EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000004022 (Gene tree)
Gene ID: -
Gene Symbol: larp1
Alias: wu:fb92d03|wu:fd15e07
Full Name: La ribonucleoprotein domain family%2C member 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 37401 bases
Position: chrKQ557203.1:464146-501546
Accession: ZDB-GENE-030131-5386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000005140	La	PF05383.17	3.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000005201	-	2673	-	ENSXCOP00000005140	890 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000004022's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004022's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000004022	larp1	75	58.631	ENSXCOG00000004435	larp1b	99	48.542

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000004022	larp1	76	74.294	ENSG00000155506	LARP1	89	82.099	Homo_sapiens
ENSXCOG00000004022	larp1	83	92.308	ENSAPOG00000020685	larp1	83	92.308	Acanthochromis_polyacanthus
ENSXCOG00000004022	larp1	76	74.930	ENSAMEG00000016673	LARP1	75	74.377	Ailuropoda_melanoleuca
ENSXCOG00000004022	larp1	95	84.783	ENSACIG00000012994	larp1	86	84.783	Amphilophus_citrinellus
ENSXCOG00000004022	larp1	81	81.747	ENSAOCG00000007792	larp1	90	81.771	Amphiprion_ocellaris
ENSXCOG00000004022	larp1	98	84.396	ENSAPEG00000022246	larp1	86	84.417	Amphiprion_percula
ENSXCOG00000004022	larp1	94	87.320	ENSATEG00000013523	larp1	87	83.554	Anabas_testudineus
ENSXCOG00000004022	larp1	73	78.209	ENSAPLG00000007559	LARP1	76	78.358	Anas_platyrhynchos
ENSXCOG00000004022	larp1	80	72.959	ENSACAG00000004071	LARP1	98	64.779	Anolis_carolinensis
ENSXCOG00000004022	larp1	76	74.366	ENSANAG00000029949	LARP1	78	71.638	Aotus_nancymaae
ENSXCOG00000004022	larp1	98	85.135	ENSACLG00000015256	larp1	88	85.155	Astatotilapia_calliptera
ENSXCOG00000004022	larp1	94	82.077	ENSAMXG00000000859	larp1	85	82.011	Astyanax_mexicanus
ENSXCOG00000004022	larp1	93	75.317	ENSBTAG00000008443	LARP1	82	74.654	Bos_taurus
ENSXCOG00000004022	larp1	93	74.366	ENSCJAG00000004454	LARP1	82	73.961	Callithrix_jacchus
ENSXCOG00000004022	larp1	76	75.070	ENSCAFG00000017639	LARP1	75	74.515	Canis_familiaris
ENSXCOG00000004022	larp1	76	75.070	ENSCAFG00020023860	LARP1	82	73.144	Canis_lupus_dingo
ENSXCOG00000004022	larp1	93	75.035	ENSCHIG00000014414	LARP1	84	72.727	Capra_hircus
ENSXCOG00000004022	larp1	80	73.450	ENSTSYG00000013732	LARP1	79	73.450	Carlito_syrichta
ENSXCOG00000004022	larp1	72	73.997	ENSCAPG00000013865	LARP1	68	73.997	Cavia_aperea
ENSXCOG00000004022	larp1	76	75.211	ENSCPOG00000003377	LARP1	75	74.654	Cavia_porcellus
ENSXCOG00000004022	larp1	93	74.366	ENSCCAG00000025201	LARP1	82	73.961	Cebus_capucinus
ENSXCOG00000004022	larp1	93	74.017	ENSCATG00000030675	LARP1	85	73.655	Cercocebus_atys
ENSXCOG00000004022	larp1	79	73.144	ENSCLAG00000012755	LARP1	79	73.082	Chinchilla_lanigera
ENSXCOG00000004022	larp1	76	74.157	ENSCSAG00000010800	LARP1	86	72.446	Chlorocebus_sabaeus
ENSXCOG00000004022	larp1	79	65.224	ENSCHOG00000012716	LARP1	75	65.224	Choloepus_hoffmanni
