EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003524 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5160 bases
Position: chrKQ557224.1:18422377-18427536
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004466	RRM_1	PF00076.22	2.6e-43	1	4
ENSXCOP00000004466	RRM_1	PF00076.22	2.6e-43	2	4
ENSXCOP00000004466	RRM_1	PF00076.22	2.6e-43	3	4
ENSXCOP00000004466	RRM_1	PF00076.22	2.6e-43	4	4
ENSXCOP00000004461	RRM_1	PF00076.22	1.1e-42	1	3
ENSXCOP00000004461	RRM_1	PF00076.22	1.1e-42	2	3
ENSXCOP00000004461	RRM_1	PF00076.22	1.1e-42	3	3
ENSXCOP00000004464	RRM_1	PF00076.22	1.5e-39	1	4
ENSXCOP00000004464	RRM_1	PF00076.22	1.5e-39	2	4
ENSXCOP00000004464	RRM_1	PF00076.22	1.5e-39	3	4
ENSXCOP00000004464	RRM_1	PF00076.22	1.5e-39	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004519	-	1179	-	ENSXCOP00000004466	392 (aa)	-	-
ENSXCOT00000004517	-	981	-	ENSXCOP00000004464	326 (aa)	-	-
ENSXCOT00000004514	-	1545	-	ENSXCOP00000004461	514 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003524's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003524	ncl	82	32.593	ENSXCOG00000017066	pabpc1a	51	32.593
ENSXCOG00000003524	ncl	82	30.075	ENSXCOG00000005459	pabpc1l	60	30.075
ENSXCOG00000003524	ncl	90	32.456	ENSXCOG00000007369	-	89	35.263

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003524	ncl	90	34.454	ENSAPOG00000014534	-	67	35.476	Acanthochromis_polyacanthus
ENSXCOG00000003524	ncl	88	65.600	ENSAPOG00000023888	ncl	58	65.333	Acanthochromis_polyacanthus
ENSXCOG00000003524	ncl	87	59.894	ENSACIG00000013234	ncl	64	48.889	Amphilophus_citrinellus
ENSXCOG00000003524	ncl	88	66.400	ENSAOCG00000003133	ncl	54	66.133	Amphiprion_ocellaris
ENSXCOG00000003524	ncl	87	33.430	ENSAOCG00000014792	-	61	34.884	Amphiprion_ocellaris
ENSXCOG00000003524	ncl	87	33.724	ENSAPEG00000013612	-	60	35.401	Amphiprion_percula
ENSXCOG00000003524	ncl	88	66.400	ENSAPEG00000002769	ncl	54	66.133	Amphiprion_percula
ENSXCOG00000003524	ncl	96	38.584	ENSATEG00000019862	-	82	32.822	Anabas_testudineus
ENSXCOG00000003524	ncl	89	65.600	ENSATEG00000013343	ncl	57	50.633	Anabas_testudineus
ENSXCOG00000003524	ncl	88	48.691	ENSAPLG00000012897	-	69	42.901	Anas_platyrhynchos
ENSXCOG00000003524	ncl	87	51.181	ENSACAG00000001006	-	52	43.750	Anolis_carolinensis
ENSXCOG00000003524	ncl	87	60.897	ENSACLG00000026031	ncl	87	60.645	Astatotilapia_calliptera
ENSXCOG00000003524	ncl	85	57.756	ENSAMXG00000001647	ncl	81	48.188	Astyanax_mexicanus
ENSXCOG00000003524	ncl	83	34.940	ENSCHIG00000003401	-	51	34.050	Capra_hircus
ENSXCOG00000003524	ncl	83	34.316	ENSCHIG00000012665	-	54	37.435	Capra_hircus
ENSXCOG00000003524	ncl	83	53.074	ENSCPBG00000016444	-	56	45.031	Chrysemys_picta_bellii
ENSXCOG00000003524	ncl	88	88.148	ENSCSEG00000015089	ncl	71	49.631	Cynoglossus_semilaevis
ENSXCOG00000003524	ncl	88	68.464	ENSCVAG00000012600	ncl	58	53.274	Cyprinodon_variegatus
ENSXCOG00000003524	ncl	88	60.533	ENSDARG00000002710	ncl	79	59.740	Danio_rerio
