EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000003704 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 9406 bases
Position: chrKQ557206.1:1010823-1020228
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004699	KH_1	PF00013.29	1.9e-06	1	1
ENSXCOP00000004699	zf-CCHC	PF00098.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004756	-	1554	-	ENSXCOP00000004699	517 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003704	sf1	73	91.451	ENSAPOG00000012341	sf1	54	93.699	Acanthochromis_polyacanthus
ENSXCOG00000003704	sf1	75	80.941	ENSAMEG00000017828	SF1	57	84.932	Ailuropoda_melanoleuca
ENSXCOG00000003704	sf1	68	93.258	ENSACIG00000016514	sf1	55	93.277	Amphilophus_citrinellus
ENSXCOG00000003704	sf1	73	91.710	ENSAOCG00000010934	sf1	54	93.973	Amphiprion_ocellaris
ENSXCOG00000003704	sf1	73	91.710	ENSAPEG00000009498	sf1	54	93.973	Amphiprion_percula
ENSXCOG00000003704	sf1	68	93.113	ENSATEG00000001894	sf1	71	89.293	Anabas_testudineus
ENSXCOG00000003704	sf1	75	80.941	ENSANAG00000026664	-	87	84.932	Aotus_nancymaae
ENSXCOG00000003704	sf1	93	66.998	ENSANAG00000022607	-	88	75.758	Aotus_nancymaae
ENSXCOG00000003704	sf1	69	94.413	ENSACLG00000007633	sf1	74	84.134	Astatotilapia_calliptera
ENSXCOG00000003704	sf1	75	80.941	ENSBTAG00000001035	SF1	61	85.205	Bos_taurus
ENSXCOG00000003704	sf1	75	80.941	ENSCJAG00000002780	SF1	57	85.205	Callithrix_jacchus
ENSXCOG00000003704	sf1	75	80.941	ENSCAFG00000014239	SF1	57	85.205	Canis_familiaris
ENSXCOG00000003704	sf1	75	80.941	ENSCAFG00020014381	SF1	57	85.205	Canis_lupus_dingo
ENSXCOG00000003704	sf1	75	80.941	ENSCHIG00000025867	SF1	67	85.205	Capra_hircus
ENSXCOG00000003704	sf1	76	72.250	ENSTSYG00000033618	SF1	80	94.161	Carlito_syrichta
ENSXCOG00000003704	sf1	75	80.941	ENSCAPG00000010762	SF1	65	85.205	Cavia_aperea
ENSXCOG00000003704	sf1	75	80.941	ENSCPOG00000012290	SF1	68	84.932	Cavia_porcellus
ENSXCOG00000003704	sf1	75	82.368	ENSCCAG00000037881	SF1	87	84.932	Cebus_capucinus
ENSXCOG00000003704	sf1	75	73.367	ENSCCAG00000023781	-	81	75.068	Cebus_capucinus
ENSXCOG00000003704	sf1	75	80.941	ENSCATG00000011564	SF1	87	84.932	Cercocebus_atys
ENSXCOG00000003704	sf1	75	80.941	ENSCSAG00000007258	SF1	67	85.205	Chlorocebus_sabaeus
ENSXCOG00000003704	sf1	72	75.385	ENSCHOG00000006008	SF1	66	79.202	Choloepus_hoffmanni
ENSXCOG00000003704	sf1	60	67.302	ENSCING00000005564	-	72	62.604	Ciona_intestinalis
ENSXCOG00000003704	sf1	77	60.147	ENSCSAVG00000009055	-	72	62.500	Ciona_savignyi
ENSXCOG00000003704	sf1	75	80.941	ENSCANG00000042201	SF1	88	84.932	Colobus_angolensis_palliatus
ENSXCOG00000003704	sf1	75	81.188	ENSCGRG00001003677	Sf1	64	85.753	Cricetulus_griseus_chok1gshd
ENSXCOG00000003704	sf1	75	81.188	ENSCGRG00000001708	Sf1	67	85.753	Cricetulus_griseus_crigri
ENSXCOG00000003704	sf1	74	90.281	ENSCSEG00000014375	sf1	52	93.151	Cynoglossus_semilaevis
ENSXCOG00000003704	sf1	72	97.568	ENSCVAG00000001670	sf1	77	93.996	Cyprinodon_variegatus