ENSXCOG00000004022	larp1	86	76.217	ENSCPBG00000002173	LARP1	80	75.305	Chrysemys_picta_bellii
ENSXCOG00000004022	larp1	76	74.471	ENSCANG00000037418	LARP1	70	73.961	Colobus_angolensis_palliatus
ENSXCOG00000004022	larp1	97	73.378	ENSCGRG00001016913	Larp1	83	73.378	Cricetulus_griseus_chok1gshd
ENSXCOG00000004022	larp1	76	73.072	ENSCGRG00000009916	Larp1	77	73.072	Cricetulus_griseus_crigri
ENSXCOG00000004022	larp1	99	81.890	ENSCSEG00000016431	larp1	87	82.222	Cynoglossus_semilaevis
ENSXCOG00000004022	larp1	98	86.461	ENSCVAG00000022687	larp1	88	84.319	Cyprinodon_variegatus
ENSXCOG00000004022	larp1	88	77.490	ENSDARG00000101722	larp1	83	77.520	Danio_rerio
ENSXCOG00000004022	larp1	97	73.009	ENSDNOG00000012073	LARP1	84	73.009	Dasypus_novemcinctus
ENSXCOG00000004022	larp1	77	73.793	ENSDORG00000002897	Larp1	77	73.793	Dipodomys_ordii
ENSXCOG00000004022	larp1	72	75.775	ENSETEG00000020251	LARP1	76	75.775	Echinops_telfairi
ENSXCOG00000004022	larp1	93	75.211	ENSEASG00005001070	LARP1	88	74.412	Equus_asinus_asinus
ENSXCOG00000004022	larp1	93	75.211	ENSECAG00000017002	LARP1	69	74.515	Equus_caballus
ENSXCOG00000004022	larp1	76	72.458	ENSEEUG00000001065	LARP1	77	71.806	Erinaceus_europaeus
ENSXCOG00000004022	larp1	98	79.893	ENSELUG00000019403	larp1	87	80.371	Esox_lucius
ENSXCOG00000004022	larp1	93	74.860	ENSFCAG00000000592	LARP1	82	74.515	Felis_catus
ENSXCOG00000004022	larp1	81	74.966	ENSFALG00000008335	LARP1	92	74.040	Ficedula_albicollis
ENSXCOG00000004022	larp1	76	75.070	ENSFDAG00000021125	LARP1	75	74.515	Fukomys_damarensis
ENSXCOG00000004022	larp1	54	84.923	ENSFHEG00000020307	larp1	92	80.564	Fundulus_heteroclitus
ENSXCOG00000004022	larp1	95	77.305	ENSGALG00000040109	LARP1	83	77.447	Gallus_gallus
ENSXCOG00000004022	larp1	98	74.763	ENSGAGG00000025113	LARP1	85	75.034	Gopherus_agassizii
ENSXCOG00000004022	larp1	76	74.294	ENSGGOG00000006048	LARP1	70	73.889	Gorilla_gorilla
ENSXCOG00000004022	larp1	99	82.984	ENSHBUG00000020762	larp1	87	85.753	Haplochromis_burtoni
ENSXCOG00000004022	larp1	94	74.341	ENSHGLG00000006267	LARP1	82	74.341	Heterocephalus_glaber_female
ENSXCOG00000004022	larp1	77	74.341	ENSHGLG00100014230	-	75	74.341	Heterocephalus_glaber_male
ENSXCOG00000004022	larp1	75	63.636	ENSHGLG00100003395	-	69	62.534	Heterocephalus_glaber_male
ENSXCOG00000004022	larp1	86	91.228	ENSHCOG00000010786	larp1	83	89.078	Hippocampus_comes
ENSXCOG00000004022	larp1	87	77.324	ENSIPUG00000019105	Larp1	83	76.171	Ictalurus_punctatus
ENSXCOG00000004022	larp1	76	75.035	ENSSTOG00000005678	LARP1	78	74.345	Ictidomys_tridecemlineatus
ENSXCOG00000004022	larp1	93	70.014	ENSJJAG00000016950	Larp1	81	69.535	Jaculus_jaculus
ENSXCOG00000004022	larp1	98	86.739	ENSKMAG00000018468	larp1	88	87.045	Kryptolebias_marmoratus
ENSXCOG00000004022	larp1	97	85.734	ENSLBEG00000027172	larp1	85	84.993	Labrus_bergylta
ENSXCOG00000004022	larp1	91	81.081	ENSLOCG00000012457	larp1	85	81.859	Lepisosteus_oculatus
ENSXCOG00000004022	larp1	96	72.207	ENSLAFG00000008991	LARP1	83	72.207	Loxodonta_africana
