.276
ENSXCOG00000003499	-	93	33.333	ENSXCOG00000009997	-	98	34.146
ENSXCOG00000003499	-	62	49.746	ENSXCOG00000002473	-	93	49.746
ENSXCOG00000003499	-	95	51.485	ENSXCOG00000016860	-	96	51.471
ENSXCOG00000003499	-	63	43.787	ENSXCOG00000003468	-	95	47.525
ENSXCOG00000003499	-	57	49.239	ENSXCOG00000001116	-	89	49.495
ENSXCOG00000003499	-	94	49.718	ENSXCOG00000007937	-	94	49.718
ENSXCOG00000003499	-	86	49.505	ENSXCOG00000019492	-	94	49.505
ENSXCOG00000003499	-	54	46.226	ENSXCOG00000019149	znf526	65	46.226
ENSXCOG00000003499	-	53	38.728	ENSXCOG00000009768	-	75	38.728
ENSXCOG00000003499	-	59	49.664	ENSXCOG00000015312	-	86	49.664
ENSXCOG00000003499	-	95	51.777	ENSXCOG00000013004	-	96	51.777
ENSXCOG00000003499	-	90	44.388	ENSXCOG00000008116	-	99	44.388
ENSXCOG00000003499	-	68	45.259	ENSXCOG00000019382	-	80	45.259
ENSXCOG00000003499	-	70	50.505	ENSXCOG00000002898	-	90	50.505
ENSXCOG00000003499	-	55	45.205	ENSXCOG00000007413	-	61	45.205
ENSXCOG00000003499	-	55	45.813	ENSXCOG00000007414	-	92	45.813
ENSXCOG00000003499	-	90	44.970	ENSXCOG00000010576	-	90	44.970
ENSXCOG00000003499	-	76	53.731	ENSXCOG00000003451	-	92	53.731
ENSXCOG00000003499	-	54	48.322	ENSXCOG00000008978	-	92	48.322
ENSXCOG00000003499	-	71	50.505	ENSXCOG00000007376	-	99	50.505
ENSXCOG00000003499	-	52	47.337	ENSXCOG00000007941	-	80	47.337
ENSXCOG00000003499	-	56	45.685	ENSXCOG00000007945	-	96	45.685
ENSXCOG00000003499	-	54	36.232	ENSXCOG00000007499	zbtb41	67	36.232
ENSXCOG00000003499	-	62	50.990	ENSXCOG00000017328	-	84	50.990
ENSXCOG00000003499	-	71	51.724	ENSXCOG00000001200	-	99	47.945
ENSXCOG00000003499	-	67	49.500	ENSXCOG00000007529	-	99	51.546
ENSXCOG00000003499	-	61	49.510	ENSXCOG00000015441	-	89	49.510
ENSXCOG00000003499	-	57	58.824	ENSXCOG00000008062	-	95	58.824
ENSXCOG00000003499	-	64	49.367	ENSXCOG00000010507	-	54	49.367
ENSXCOG00000003499	-	83	43.498	ENSXCOG00000003538	-	97	49.231
ENSXCOG00000003499	-	95	46.847	ENSXCOG00000012458	-	98	46.847
ENSXCOG00000003499	-	94	39.801	ENSXCOG00000009798	-	97	42.640
ENSXCOG00000003499	-	65	41.000	ENSXCOG00000002869	-	58	41.040
ENSXCOG00000003499	-	96	48.366	ENSXCOG00000007994	-	99	48.366
ENSXCOG00000003499	-	54	45.000	ENSXCOG00000018253	-	91	45.000
ENSXCOG00000003499	-	53	50.000	ENSXCOG00000006553	-	85	50.000
ENSXCOG00000003499	-	94	46.341	ENSXCOG00000003484	-	86	36.975
ENSXCOG00000003499	-	55	51.000	ENSXCOG00000002512	-	75	51.000
ENSXCOG00000003499	-	57	42.276	ENSXCOG00000019377	-	93	42.276
ENSXCOG00000003499	-	79	43.860	ENSXCOG00000000036	znf341	62	31.953
ENSXCOG00000003499	-	71	38.843	ENSXCOG00000010948	-	81	38.843
ENSXCOG00000003499	-	84	37.563	ENSXCOG00000018117	znf710b	55	37.563
ENSXCOG00000003499	-	58	34.091	ENSXCOG00000013066	-	87	34.746
ENSXCOG00000003499	-	94	44.660	ENSXCOG00000016567	-	91	44.660
ENSXCOG00000003499	-	66	46.763	ENSXCOG00000009665	-	93	46.763
ENSXCOG00000003499	-	52	43.836	ENSXCOG00000009668	-	69	43.836