ENSXCOG00000003704	sf1	72	88.564	ENSDARG00000008188	sf1	79	81.504	Danio_rerio
ENSXCOG00000003704	sf1	75	80.788	ENSDNOG00000001282	SF1	67	85.205	Dasypus_novemcinctus
ENSXCOG00000003704	sf1	75	80.941	ENSDORG00000016334	Sf1	57	85.205	Dipodomys_ordii
ENSXCOG00000003704	sf1	75	73.827	ENSETEG00000012830	SF1	51	76.776	Echinops_telfairi
ENSXCOG00000003704	sf1	90	53.861	ENSEBUG00000012728	sf1	51	63.061	Eptatretus_burgeri
ENSXCOG00000003704	sf1	75	80.941	ENSEASG00005018272	SF1	67	85.205	Equus_asinus_asinus
ENSXCOG00000003704	sf1	75	81.188	ENSECAG00000024544	SF1	67	85.479	Equus_caballus
ENSXCOG00000003704	sf1	67	80.822	ENSEEUG00000001058	SF1	83	85.583	Erinaceus_europaeus
ENSXCOG00000003704	sf1	75	80.941	ENSFCAG00000012231	SF1	57	85.205	Felis_catus
ENSXCOG00000003704	sf1	75	80.941	ENSFDAG00000009833	SF1	65	85.205	Fukomys_damarensis
ENSXCOG00000003704	sf1	70	91.711	ENSFHEG00000022656	sf1	71	85.484	Fundulus_heteroclitus
ENSXCOG00000003704	sf1	80	80.760	ENSGMOG00000007469	sf1	58	92.453	Gadus_morhua
ENSXCOG00000003704	sf1	98	93.295	ENSGAFG00000019284	sf1	99	93.295	Gambusia_affinis
ENSXCOG00000003704	sf1	78	83.659	ENSGAGG00000021691	SF1	51	86.389	Gopherus_agassizii
ENSXCOG00000003704	sf1	69	92.857	ENSHBUG00000011598	sf1	71	86.948	Haplochromis_burtoni
ENSXCOG00000003704	sf1	75	80.941	ENSHGLG00000009541	SF1	64	85.205	Heterocephalus_glaber_female
ENSXCOG00000003704	sf1	75	80.941	ENSHGLG00100013879	-	65	85.205	Heterocephalus_glaber_male
ENSXCOG00000003704	sf1	58	86.424	ENSHGLG00100008076	-	66	82.965	Heterocephalus_glaber_male
ENSXCOG00000003704	sf1	72	87.728	ENSHCOG00000011388	sf1	54	90.411	Hippocampus_comes
ENSXCOG00000003704	sf1	75	80.941	ENSSTOG00000009790	-	58	85.205	Ictidomys_tridecemlineatus
ENSXCOG00000003704	sf1	79	71.905	ENSSTOG00000024353	-	66	75.068	Ictidomys_tridecemlineatus
ENSXCOG00000003704	sf1	75	81.188	ENSJJAG00000011788	Sf1	57	85.479	Jaculus_jaculus
ENSXCOG00000003704	sf1	69	94.262	ENSKMAG00000005854	sf1	56	94.231	Kryptolebias_marmoratus
ENSXCOG00000003704	sf1	69	93.514	ENSLBEG00000019836	sf1	53	93.162	Labrus_bergylta
ENSXCOG00000003704	sf1	75	78.856	ENSLACG00000018493	SF1	66	80.274	Latimeria_chalumnae
ENSXCOG00000003704	sf1	69	88.950	ENSLOCG00000002130	sf1	56	88.950	Lepisosteus_oculatus
ENSXCOG00000003704	sf1	75	80.941	ENSLAFG00000007201	SF1	62	83.602	Loxodonta_africana
ENSXCOG00000003704	sf1	75	80.941	ENSMFAG00000033122	SF1	87	84.932	Macaca_fascicularis
ENSXCOG00000003704	sf1	75	80.941	ENSMMUG00000022606	SF1	89	85.205	Macaca_mulatta
ENSXCOG00000003704	sf1	75	80.941	ENSMNEG00000037901	SF1	87	84.932	Macaca_nemestrina
ENSXCOG00000003704	sf1	75	80.941	ENSMLEG00000040706	SF1	88	85.205	Mandrillus_leucophaeus
ENSXCOG00000003704	sf1	69	94.231	ENSMAMG00000001780	sf1	71	89.516	Mastacembelus_armatus
ENSXCOG00000003704	sf1	69	92.857	ENSMZEG00005009196	sf1	71	86.948	Maylandia_zebra
ENSXCOG00000003704	sf1	75	81.188	ENSMAUG00000014064	Sf1	64	85.753	Mesocricetus_auratus