ENSXCOG00000004022	larp1	76	74.471	ENSMFAG00000031651	LARP1	70	74.100	Macaca_fascicularis
ENSXCOG00000004022	larp1	76	74.157	ENSMMUG00000009411	LARP1	78	73.793	Macaca_mulatta
ENSXCOG00000004022	larp1	76	74.471	ENSMNEG00000039294	LARP1	80	74.100	Macaca_nemestrina
ENSXCOG00000004022	larp1	76	74.330	ENSMLEG00000035142	LARP1	70	73.961	Mandrillus_leucophaeus
ENSXCOG00000004022	larp1	99	81.866	ENSMAMG00000021788	larp1	85	83.962	Mastacembelus_armatus
ENSXCOG00000004022	larp1	99	82.315	ENSMZEG00005009345	larp1	87	82.338	Maylandia_zebra
ENSXCOG00000004022	larp1	80	74.966	ENSMGAG00000005696	LARP1	80	73.907	Meleagris_gallopavo
ENSXCOG00000004022	larp1	97	73.378	ENSMAUG00000001385	Larp1	83	73.378	Mesocricetus_auratus
ENSXCOG00000004022	larp1	78	73.806	ENSMICG00000000837	LARP1	87	74.377	Microcebus_murinus
ENSXCOG00000004022	larp1	97	73.243	ENSMOCG00000008920	Larp1	83	73.243	Microtus_ochrogaster
ENSXCOG00000004022	larp1	91	64.815	ENSMMOG00000013364	larp1	87	68.279	Mola_mola
ENSXCOG00000004022	larp1	79	72.629	ENSMODG00000008663	LARP1	77	72.727	Monodelphis_domestica
ENSXCOG00000004022	larp1	99	83.399	ENSMALG00000017180	larp1	83	85.986	Monopterus_albus
ENSXCOG00000004022	larp1	97	73.108	MGP_CAROLIEiJ_G0016383	Larp1	83	73.108	Mus_caroli
ENSXCOG00000004022	larp1	97	73.243	ENSMUSG00000037331	Larp1	83	73.243	Mus_musculus
ENSXCOG00000004022	larp1	97	73.243	MGP_PahariEiJ_G0017518	Larp1	83	73.243	Mus_pahari
ENSXCOG00000004022	larp1	97	73.243	MGP_SPRETEiJ_G0017225	Larp1	83	73.243	Mus_spretus
ENSXCOG00000004022	larp1	76	73.492	ENSMPUG00000013564	LARP1	81	73.492	Mustela_putorius_furo
ENSXCOG00000004022	larp1	77	70.000	ENSMLUG00000002608	LARP1	76	70.137	Myotis_lucifugus
ENSXCOG00000004022	larp1	78	74.074	ENSNGAG00000001098	Larp1	78	74.074	Nannospalax_galili
ENSXCOG00000004022	larp1	88	86.876	ENSNBRG00000008963	larp1	84	86.895	Neolamprologus_brichardi
ENSXCOG00000004022	larp1	78	72.678	ENSNLEG00000016588	LARP1	81	72.237	Nomascus_leucogenys
ENSXCOG00000004022	larp1	79	70.248	ENSMEUG00000002957	LARP1	77	70.248	Notamacropus_eugenii
ENSXCOG00000004022	larp1	76	74.648	ENSOPRG00000013014	LARP1	76	73.098	Ochotona_princeps
ENSXCOG00000004022	larp1	77	74.616	ENSODEG00000010824	LARP1	77	73.217	Octodon_degus
ENSXCOG00000004022	larp1	97	84.532	ENSONIG00000017308	larp1	84	84.553	Oreochromis_niloticus
ENSXCOG00000004022	larp1	81	73.280	ENSOANG00000005096	LARP1	77	72.409	Ornithorhynchus_anatinus
ENSXCOG00000004022	larp1	95	73.931	ENSOCUG00000013066	LARP1	85	74.069	Oryctolagus_cuniculus
ENSXCOG00000004022	larp1	99	81.266	ENSORLG00000000824	larp1	88	83.356	Oryzias_latipes
ENSXCOG00000004022	larp1	99	81.398	ENSORLG00020022241	larp1	86	81.423	Oryzias_latipes_hni
ENSXCOG00000004022	larp1	99	81.398	ENSORLG00015007538	larp1	88	80.233	Oryzias_latipes_hsok
ENSXCOG00000004022	larp1	99	81.530	ENSOMEG00000003134	larp1	88	80.362	Oryzias_melastigma
ENSXCOG00000004022	larp1	79	73.009	ENSOGAG00000016750	LARP1	77	73.009	Otolemur_garnettii
ENSXCOG00000004022	larp1	77	73.937	ENSOARG00000009893	LARP1	80	71.669	Ovis_aries