ENSXCOG00000003524	ncl	83	42.761	ENSDNOG00000040257	-	61	40.793	Dasypus_novemcinctus
ENSXCOG00000003524	ncl	82	37.883	ENSDNOG00000031611	-	64	39.377	Dasypus_novemcinctus
ENSXCOG00000003524	ncl	92	37.299	ENSEBUG00000016173	ncl	50	36.095	Eptatretus_burgeri
ENSXCOG00000003524	ncl	94	39.368	ENSELUG00000022826	-	80	41.019	Esox_lucius
ENSXCOG00000003524	ncl	88	59.103	ENSELUG00000006033	ncl	59	47.975	Esox_lucius
ENSXCOG00000003524	ncl	96	44.533	ENSFALG00000007592	-	59	41.104	Ficedula_albicollis
ENSXCOG00000003524	ncl	89	64.267	ENSFHEG00000018000	ncl	61	51.070	Fundulus_heteroclitus
ENSXCOG00000003524	ncl	85	54.341	ENSGMOG00000001341	ncl	59	44.681	Gadus_morhua
ENSXCOG00000003524	ncl	86	50.804	ENSGALG00000032930	NCL	60	42.901	Gallus_gallus
ENSXCOG00000003524	ncl	99	76.798	ENSGAFG00000015375	ncl	52	71.279	Gambusia_affinis
ENSXCOG00000003524	ncl	85	60.104	ENSGACG00000008970	ncl	63	48.824	Gasterosteus_aculeatus
ENSXCOG00000003524	ncl	85	50.213	ENSGAGG00000013330	-	56	45.342	Gopherus_agassizii
ENSXCOG00000003524	ncl	85	61.702	ENSHBUG00000006869	ncl	54	47.785	Haplochromis_burtoni
ENSXCOG00000003524	ncl	85	64.879	ENSHCOG00000010234	ncl	54	52.336	Hippocampus_comes
ENSXCOG00000003524	ncl	83	56.209	ENSIPUG00000024556	ncl	78	56.579	Ictalurus_punctatus
ENSXCOG00000003524	ncl	88	65.508	ENSKMAG00000008111	ncl	56	50.448	Kryptolebias_marmoratus
ENSXCOG00000003524	ncl	87	36.311	ENSLBEG00000014278	-	79	37.535	Labrus_bergylta
ENSXCOG00000003524	ncl	88	63.588	ENSLBEG00000019073	ncl	58	50.000	Labrus_bergylta
ENSXCOG00000003524	ncl	89	37.990	ENSLBEG00000007915	-	66	38.619	Labrus_bergylta
ENSXCOG00000003524	ncl	87	52.997	ENSLACG00000009328	ncl	59	42.769	Latimeria_chalumnae
ENSXCOG00000003524	ncl	84	43.590	ENSLACG00000022167	-	80	39.159	Latimeria_chalumnae
ENSXCOG00000003524	ncl	99	51.989	ENSLOCG00000004828	ncl	53	47.910	Lepisosteus_oculatus
ENSXCOG00000003524	ncl	92	34.844	ENSMAMG00000003479	-	69	36.719	Mastacembelus_armatus
ENSXCOG00000003524	ncl	85	61.702	ENSMZEG00005017438	ncl	54	47.785	Maylandia_zebra
ENSXCOG00000003524	ncl	86	50.161	ENSMGAG00000008147	-	83	44.891	Meleagris_gallopavo
ENSXCOG00000003524	ncl	85	63.462	ENSMMOG00000008553	ncl	84	64.610	Mola_mola
ENSXCOG00000003524	ncl	87	46.203	ENSMODG00000002470	-	56	41.846	Monodelphis_domestica
ENSXCOG00000003524	ncl	88	58.133	ENSMALG00000014827	ncl	52	48.214	Monopterus_albus
ENSXCOG00000003524	ncl	71	47.541	ENSMPUG00000001663	-	57	48.789	Mustela_putorius_furo
ENSXCOG00000003524	ncl	84	58.681	ENSNBRG00000000146	-	86	58.681	Neolamprologus_brichardi
ENSXCOG00000003524	ncl	84	58.681	ENSNBRG00000001232	ncl	82	58.681	Neolamprologus_brichardi
ENSXCOG00000003524	ncl	88	47.507	ENSMEUG00000012335	-	58	42.547	Notamacropus_eugenii
ENSXCOG00000003524	ncl	85	61.702	ENSONIG00000012508	ncl	54	47.785	Oreochromis_niloticus
ENSXCOG00000003524	ncl	86	36.011	ENSONIG00000010631	-	97	37.255	Oreochromis_niloticus
ENSXCOG00000003524	ncl	87	48.571	ENSOANG00000008732	-	64	42.388	Ornithorhynchus_anatinus
ENSXCOG00000003524	ncl	74	43.333	ENSORLG00000004645	-	86	33.514	Oryzias_latipes
