EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000003731 (Gene tree)
Gene ID: -
Gene Symbol: rbm4.1
Alias: rbm4|wu:fc31f07|wu:fc57h11
Full Name: RNA binding motif protein 4.1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 1738 bases
Position: chrKQ557206.1:1241492-1243229
Accession: ZDB-GENE-030131-3902
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000004740	zf-CCHC	PF00098.23	4.9e-08	1	1
ENSXCOP00000004740	RRM_5	PF13893.6	2.1e-08	1	1
ENSXCOP00000004740	RRM_1	PF00076.22	7.8e-32	1	2
ENSXCOP00000004740	RRM_1	PF00076.22	7.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000004797	-	1260	-	ENSXCOP00000004740	419 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000003731's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000003731's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000003731	rbm4.1	60	53.741	ENSXCOG00000005996	rbm4.3	96	53.595
ENSXCOG00000003731	rbm4.1	65	53.333	ENSXCOG00000006001	rbm4.3	100	53.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000003731	rbm4.1	100	78.487	ENSAPOG00000012353	rbm4.1	100	79.196	Acanthochromis_polyacanthus
ENSXCOG00000003731	rbm4.1	100	77.541	ENSACIG00000016482	rbm4.1	100	78.014	Amphilophus_citrinellus
ENSXCOG00000003731	rbm4.1	100	79.196	ENSAOCG00000010915	rbm4.1	100	79.905	Amphiprion_ocellaris
ENSXCOG00000003731	rbm4.1	100	79.196	ENSAPEG00000009494	rbm4.1	100	79.905	Amphiprion_percula
ENSXCOG00000003731	rbm4.1	100	78.251	ENSATEG00000001904	rbm4.1	100	78.960	Anabas_testudineus
ENSXCOG00000003731	rbm4.1	96	48.166	ENSACLG00000007740	-	94	49.377	Astatotilapia_calliptera
ENSXCOG00000003731	rbm4.1	100	76.832	ENSACLG00000007722	rbm4.1	100	77.305	Astatotilapia_calliptera
ENSXCOG00000003731	rbm4.1	100	61.229	ENSAMXG00000036611	rbm4.1	100	61.939	Astyanax_mexicanus
ENSXCOG00000003731	rbm4.1	94	49.751	ENSCSEG00000014359	-	94	49.510	Cynoglossus_semilaevis
ENSXCOG00000003731	rbm4.1	100	69.668	ENSCSEG00000014365	rbm4.1	100	69.668	Cynoglossus_semilaevis
ENSXCOG00000003731	rbm4.1	100	85.203	ENSCVAG00000019349	rbm4.1	100	85.919	Cyprinodon_variegatus
ENSXCOG00000003731	rbm4.1	100	64.706	ENSDARG00000036386	rbm4.1	100	65.647	Danio_rerio
ENSXCOG00000003731	rbm4.1	75	71.111	ENSDARG00000055080	rbm4.2	100	49.764	Danio_rerio
ENSXCOG00000003731	rbm4.1	100	61.647	ENSELUG00000013205	rbm4.1	100	62.441	Esox_lucius
ENSXCOG00000003731	rbm4.1	100	87.351	ENSFHEG00000022926	rbm4.1	100	87.351	Fundulus_heteroclitus
ENSXCOG00000003731	rbm4.1	92	48.750	ENSGMOG00000007455	-	92	51.786	Gadus_morhua
ENSXCOG00000003731	rbm4.1	100	63.059	ENSGMOG00000007464	rbm4.1	100	65.566	Gadus_morhua
ENSXCOG00000003731	rbm4.1	100	99.284	ENSGAFG00000019302	rbm4.1	100	99.284	Gambusia_affinis
ENSXCOG00000003731	rbm4.1	99	87.500	ENSGACG00000000822	rbm4.1	100	87.500	Gasterosteus_aculeatus
ENSXCOG00000003731	rbm4.1	94	50.743	ENSGACG00000000821	-	94	50.743	Gasterosteus_aculeatus
ENSXCOG00000003731	rbm4.1	100	76.832	ENSHBUG00000011610	rbm4.1	100	77.305	Haplochromis_burtoni
ENSXCOG00000003731	rbm4.1	92	65.985	ENSHCOG00000011403	rbm4.1	95	66.837	Hippocampus_comes
ENSXCOG00000003731	rbm4.1	100	60.682	ENSIPUG00000022931	rbm4.1	100	61.905	Ictalurus_punctatus
ENSXCOG00000003731	rbm4.1	100	49.881	ENSIPUG00000022937	rbm4.2	100	50.355	Ictalurus_punctatus
ENSXCOG00000003731	rbm4.1	100	76.540	ENSKMAG00000006556	rbm4.1	100	77.251	Kryptolebias_marmoratus
ENSXCOG00000003731	rbm4.1	99	43.807	ENSKMAG00000006528	-	99	45.035	Kryptolebias_marmoratus
