EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000003608 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 14863 bases
Position: chrKQ557205.1:26168212-26183074
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004571	CPSF_A	PF03178.15	4.9e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004627	-	4287	-	ENSXCOP00000004571	1428 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003608	cpsf1	100	77.263	ENSG00000071894	CPSF1	100	77.402	Homo_sapiens
ENSXCOG00000003608	cpsf1	100	88.043	ENSAPOG00000019621	cpsf1	100	88.315	Acanthochromis_polyacanthus
ENSXCOG00000003608	cpsf1	96	77.433	ENSAMEG00000005557	CPSF1	99	77.217	Ailuropoda_melanoleuca
ENSXCOG00000003608	cpsf1	100	87.908	ENSACIG00000006112	cpsf1	100	87.978	Amphilophus_citrinellus
ENSXCOG00000003608	cpsf1	100	88.536	ENSAOCG00000007120	cpsf1	100	88.398	Amphiprion_ocellaris
ENSXCOG00000003608	cpsf1	100	89.379	ENSAPEG00000005755	cpsf1	100	89.241	Amphiprion_percula
ENSXCOG00000003608	cpsf1	100	87.313	ENSATEG00000011097	cpsf1	100	87.720	Anabas_testudineus
ENSXCOG00000003608	cpsf1	93	73.887	ENSACAG00000009655	CPSF1	100	73.739	Anolis_carolinensis
ENSXCOG00000003608	cpsf1	100	77.593	ENSANAG00000036514	CPSF1	100	77.801	Aotus_nancymaae
ENSXCOG00000003608	cpsf1	100	86.844	ENSACLG00000012231	cpsf1	100	86.774	Astatotilapia_calliptera
ENSXCOG00000003608	cpsf1	100	78.234	ENSAMXG00000008485	cpsf1	100	78.025	Astyanax_mexicanus
ENSXCOG00000003608	cpsf1	100	76.035	ENSBTAG00000008355	CPSF1	100	77.227	Bos_taurus
ENSXCOG00000003608	cpsf1	100	32.337	WBGene00022301	cpsf-1	99	40.113	Caenorhabditis_elegans
ENSXCOG00000003608	cpsf1	100	77.663	ENSCJAG00000021421	CPSF1	100	77.524	Callithrix_jacchus
ENSXCOG00000003608	cpsf1	96	78.716	ENSCAFG00000001600	CPSF1	100	77.948	Canis_familiaris
ENSXCOG00000003608	cpsf1	100	77.555	ENSCAFG00020020821	CPSF1	100	77.555	Canis_lupus_dingo
ENSXCOG00000003608	cpsf1	100	74.411	ENSCHIG00000015833	CPSF1	100	74.133	Capra_hircus
ENSXCOG00000003608	cpsf1	100	78.077	ENSTSYG00000028560	CPSF1	100	77.870	Carlito_syrichta
ENSXCOG00000003608	cpsf1	96	78.114	ENSCAPG00000014921	CPSF1	99	77.754	Cavia_aperea
ENSXCOG00000003608	cpsf1	100	76.763	ENSCPOG00000011448	CPSF1	100	76.487	Cavia_porcellus
ENSXCOG00000003608	cpsf1	100	77.939	ENSCCAG00000037658	CPSF1	100	77.663	Cebus_capucinus
ENSXCOG00000003608	cpsf1	100	77.248	ENSCATG00000037234	CPSF1	100	77.455	Cercocebus_atys
ENSXCOG00000003608	cpsf1	100	77.993	ENSCLAG00000012166	CPSF1	100	77.716	Chinchilla_lanigera
ENSXCOG00000003608	cpsf1	100	77.593	ENSCSAG00000008502	CPSF1	100	77.455	Chlorocebus_sabaeus
ENSXCOG00000003608	cpsf1	99	79.749	ENSCPBG00000018910	CPSF1	96	79.888	Chrysemys_picta_bellii
ENSXCOG00000003608	cpsf1	96	48.592	ENSCING00000000514	-	100	48.592	Ciona_intestinalis
ENSXCOG00000003608	cpsf1	99	48.929	ENSCSAVG00000002293	-	99	50.233	Ciona_savignyi
ENSXCOG00000003608	cpsf1	96	75.793	ENSCANG00000032760	CPSF1	100	76.389	Colobus_angolensis_palliatus