ENSXCOG00000003524	ncl	87	65.495	ENSORLG00000007055	ncl	53	51.553	Oryzias_latipes
ENSXCOG00000003524	ncl	88	66.133	ENSORLG00020017943	ncl	53	51.553	Oryzias_latipes_hni
ENSXCOG00000003524	ncl	75	42.675	ENSORLG00020003497	-	74	32.982	Oryzias_latipes_hni
ENSXCOG00000003524	ncl	99	64.738	ENSORLG00015013815	ncl	99	66.479	Oryzias_latipes_hsok
ENSXCOG00000003524	ncl	74	44.667	ENSORLG00015006613	-	77	33.245	Oryzias_latipes_hsok
ENSXCOG00000003524	ncl	75	43.919	ENSOMEG00000015864	-	63	45.038	Oryzias_melastigma
ENSXCOG00000003524	ncl	88	65.867	ENSOMEG00000020786	ncl	51	67.553	Oryzias_melastigma
ENSXCOG00000003524	ncl	85	60.695	ENSPKIG00000002604	ncl	54	48.810	Paramormyrops_kingsleyae
ENSXCOG00000003524	ncl	83	51.592	ENSPSIG00000002361	-	57	44.304	Pelodiscus_sinensis
ENSXCOG00000003524	ncl	100	59.569	ENSPMGG00000004709	ncl	93	49.867	Periophthalmus_magnuspinnatus
ENSXCOG00000003524	ncl	87	45.886	ENSPCIG00000003293	-	56	42.154	Phascolarctos_cinereus
ENSXCOG00000003524	ncl	99	75.870	ENSPFOG00000024205	ncl	58	58.667	Poecilia_formosa
ENSXCOG00000003524	ncl	99	76.334	ENSPLAG00000024026	ncl	58	58.333	Poecilia_latipinna
ENSXCOG00000003524	ncl	99	75.694	ENSPMEG00000006000	ncl	72	56.000	Poecilia_mexicana
ENSXCOG00000003524	ncl	85	61.702	ENSPNYG00000020494	ncl	55	47.785	Pundamilia_nyererei
ENSXCOG00000003524	ncl	85	54.497	ENSPNAG00000006192	ncl	53	43.598	Pygocentrus_nattereri
ENSXCOG00000003524	ncl	88	37.000	ENSSHAG00000007489	-	50	37.600	Sarcophilus_harrisii
ENSXCOG00000003524	ncl	87	44.586	ENSSHAG00000002702	-	60	45.103	Sarcophilus_harrisii
ENSXCOG00000003524	ncl	99	60.000	ENSSFOG00015008583	ncl	58	47.950	Scleropages_formosus
ENSXCOG00000003524	ncl	94	36.390	ENSSFOG00015013153	-	76	36.604	Scleropages_formosus
ENSXCOG00000003524	ncl	87	37.437	ENSSMAG00000007582	-	61	38.845	Scophthalmus_maximus
ENSXCOG00000003524	ncl	86	62.334	ENSSMAG00000021241	ncl	56	50.154	Scophthalmus_maximus
ENSXCOG00000003524	ncl	99	66.947	ENSSDUG00000006128	ncl	99	55.191	Seriola_dumerili
ENSXCOG00000003524	ncl	92	36.342	ENSSDUG00000010922	-	77	35.938	Seriola_dumerili
ENSXCOG00000003524	ncl	92	36.754	ENSSLDG00000015784	-	71	35.561	Seriola_lalandi_dorsalis
ENSXCOG00000003524	ncl	99	63.212	ENSSLDG00000002012	ncl	55	62.953	Seriola_lalandi_dorsalis
ENSXCOG00000003524	ncl	95	48.485	ENSSPUG00000008244	-	61	42.815	Sphenodon_punctatus
ENSXCOG00000003524	ncl	75	62.411	ENSSPAG00000002637	ncl	82	62.544	Stegastes_partitus
ENSXCOG00000003524	ncl	93	34.758	ENSSPAG00000001859	-	61	35.844	Stegastes_partitus
ENSXCOG00000003524	ncl	83	51.118	ENSTGUG00000009782	-	61	43.252	Taeniopygia_guttata
ENSXCOG00000003524	ncl	87	59.283	ENSTRUG00000008185	ncl	67	53.829	Takifugu_rubripes
ENSXCOG00000003524	ncl	88	58.410	ENSTNIG00000012186	ncl	65	47.910	Tetraodon_nigroviridis
ENSXCOG00000003524	ncl	84	50.529	ENSXETG00000009517	ncl	55	46.006	Xenopus_tropicalis
ENSXCOG00000003524	ncl	99	80.000	ENSXMAG00000005914	ncl	73	57.662	Xiphophorus_maculatus