ENSXCOG00000003704	sf1	75	80.941	ENSMICG00000001202	SF1	87	84.699	Microcebus_murinus
ENSXCOG00000003704	sf1	75	80.941	ENSMOCG00000022038	Sf1	64	85.753	Microtus_ochrogaster
ENSXCOG00000003704	sf1	79	92.010	ENSMMOG00000020474	sf1	72	88.957	Mola_mola
ENSXCOG00000003704	sf1	75	80.590	ENSMODG00000029407	SF1	79	85.479	Monodelphis_domestica
ENSXCOG00000003704	sf1	69	93.521	ENSMALG00000020521	sf1	61	93.539	Monopterus_albus
ENSXCOG00000003704	sf1	75	81.188	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSXCOG00000003704	sf1	75	81.188	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSXCOG00000003704	sf1	75	81.188	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSXCOG00000003704	sf1	75	81.188	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSXCOG00000003704	sf1	75	81.188	ENSMPUG00000012684	SF1	57	85.205	Mustela_putorius_furo
ENSXCOG00000003704	sf1	75	80.941	ENSMLUG00000015217	-	57	85.205	Myotis_lucifugus
ENSXCOG00000003704	sf1	79	77.283	ENSMLUG00000029800	-	63	81.644	Myotis_lucifugus
ENSXCOG00000003704	sf1	75	81.188	ENSNGAG00000005550	Sf1	64	85.479	Nannospalax_galili
ENSXCOG00000003704	sf1	69	94.413	ENSNBRG00000017606	sf1	55	93.017	Neolamprologus_brichardi
ENSXCOG00000003704	sf1	75	80.941	ENSNLEG00000005236	-	88	84.932	Nomascus_leucogenys
ENSXCOG00000003704	sf1	74	80.846	ENSMEUG00000013424	SF1	69	85.399	Notamacropus_eugenii
ENSXCOG00000003704	sf1	67	81.096	ENSOPRG00000005008	SF1	66	85.583	Ochotona_princeps
ENSXCOG00000003704	sf1	75	78.465	ENSODEG00000006102	-	58	82.466	Octodon_degus
ENSXCOG00000003704	sf1	69	92.582	ENSONIG00000015728	sf1	71	86.400	Oreochromis_niloticus
ENSXCOG00000003704	sf1	63	76.676	ENSOANG00000002909	SF1	76	78.689	Ornithorhynchus_anatinus
ENSXCOG00000003704	sf1	75	80.941	ENSOCUG00000026486	SF1	58	84.932	Oryctolagus_cuniculus
ENSXCOG00000003704	sf1	73	89.844	ENSORLG00000011853	sf1	53	93.132	Oryzias_latipes
ENSXCOG00000003704	sf1	73	89.583	ENSORLG00020011834	sf1	53	92.857	Oryzias_latipes_hni
ENSXCOG00000003704	sf1	70	90.323	ENSORLG00015012855	sf1	53	92.308	Oryzias_latipes_hsok
ENSXCOG00000003704	sf1	70	91.935	ENSOMEG00000005210	sf1	73	87.674	Oryzias_melastigma
ENSXCOG00000003704	sf1	75	80.941	ENSOGAG00000016196	SF1	57	85.205	Otolemur_garnettii
ENSXCOG00000003704	sf1	75	80.941	ENSOARG00000009166	SF1	64	85.205	Ovis_aries
ENSXCOG00000003704	sf1	75	81.095	ENSPPAG00000002799	-	89	84.932	Pan_paniscus
ENSXCOG00000003704	sf1	75	80.941	ENSPPRG00000013566	SF1	58	85.836	Panthera_pardus
ENSXCOG00000003704	sf1	75	80.941	ENSPTIG00000016141	SF1	66	85.205	Panthera_tigris_altaica
ENSXCOG00000003704	sf1	76	81.068	ENSPTRG00000003846	SF1	88	84.932	Pan_troglodytes
ENSXCOG00000003704	sf1	75	80.941	ENSPANG00000020754	SF1	87	84.932	Papio_anubis
ENSXCOG00000003704	sf1	62	80.665	ENSPKIG00000012116	sf1	79	81.672	Paramormyrops_kingsleyae
ENSXCOG00000003704	sf1	59	82.637	ENSPSIG00000003610	SF1	52	86.207	Pelodiscus_sinensis