ENSXCOG00000003608	cpsf1	100	77.509	ENSCGRG00001016344	Cpsf1	100	77.370	Cricetulus_griseus_chok1gshd
ENSXCOG00000003608	cpsf1	100	75.640	ENSCGRG00000003118	Cpsf1	100	75.363	Cricetulus_griseus_crigri
ENSXCOG00000003608	cpsf1	100	86.411	ENSCSEG00000013464	cpsf1	100	86.341	Cynoglossus_semilaevis
ENSXCOG00000003608	cpsf1	85	92.990	ENSCVAG00000014059	cpsf1	100	86.111	Cyprinodon_variegatus
ENSXCOG00000003608	cpsf1	100	84.897	ENSDARG00000034178	cpsf1	100	84.690	Danio_rerio
ENSXCOG00000003608	cpsf1	56	80.636	ENSDNOG00000043654	CPSF1	94	80.347	Dasypus_novemcinctus
ENSXCOG00000003608	cpsf1	96	78.345	ENSDORG00000006278	Cpsf1	99	78.417	Dipodomys_ordii
ENSXCOG00000003608	cpsf1	100	44.482	FBgn0024698	Cpsf160	100	44.407	Drosophila_melanogaster
ENSXCOG00000003608	cpsf1	80	81.208	ENSETEG00000006022	CPSF1	83	81.208	Echinops_telfairi
ENSXCOG00000003608	cpsf1	100	77.555	ENSEASG00005010774	CPSF1	100	77.555	Equus_asinus_asinus
ENSXCOG00000003608	cpsf1	100	77.486	ENSECAG00000022209	CPSF1	100	77.486	Equus_caballus
ENSXCOG00000003608	cpsf1	100	77.778	ENSEEUG00000000471	CPSF1	100	77.502	Erinaceus_europaeus
ENSXCOG00000003608	cpsf1	100	84.011	ENSELUG00000012271	cpsf1	100	84.080	Esox_lucius
ENSXCOG00000003608	cpsf1	100	78.186	ENSFDAG00000016060	CPSF1	100	77.909	Fukomys_damarensis
ENSXCOG00000003608	cpsf1	100	92.867	ENSFHEG00000016801	cpsf1	100	92.659	Fundulus_heteroclitus
ENSXCOG00000003608	cpsf1	100	85.114	ENSGMOG00000000796	cpsf1	100	85.093	Gadus_morhua
ENSXCOG00000003608	cpsf1	94	96.899	ENSGAFG00000018890	cpsf1	99	96.899	Gambusia_affinis
ENSXCOG00000003608	cpsf1	100	88.284	ENSGACG00000008703	cpsf1	100	88.353	Gasterosteus_aculeatus
ENSXCOG00000003608	cpsf1	100	77.188	ENSGAGG00000004276	CPSF1	98	81.506	Gopherus_agassizii
ENSXCOG00000003608	cpsf1	100	77.439	ENSGGOG00000016185	CPSF1	100	77.578	Gorilla_gorilla
ENSXCOG00000003608	cpsf1	100	89.595	ENSHBUG00000018900	cpsf1	100	89.525	Haplochromis_burtoni
ENSXCOG00000003608	cpsf1	100	77.993	ENSHGLG00000016139	CPSF1	100	77.716	Heterocephalus_glaber_female
ENSXCOG00000003608	cpsf1	100	77.924	ENSHGLG00100009750	CPSF1	100	77.647	Heterocephalus_glaber_male
ENSXCOG00000003608	cpsf1	100	86.134	ENSHCOG00000018509	cpsf1	100	86.475	Hippocampus_comes
ENSXCOG00000003608	cpsf1	100	80.769	ENSIPUG00000011259	cpsf1	100	80.701	Ictalurus_punctatus
ENSXCOG00000003608	cpsf1	96	77.921	ENSSTOG00000009957	CPSF1	99	77.778	Ictidomys_tridecemlineatus
ENSXCOG00000003608	cpsf1	100	78.017	ENSJJAG00000023002	Cpsf1	100	77.809	Jaculus_jaculus
ENSXCOG00000003608	cpsf1	91	94.671	ENSKMAG00000001940	cpsf1	99	94.671	Kryptolebias_marmoratus
ENSXCOG00000003608	cpsf1	100	86.875	ENSLBEG00000003601	cpsf1	100	86.875	Labrus_bergylta
ENSXCOG00000003608	cpsf1	89	77.924	ENSLACG00000000233	CPSF1	100	66.322	Latimeria_chalumnae
ENSXCOG00000003608	cpsf1	100	81.297	ENSLOCG00000008484	cpsf1	100	81.435	Lepisosteus_oculatus