ENSXCOG00000003499	-	95	45.631	ENSXCOG00000003472	-	97	50.336
ENSXCOG00000003499	-	52	40.909	ENSXCOG00000003001	-	85	40.909
ENSXCOG00000003499	-	55	52.632	ENSXCOG00000006951	-	95	52.632
ENSXCOG00000003499	-	67	41.631	ENSXCOG00000007396	-	96	41.631
ENSXCOG00000003499	-	71	51.667	ENSXCOG00000012064	-	71	51.667
ENSXCOG00000003499	-	57	44.375	ENSXCOG00000019481	-	83	44.375
ENSXCOG00000003499	-	53	48.333	ENSXCOG00000019482	-	83	48.333
ENSXCOG00000003499	-	80	48.039	ENSXCOG00000019484	-	94	48.039
ENSXCOG00000003499	-	91	48.619	ENSXCOG00000012921	-	95	53.416
ENSXCOG00000003499	-	55	44.444	ENSXCOG00000012924	-	93	44.444
ENSXCOG00000003499	-	56	46.328	ENSXCOG00000001226	-	89	46.328
ENSXCOG00000003499	-	53	40.994	ENSXCOG00000009794	-	75	40.994
ENSXCOG00000003499	-	90	39.545	ENSXCOG00000003532	-	100	49.425
ENSXCOG00000003499	-	71	46.193	ENSXCOG00000003530	-	94	46.970
ENSXCOG00000003499	-	71	49.315	ENSXCOG00000003537	-	97	49.315
ENSXCOG00000003499	-	71	46.405	ENSXCOG00000019401	-	94	46.405
ENSXCOG00000003499	-	97	40.969	ENSXCOG00000009785	-	65	41.791
ENSXCOG00000003499	-	54	53.125	ENSXCOG00000000254	-	58	53.125
ENSXCOG00000003499	-	59	44.355	ENSXCOG00000015947	-	91	40.566
ENSXCOG00000003499	-	68	50.000	ENSXCOG00000010567	-	90	44.633
ENSXCOG00000003499	-	63	47.093	ENSXCOG00000010488	-	68	47.093
ENSXCOG00000003499	-	59	49.261	ENSXCOG00000000354	-	75	49.261
ENSXCOG00000003499	-	66	49.020	ENSXCOG00000007368	-	94	49.020
ENSXCOG00000003499	-	57	38.333	ENSXCOG00000020769	-	92	38.333
ENSXCOG00000003499	-	54	52.632	ENSXCOG00000007979	-	67	52.632
ENSXCOG00000003499	-	94	47.009	ENSXCOG00000014361	-	96	47.009
ENSXCOG00000003499	-	56	36.264	ENSXCOG00000008003	-	55	36.264
ENSXCOG00000003499	-	94	46.193	ENSXCOG00000003896	-	89	46.193
ENSXCOG00000003499	-	60	49.500	ENSXCOG00000019457	-	94	49.500
ENSXCOG00000003499	-	51	50.943	ENSXCOG00000007420	-	98	50.943
ENSXCOG00000003499	-	74	46.939	ENSXCOG00000001292	-	92	46.939
ENSXCOG00000003499	-	59	48.276	ENSXCOG00000000528	-	85	48.276
ENSXCOG00000003499	-	51	57.143	ENSXCOG00000015435	-	79	57.143
ENSXCOG00000003499	-	57	45.882	ENSXCOG00000011372	-	85	45.882
ENSXCOG00000003499	-	57	41.593	ENSXCOG00000001645	si:dkey-89b17.4	68	37.662
ENSXCOG00000003499	-	55	52.000	ENSXCOG00000002857	-	94	52.000
ENSXCOG00000003499	-	56	43.868	ENSXCOG00000007987	-	76	43.868
ENSXCOG00000003499	-	88	54.545	ENSXCOG00000007981	-	90	49.045
ENSXCOG00000003499	-	92	48.611	ENSXCOG00000003493	-	97	48.611
ENSXCOG00000003499	-	70	39.394	ENSXCOG00000013787	-	64	39.394
ENSXCOG00000003499	-	93	37.226	ENSXCOG00000013870	-	73	38.587
ENSXCOG00000003499	-	94	46.250	ENSXCOG00000014363	-	97	46.250
ENSXCOG00000003499	-	89	38.318	ENSXCOG00000014360	-	95	38.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003499	-	55	45.771	ENSDARG00000103495	zgc:173714	98	45.771	Danio_rerio
ENSXCOG00000003499	-	61	46.798	ENSDARG00000098986	znf1040	68	46.798	Danio_rerio