ENSXCOG00000003704	sf1	75	81.188	ENSPEMG00000010463	Sf1	64	85.753	Peromyscus_maniculatus_bairdii
ENSXCOG00000003704	sf1	75	80.788	ENSPCIG00000018173	SF1	59	85.479	Phascolarctos_cinereus
ENSXCOG00000003704	sf1	94	94.177	ENSPFOG00000013683	sf1	84	94.177	Poecilia_formosa
ENSXCOG00000003704	sf1	94	92.153	ENSPLAG00000018076	sf1	73	92.153	Poecilia_latipinna
ENSXCOG00000003704	sf1	94	92.555	ENSPMEG00000005726	sf1	75	92.555	Poecilia_mexicana
ENSXCOG00000003704	sf1	94	92.153	ENSPREG00000004155	sf1	71	92.153	Poecilia_reticulata
ENSXCOG00000003704	sf1	75	80.941	ENSPPYG00000003098	-	69	85.205	Pongo_abelii
ENSXCOG00000003704	sf1	75	80.941	ENSPCAG00000013631	SF1	54	84.932	Procavia_capensis
ENSXCOG00000003704	sf1	75	80.941	ENSPCOG00000027546	SF1	87	84.699	Propithecus_coquereli
ENSXCOG00000003704	sf1	75	80.788	ENSPVAG00000016938	SF1	55	85.205	Pteropus_vampyrus
ENSXCOG00000003704	sf1	69	92.857	ENSPNYG00000004673	sf1	71	86.948	Pundamilia_nyererei
ENSXCOG00000003704	sf1	69	89.835	ENSPNAG00000013072	sf1	54	90.055	Pygocentrus_nattereri
ENSXCOG00000003704	sf1	75	81.188	ENSRNOG00000021085	Sf1	60	85.430	Rattus_norvegicus
ENSXCOG00000003704	sf1	75	80.941	ENSRBIG00000042818	SF1	88	84.932	Rhinopithecus_bieti
ENSXCOG00000003704	sf1	75	80.941	ENSRROG00000045655	SF1	88	85.205	Rhinopithecus_roxellana
ENSXCOG00000003704	sf1	79	38.084	YLR116W	MSL5	63	41.325	Saccharomyces_cerevisiae
ENSXCOG00000003704	sf1	75	70.936	ENSSBOG00000022267	-	84	75.073	Saimiri_boliviensis_boliviensis
ENSXCOG00000003704	sf1	73	80.720	ENSSHAG00000006841	SF1	67	85.753	Sarcophilus_harrisii
ENSXCOG00000003704	sf1	73	85.455	ENSSFOG00015021978	sf1	52	87.535	Scleropages_formosus
ENSXCOG00000003704	sf1	93	85.657	ENSSMAG00000007549	sf1	56	92.603	Scophthalmus_maximus
ENSXCOG00000003704	sf1	68	93.664	ENSSDUG00000003903	sf1	55	94.780	Seriola_dumerili
ENSXCOG00000003704	sf1	69	93.132	ENSSLDG00000013075	sf1	54	94.247	Seriola_lalandi_dorsalis
ENSXCOG00000003704	sf1	75	76.733	ENSSARG00000008180	SF1	71	80.548	Sorex_araneus
ENSXCOG00000003704	sf1	76	80.095	ENSSPUG00000012907	SF1	58	87.931	Sphenodon_punctatus
ENSXCOG00000003704	sf1	73	92.228	ENSSPAG00000019060	sf1	54	93.973	Stegastes_partitus
ENSXCOG00000003704	sf1	75	80.941	ENSSSCG00000013021	SF1	67	85.205	Sus_scrofa
ENSXCOG00000003704	sf1	94	71.930	ENSTNIG00000004820	sf1	71	78.075	Tetraodon_nigroviridis
ENSXCOG00000003704	sf1	75	74.752	ENSTBEG00000013133	SF1	53	78.082	Tupaia_belangeri
ENSXCOG00000003704	sf1	75	76.238	ENSTTRG00000008857	SF1	67	80.274	Tursiops_truncatus
ENSXCOG00000003704	sf1	56	80.678	ENSUAMG00000011977	SF1	50	83.206	Ursus_americanus
ENSXCOG00000003704	sf1	75	81.864	ENSUMAG00000007268	SF1	70	85.205	Ursus_maritimus
ENSXCOG00000003704	sf1	75	80.941	ENSVVUG00000028585	SF1	67	85.205	Vulpes_vulpes
ENSXCOG00000003704	sf1	95	72.366	ENSXETG00000008434	sf1	62	85.915	Xenopus_tropicalis
ENSXCOG00000003704	sf1	95	92.857	ENSXMAG00000007822	sf1	75	92.857	Xiphophorus_maculatus