ENSXCOG00000003608	cpsf1	96	78.427	ENSLAFG00000022601	CPSF1	99	78.283	Loxodonta_africana
ENSXCOG00000003608	cpsf1	100	77.317	ENSMFAG00000037013	CPSF1	100	77.524	Macaca_fascicularis
ENSXCOG00000003608	cpsf1	100	77.577	ENSMMUG00000007380	CPSF1	100	77.786	Macaca_mulatta
ENSXCOG00000003608	cpsf1	96	78.217	ENSMNEG00000043564	CPSF1	99	78.433	Macaca_nemestrina
ENSXCOG00000003608	cpsf1	100	77.248	ENSMLEG00000043010	CPSF1	100	77.455	Mandrillus_leucophaeus
ENSXCOG00000003608	cpsf1	100	87.636	ENSMAMG00000003803	cpsf1	100	87.772	Mastacembelus_armatus
ENSXCOG00000003608	cpsf1	100	86.914	ENSMZEG00005001168	cpsf1	100	86.844	Maylandia_zebra
ENSXCOG00000003608	cpsf1	100	77.578	ENSMAUG00000003601	Cpsf1	100	77.439	Mesocricetus_auratus
ENSXCOG00000003608	cpsf1	100	77.647	ENSMICG00000015767	CPSF1	100	77.370	Microcebus_murinus
ENSXCOG00000003608	cpsf1	100	77.785	ENSMOCG00000022758	Cpsf1	100	77.578	Microtus_ochrogaster
ENSXCOG00000003608	cpsf1	100	89.840	ENSMMOG00000021245	cpsf1	100	89.422	Mola_mola
ENSXCOG00000003608	cpsf1	100	77.701	ENSMODG00000010755	CPSF1	100	77.770	Monodelphis_domestica
ENSXCOG00000003608	cpsf1	100	87.619	ENSMALG00000020545	cpsf1	100	87.483	Monopterus_albus
ENSXCOG00000003608	cpsf1	100	77.785	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.578	Mus_caroli
ENSXCOG00000003608	cpsf1	100	77.716	ENSMUSG00000034022	Cpsf1	100	77.509	Mus_musculus
ENSXCOG00000003608	cpsf1	100	77.855	MGP_PahariEiJ_G0019946	Cpsf1	100	77.647	Mus_pahari
ENSXCOG00000003608	cpsf1	100	77.785	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.578	Mus_spretus
ENSXCOG00000003608	cpsf1	94	78.550	ENSMPUG00000006419	CPSF1	93	78.550	Mustela_putorius_furo
ENSXCOG00000003608	cpsf1	100	77.609	ENSNGAG00000022460	Cpsf1	100	77.332	Nannospalax_galili
ENSXCOG00000003608	cpsf1	100	83.880	ENSNBRG00000000813	cpsf1	100	84.104	Neolamprologus_brichardi
ENSXCOG00000003608	cpsf1	86	66.667	ENSNLEG00000010633	-	100	75.926	Nomascus_leucogenys
ENSXCOG00000003608	cpsf1	81	81.977	ENSMEUG00000014922	CPSF1	84	81.977	Notamacropus_eugenii
ENSXCOG00000003608	cpsf1	60	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSXCOG00000003608	cpsf1	100	78.062	ENSODEG00000013995	CPSF1	100	77.785	Octodon_degus
ENSXCOG00000003608	cpsf1	100	89.120	ENSONIG00000007676	cpsf1	100	88.981	Oreochromis_niloticus
ENSXCOG00000003608	cpsf1	58	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSXCOG00000003608	cpsf1	100	89.542	ENSORLG00000013544	cpsf1	100	89.405	Oryzias_latipes
ENSXCOG00000003608	cpsf1	100	89.474	ENSORLG00020021693	cpsf1	100	89.337	Oryzias_latipes_hni
ENSXCOG00000003608	cpsf1	100	89.405	ENSORLG00015009979	cpsf1	100	89.269	Oryzias_latipes_hsok
ENSXCOG00000003608	cpsf1	100	88.638	ENSOMEG00000011849	cpsf1	100	88.706	Oryzias_melastigma
ENSXCOG00000003608	cpsf1	100	78.147	ENSOGAG00000000315	CPSF1	100	78.008	Otolemur_garnettii
ENSXCOG00000003608	cpsf1	100	77.455	ENSPPAG00000019280	CPSF1	100	77.593	Pan_paniscus