ENSXCOG00000003499	-	57	52.941	ENSDARG00000089715	si:cabz01054394.7	78	52.941	Danio_rerio
ENSXCOG00000003499	-	63	46.701	ENSDARG00000091477	znf1066	94	46.701	Danio_rerio
ENSXCOG00000003499	-	56	45.918	ENSDARG00000100001	znf1096	87	45.918	Danio_rerio
ENSXCOG00000003499	-	61	50.888	ENSDARG00000092938	znf1047	89	50.888	Danio_rerio
ENSXCOG00000003499	-	61	50.296	ENSDARG00000102600	CABZ01003344.1	89	50.296	Danio_rerio
ENSXCOG00000003499	-	61	47.716	ENSDARG00000104407	BX649453.1	88	47.716	Danio_rerio
ENSXCOG00000003499	-	53	46.316	ENSDARG00000114437	zgc:173705	76	46.316	Danio_rerio
ENSXCOG00000003499	-	60	42.667	ENSDARG00000105137	zgc:173705	87	42.667	Danio_rerio
ENSXCOG00000003499	-	54	45.320	ENSDARG00000103244	CABZ01081752.3	76	45.320	Danio_rerio
ENSXCOG00000003499	-	78	53.254	ENSDARG00000091393	si:ch211-161m3.6	89	53.254	Danio_rerio
ENSXCOG00000003499	-	60	45.408	ENSDARG00000112725	si:dkey-22h13.2	88	45.408	Danio_rerio
ENSXCOG00000003499	-	56	45.918	ENSDARG00000115450	CABZ01012382.1	82	45.918	Danio_rerio
ENSXCOG00000003499	-	54	47.291	ENSDARG00000091994	znf1048	68	47.291	Danio_rerio
ENSXCOG00000003499	-	56	45.918	ENSDARG00000109381	CU457778.2	87	45.918	Danio_rerio
ENSXCOG00000003499	-	55	50.000	ENSDARG00000075417	zgc:175107	78	45.545	Danio_rerio
ENSXCOG00000003499	-	95	47.059	ENSFHEG00000001395	-	87	34.010	Fundulus_heteroclitus
ENSXCOG00000003499	-	95	35.200	ENSFHEG00000021020	-	84	35.200	Fundulus_heteroclitus
ENSXCOG00000003499	-	54	53.846	ENSGMOG00000020024	-	100	53.846	Gadus_morhua
ENSXCOG00000003499	-	71	38.843	ENSGAFG00000013839	-	54	38.843	Gambusia_affinis
ENSXCOG00000003499	-	57	43.275	ENSKMAG00000014002	si:ch211-79k12.2	80	43.275	Kryptolebias_marmoratus
ENSXCOG00000003499	-	97	37.755	ENSKMAG00000011441	-	81	38.863	Kryptolebias_marmoratus
ENSXCOG00000003499	-	96	31.755	ENSORLG00000012434	znf1064	81	33.144	Oryzias_latipes
ENSXCOG00000003499	-	72	35.537	ENSORLG00015013828	-	68	35.537	Oryzias_latipes_hsok
ENSXCOG00000003499	-	64	47.674	ENSPFOG00000005998	-	66	33.766	Poecilia_formosa
ENSXCOG00000003499	-	96	49.010	ENSPFOG00000022423	-	81	49.010	Poecilia_formosa
ENSXCOG00000003499	-	96	47.938	ENSPFOG00000003366	-	97	47.938	Poecilia_formosa
ENSXCOG00000003499	-	63	40.828	ENSPLAG00000023537	-	83	40.828	Poecilia_latipinna
ENSXCOG00000003499	-	95	47.414	ENSPLAG00000009861	-	71	44.253	Poecilia_latipinna
ENSXCOG00000003499	-	93	53.153	ENSPLAG00000010547	-	99	53.153	Poecilia_latipinna
ENSXCOG00000003499	-	96	47.403	ENSPREG00000005015	-	94	45.946	Poecilia_reticulata
ENSXCOG00000003499	-	59	37.405	ENSSPAG00000017203	-	61	37.405	Stegastes_partitus
ENSXCOG00000003499	-	52	54.098	ENSTRUG00000022969	-	66	54.098	Takifugu_rubripes
ENSXCOG00000003499	-	91	44.886	ENSXETG00000031310	-	69	44.041	Xenopus_tropicalis
ENSXCOG00000003499	-	93	35.580	ENSXMAG00000024816	-	93	35.040	Xiphophorus_maculatus