EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003710 (Gene tree)
Gene ID: -
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: cysteine three histidine 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3426 bases
Position: chrKQ557206.1:1029417-1032842
Accession: ZDB-GENE-990806-20
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004709	zf-CCCH	PF00642.24	5e-29	1	3
ENSXCOP00000004709	zf-CCCH	PF00642.24	5e-29	2	3
ENSXCOP00000004709	zf-CCCH	PF00642.24	5e-29	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004766	-	702	-	ENSXCOP00000004709	233 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003710's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003710's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003710	cth1	83	58.108	ENSXCOG00000006597	zfp36l2	50	33.971

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003710	cth1	82	57.265	ENSAPOG00000012552	cth1	86	59.514	Acanthochromis_polyacanthus
ENSXCOG00000003710	cth1	82	51.852	ENSACIG00000016026	cth1	81	55.426	Amphilophus_citrinellus
ENSXCOG00000003710	cth1	82	55.649	ENSAOCG00000001644	cth1	82	57.874	Amphiprion_ocellaris
ENSXCOG00000003710	cth1	82	55.649	ENSAPEG00000008930	cth1	82	57.874	Amphiprion_percula
ENSXCOG00000003710	cth1	82	57.480	ENSATEG00000002281	cth1	81	58.736	Anabas_testudineus
ENSXCOG00000003710	cth1	82	57.642	ENSACLG00000015353	cth1	87	59.917	Astatotilapia_calliptera
ENSXCOG00000003710	cth1	90	52.381	ENSAMXG00000025717	cth1	87	53.506	Astyanax_mexicanus
ENSXCOG00000003710	cth1	82	52.756	ENSCSEG00000014617	cth1	83	56.226	Cynoglossus_semilaevis
ENSXCOG00000003710	cth1	82	61.111	ENSCVAG00000001680	cth1	53	62.249	Cyprinodon_variegatus
ENSXCOG00000003710	cth1	82	51.200	ENSDARG00000057328	cth1	84	52.434	Danio_rerio
ENSXCOG00000003710	cth1	89	50.360	ENSELUG00000012738	cth1	82	50.725	Esox_lucius
ENSXCOG00000003710	cth1	82	62.397	ENSFHEG00000022665	cth1	83	62.403	Fundulus_heteroclitus
ENSXCOG00000003710	cth1	82	60.538	ENSGMOG00000007360	cth1	88	57.977	Gadus_morhua
ENSXCOG00000003710	cth1	88	72.137	ENSGAFG00000019288	cth1	83	72.414	Gambusia_affinis
ENSXCOG00000003710	cth1	88	61.181	ENSGACG00000000802	cth1	81	61.181	Gasterosteus_aculeatus
ENSXCOG00000003710	cth1	82	56.769	ENSHBUG00000014400	cth1	82	58.848	Haplochromis_burtoni
ENSXCOG00000003710	cth1	82	52.133	ENSHCOG00000010276	cth1	81	53.304	Hippocampus_comes
ENSXCOG00000003710	cth1	90	53.532	ENSIPUG00000018040	cth1	84	53.731	Ictalurus_punctatus
ENSXCOG00000003710	cth1	82	54.701	ENSKMAG00000005944	cth1	81	57.787	Kryptolebias_marmoratus
ENSXCOG00000003710	cth1	82	55.285	ENSLBEG00000019253	cth1	86	56.250	Labrus_bergylta
ENSXCOG00000003710	cth1	65	59.236	ENSLOCG00000002047	cth1	80	59.236	Lepisosteus_oculatus
ENSXCOG00000003710	cth1	81	51.770	ENSMAMG00000001525	cth1	61	51.770	Mastacembelus_armatus
ENSXCOG00000003710	cth1	82	57.642	ENSMZEG00005022335	cth1	82	59.671	Maylandia_zebra
ENSXCOG00000003710	cth1	82	53.200	ENSMMOG00000020518	cth1	88	55.849	Mola_mola
ENSXCOG00000003710	cth1	82	43.894	ENSMALG00000020738	cth1	50	58.730	Monopterus_albus
ENSXCOG00000003710	cth1	82	62.439	ENSNBRG00000022789	cth1	81	63.801	Neolamprologus_brichardi
ENSXCOG00000003710	cth1	82	56.410	ENSONIG00000021318	cth1	83	57.600	Oreochromis_niloticus
ENSXCOG00000003710	cth1	88	52.869	ENSORLG00000022847	cth1	82	55.102	Oryzias_latipes
ENSXCOG00000003710	cth1	88	53.279	ENSORLG00020011979	cth1	82	55.510	Oryzias_latipes_hni
ENSXCOG00000003710	cth1	81	54.185	ENSORLG00015013084	cth1	82	54.508	Oryzias_latipes_hsok
ENSXCOG00000003710	cth1	81	55.652	ENSOMEG00000005809	cth1	72	57.613	Oryzias_melastigma
ENSXCOG00000003710	cth1	98	47.719	ENSPKIG00000015883	cth1	87	48.239	Paramormyrops_kingsleyae
ENSXCOG00000003710	cth1	82	52.941	ENSPMGG00000004275	cth1	84	54.815	Periophthalmus_magnuspinnatus
ENSXCOG00000003710	cth1	88	75.904	ENSPFOG00000013583	cth1	77	76.210	Poecilia_formosa
ENSXCOG00000003710	cth1	88	76.305	ENSPLAG00000018158	cth1	77	76.613	Poecilia_latipinna
ENSXCOG00000003710	cth1	88	75.904	ENSPMEG00000005744	cth1	82	76.210	Poecilia_mexicana
ENSXCOG00000003710	cth1	88	76.707	ENSPREG00000004099	cth1	82	77.016	Poecilia_reticulata
ENSXCOG00000003710	cth1	82	63.415	ENSPNYG00000016705	cth1	84	65.297	Pundamilia_nyererei
ENSXCOG00000003710	cth1	90	52.399	ENSPNAG00000013147	cth1	84	52.593	Pygocentrus_nattereri
ENSXCOG00000003710	cth1	89	53.462	ENSSFOG00015017190	cth1	84	53.462	Scleropages_formosus
ENSXCOG00000003710	cth1	77	56.067	ENSSMAG00000007977	cth1	83	57.519	Scophthalmus_maximus
ENSXCOG00000003710	cth1	82	58.039	ENSSDUG00000004321	cth1	82	59.851	Seriola_dumerili
ENSXCOG00000003710	cth1	82	57.647	ENSSLDG00000010023	-	82	59.108	Seriola_lalandi_dorsalis
ENSXCOG00000003710	cth1	82	57.647	ENSSLDG00000012760	cth1	82	59.108	Seriola_lalandi_dorsalis
ENSXCOG00000003710	cth1	82	57.647	ENSSLDG00000004516	-	82	59.108	Seriola_lalandi_dorsalis
ENSXCOG00000003710	cth1	79	56.250	ENSSPAG00000018659	cth1	83	59.004	Stegastes_partitus
ENSXCOG00000003710	cth1	82	53.226	ENSTRUG00000012770	cth1	83	55.303	Takifugu_rubripes
ENSXCOG00000003710	cth1	82	51.807	ENSTNIG00000000740	cth1	83	54.545	Tetraodon_nigroviridis
ENSXCOG00000003710	cth1	88	77.606	ENSXMAG00000023885	cth1	83	77.606	Xiphophorus_maculatus