ENSXCOG00000003608	cpsf1	100	77.455	ENSPTRG00000049288	-	100	77.593	Pan_troglodytes
ENSXCOG00000003608	cpsf1	100	76.139	ENSPTRG00000051253	-	100	77.376	Pan_troglodytes
ENSXCOG00000003608	cpsf1	96	78.217	ENSPANG00000015005	CPSF1	99	78.433	Papio_anubis
ENSXCOG00000003608	cpsf1	100	85.260	ENSPKIG00000002582	cpsf1	100	85.541	Paramormyrops_kingsleyae
ENSXCOG00000003608	cpsf1	100	77.908	ENSPCIG00000009035	CPSF1	100	77.977	Phascolarctos_cinereus
ENSXCOG00000003608	cpsf1	100	95.102	ENSPFOG00000012870	cpsf1	100	95.102	Poecilia_formosa
ENSXCOG00000003608	cpsf1	100	95.363	ENSPREG00000016307	cpsf1	100	95.363	Poecilia_reticulata
ENSXCOG00000003608	cpsf1	100	70.698	ENSPPYG00000018973	CPSF1	100	70.422	Pongo_abelii
ENSXCOG00000003608	cpsf1	90	82.955	ENSPCAG00000011541	CPSF1	93	82.955	Procavia_capensis
ENSXCOG00000003608	cpsf1	100	74.584	ENSPCOG00000020001	CPSF1	100	75.926	Propithecus_coquereli
ENSXCOG00000003608	cpsf1	90	85.143	ENSPVAG00000006761	CPSF1	91	85.143	Pteropus_vampyrus
ENSXCOG00000003608	cpsf1	100	88.353	ENSPNYG00000004906	cpsf1	100	88.284	Pundamilia_nyererei
ENSXCOG00000003608	cpsf1	100	80.976	ENSPNAG00000024395	cpsf1	100	80.697	Pygocentrus_nattereri
ENSXCOG00000003608	cpsf1	100	77.685	ENSRNOG00000030705	Cpsf1	100	77.477	Rattus_norvegicus
ENSXCOG00000003608	cpsf1	100	77.248	ENSRBIG00000044907	CPSF1	100	77.455	Rhinopithecus_bieti
ENSXCOG00000003608	cpsf1	100	77.317	ENSRROG00000044861	CPSF1	100	77.524	Rhinopithecus_roxellana
ENSXCOG00000003608	cpsf1	96	78.674	ENSSBOG00000027177	CPSF1	99	78.530	Saimiri_boliviensis_boliviensis
ENSXCOG00000003608	cpsf1	100	77.701	ENSSHAG00000006500	CPSF1	100	77.701	Sarcophilus_harrisii
ENSXCOG00000003608	cpsf1	100	83.023	ENSSFOG00015004606	cpsf1	100	85.652	Scleropages_formosus
ENSXCOG00000003608	cpsf1	100	87.823	ENSSMAG00000020547	cpsf1	100	88.027	Scophthalmus_maximus
ENSXCOG00000003608	cpsf1	100	90.763	ENSSDUG00000001100	cpsf1	100	90.343	Seriola_dumerili
ENSXCOG00000003608	cpsf1	100	90.483	ENSSLDG00000003619	cpsf1	100	90.483	Seriola_lalandi_dorsalis
ENSXCOG00000003608	cpsf1	89	75.101	ENSSARG00000003643	CPSF1	92	74.698	Sorex_araneus
ENSXCOG00000003608	cpsf1	96	80.590	ENSSPUG00000014396	CPSF1	100	80.446	Sphenodon_punctatus
ENSXCOG00000003608	cpsf1	100	88.103	ENSSPAG00000005349	cpsf1	100	88.375	Stegastes_partitus
ENSXCOG00000003608	cpsf1	100	77.248	ENSSSCG00000005906	CPSF1	100	76.971	Sus_scrofa
ENSXCOG00000003608	cpsf1	96	86.911	ENSTRUG00000013134	cpsf1	99	86.137	Takifugu_rubripes
ENSXCOG00000003608	cpsf1	100	87.354	ENSTNIG00000014027	cpsf1	100	86.873	Tetraodon_nigroviridis
ENSXCOG00000003608	cpsf1	77	73.090	ENSTBEG00000001756	CPSF1	91	72.569	Tupaia_belangeri
ENSXCOG00000003608	cpsf1	89	82.292	ENSTTRG00000001937	CPSF1	89	82.118	Tursiops_truncatus
ENSXCOG00000003608	cpsf1	96	79.004	ENSUAMG00000006476	CPSF1	97	78.788	Ursus_americanus
ENSXCOG00000003608	cpsf1	100	98.116	ENSXMAG00000005798	cpsf1	100	98.116	Xiphophorus_maculatus