ENSXCOG00000003731	rbm4.1	94	50.000	ENSLBEG00000019756	-	90	62.179	Labrus_bergylta
ENSXCOG00000003731	rbm4.1	100	75.118	ENSLBEG00000019782	rbm4.1	100	75.118	Labrus_bergylta
ENSXCOG00000003731	rbm4.1	99	52.123	ENSMAMG00000001760	-	100	52.123	Mastacembelus_armatus
ENSXCOG00000003731	rbm4.1	100	78.487	ENSMAMG00000001765	rbm4.1	100	79.196	Mastacembelus_armatus
ENSXCOG00000003731	rbm4.1	100	76.832	ENSMZEG00005009205	rbm4.1	100	77.305	Maylandia_zebra
ENSXCOG00000003731	rbm4.1	100	77.412	ENSMMOG00000020479	rbm4.1	100	77.412	Mola_mola
ENSXCOG00000003731	rbm4.1	95	52.357	ENSMALG00000020557	-	94	53.000	Monopterus_albus
ENSXCOG00000003731	rbm4.1	100	77.962	ENSMALG00000020544	rbm4.1	100	78.673	Monopterus_albus
ENSXCOG00000003731	rbm4.1	100	77.069	ENSNBRG00000017755	rbm4.1	100	77.541	Neolamprologus_brichardi
ENSXCOG00000003731	rbm4.1	100	77.069	ENSONIG00000015730	rbm4.1	100	77.541	Oreochromis_niloticus
ENSXCOG00000003731	rbm4.1	100	75.238	ENSORLG00000012496	rbm4.1	100	75.238	Oryzias_latipes
ENSXCOG00000003731	rbm4.1	100	75.238	ENSORLG00020012454	rbm4.1	100	75.238	Oryzias_latipes_hni
ENSXCOG00000003731	rbm4.1	100	75.476	ENSORLG00015013678	rbm4.1	100	75.476	Oryzias_latipes_hsok
ENSXCOG00000003731	rbm4.1	100	75.714	ENSOMEG00000001001	rbm4.1	100	75.714	Oryzias_melastigma
ENSXCOG00000003731	rbm4.1	100	59.302	ENSPKIG00000020805	rbm4.1	85	80.435	Paramormyrops_kingsleyae
ENSXCOG00000003731	rbm4.1	99	46.875	ENSPFOG00000012685	-	99	48.077	Poecilia_formosa
ENSXCOG00000003731	rbm4.1	100	99.523	ENSPFOG00000012675	rbm4.1	100	99.523	Poecilia_formosa
ENSXCOG00000003731	rbm4.1	100	99.523	ENSPLAG00000018572	rbm4.1	100	99.523	Poecilia_latipinna
ENSXCOG00000003731	rbm4.1	100	99.523	ENSPMEG00000006290	rbm4.1	100	99.523	Poecilia_mexicana
ENSXCOG00000003731	rbm4.1	99	45.192	ENSPREG00000003764	-	99	44.262	Poecilia_reticulata
ENSXCOG00000003731	rbm4.1	100	99.523	ENSPREG00000003724	rbm4.1	100	99.523	Poecilia_reticulata
ENSXCOG00000003731	rbm4.1	100	76.832	ENSPNYG00000004662	rbm4.1	100	77.305	Pundamilia_nyererei
ENSXCOG00000003731	rbm4.1	100	63.466	ENSPNAG00000002539	rbm4.1	100	65.268	Pygocentrus_nattereri
ENSXCOG00000003731	rbm4.1	100	50.236	ENSPNAG00000013057	rbm4.2	100	49.645	Pygocentrus_nattereri
ENSXCOG00000003731	rbm4.1	100	61.111	ENSSFOG00015021996	sf1	100	62.791	Scleropages_formosus
ENSXCOG00000003731	rbm4.1	100	74.645	ENSSMAG00000007571	rbm4.1	100	74.408	Scophthalmus_maximus
ENSXCOG00000003731	rbm4.1	100	77.778	ENSSDUG00000003925	rbm4.1	100	79.196	Seriola_dumerili
ENSXCOG00000003731	rbm4.1	94	53.401	ENSSDUG00000003936	-	94	54.386	Seriola_dumerili
ENSXCOG00000003731	rbm4.1	94	52.010	ENSSLDG00000013157	-	94	52.393	Seriola_lalandi_dorsalis
ENSXCOG00000003731	rbm4.1	100	77.778	ENSSLDG00000013147	rbm4.1	100	79.196	Seriola_lalandi_dorsalis
ENSXCOG00000003731	rbm4.1	99	48.694	ENSSPAG00000019046	-	99	47.743	Stegastes_partitus
ENSXCOG00000003731	rbm4.1	100	78.538	ENSSPAG00000019053	rbm4.1	100	80.189	Stegastes_partitus
ENSXCOG00000003731	rbm4.1	100	71.801	ENSTRUG00000013334	rbm4.1	100	72.038	Takifugu_rubripes
ENSXCOG00000003731	rbm4.1	99	47.381	ENSTRUG00000013328	-	99	46.905	Takifugu_rubripes
ENSXCOG00000003731	rbm4.1	81	83.256	ENSTNIG00000004821	rbm4.1	100	55.370	Tetraodon_nigroviridis
ENSXCOG00000003731	rbm4.1	96	48.522	ENSTNIG00000000316	-	96	48.780	Tetraodon_nigroviridis
ENSXCOG00000003731	rbm4.1	99	47.837	ENSXMAG00000008059	-	95	73.006	Xiphophorus_maculatus
ENSXCOG00000003731	rbm4.1	100	99.761	ENSXMAG00000008069	rbm4.1	100	99.761	Xiphophorus_maculatus