ENSXCOG00000004022	larp1	76	74.294	ENSPPAG00000042993	LARP1	70	73.889	Pan_paniscus
ENSXCOG00000004022	larp1	78	73.098	ENSPPRG00000009780	LARP1	73	72.788	Panthera_pardus
ENSXCOG00000004022	larp1	77	74.477	ENSPTIG00000007013	LARP1	73	73.315	Panthera_tigris_altaica
ENSXCOG00000004022	larp1	93	73.980	ENSPTRG00000017447	LARP1	85	73.582	Pan_troglodytes
ENSXCOG00000004022	larp1	93	74.017	ENSPANG00000008080	LARP1	85	73.655	Papio_anubis
ENSXCOG00000004022	larp1	93	82.808	ENSPKIG00000010096	larp1	87	79.172	Paramormyrops_kingsleyae
ENSXCOG00000004022	larp1	94	78.355	ENSPKIG00000017153	-	89	75.424	Paramormyrops_kingsleyae
ENSXCOG00000004022	larp1	90	86.474	ENSPMGG00000011599	larp1	84	84.728	Periophthalmus_magnuspinnatus
ENSXCOG00000004022	larp1	80	72.948	ENSPEMG00000022523	Larp1	79	72.948	Peromyscus_maniculatus_bairdii
ENSXCOG00000004022	larp1	93	76.034	ENSPCIG00000019242	LARP1	79	75.926	Phascolarctos_cinereus
ENSXCOG00000004022	larp1	99	93.245	ENSPFOG00000005836	larp1	86	93.245	Poecilia_formosa
ENSXCOG00000004022	larp1	99	93.377	ENSPLAG00000008936	larp1	87	93.377	Poecilia_latipinna
ENSXCOG00000004022	larp1	99	93.245	ENSPMEG00000013656	larp1	86	93.245	Poecilia_mexicana
ENSXCOG00000004022	larp1	85	92.318	ENSPREG00000005726	larp1	81	92.318	Poecilia_reticulata
ENSXCOG00000004022	larp1	76	72.984	ENSPCAG00000006407	LARP1	74	72.984	Procavia_capensis
ENSXCOG00000004022	larp1	76	67.746	ENSPCOG00000016949	LARP1	74	68.283	Propithecus_coquereli
ENSXCOG00000004022	larp1	93	75.211	ENSPVAG00000002262	LARP1	82	74.515	Pteropus_vampyrus
ENSXCOG00000004022	larp1	99	82.445	ENSPNYG00000007938	larp1	87	82.468	Pundamilia_nyererei
ENSXCOG00000004022	larp1	97	80.221	ENSPNAG00000021427	larp1	86	80.165	Pygocentrus_nattereri
ENSXCOG00000004022	larp1	80	72.813	ENSRNOG00000031544	Larp1	79	72.813	Rattus_norvegicus
ENSXCOG00000004022	larp1	76	74.330	ENSRBIG00000038005	LARP1	70	73.961	Rhinopithecus_bieti
ENSXCOG00000004022	larp1	76	74.330	ENSRROG00000034073	LARP1	80	73.961	Rhinopithecus_roxellana
ENSXCOG00000004022	larp1	76	74.366	ENSSBOG00000019816	LARP1	80	72.312	Saimiri_boliviensis_boliviensis
ENSXCOG00000004022	larp1	79	73.907	ENSSHAG00000011115	LARP1	77	74.008	Sarcophilus_harrisii
ENSXCOG00000004022	larp1	83	75.729	ENSSFOG00015020304	larp1	78	75.762	Scleropages_formosus
ENSXCOG00000004022	larp1	96	80.258	ENSSFOG00015018058	-	85	80.199	Scleropages_formosus
ENSXCOG00000004022	larp1	91	88.136	ENSSMAG00000007468	larp1	86	86.617	Scophthalmus_maximus
ENSXCOG00000004022	larp1	99	82.445	ENSSDUG00000000268	larp1	88	84.966	Seriola_dumerili
ENSXCOG00000004022	larp1	81	84.812	ENSSLDG00000016505	larp1	88	84.832	Seriola_lalandi_dorsalis
ENSXCOG00000004022	larp1	61	82.591	ENSSARG00000013907	-	87	76.812	Sorex_araneus
ENSXCOG00000004022	larp1	98	75.237	ENSSPUG00000012179	-	86	75.372	Sphenodon_punctatus
ENSXCOG00000004022	larp1	99	81.865	ENSSPAG00000003910	larp1	87	81.889	Stegastes_partitus
ENSXCOG00000004022	larp1	93	74.719	ENSSSCG00000017069	LARP1	83	74.069	Sus_scrofa
ENSXCOG00000004022	larp1	76	75.955	ENSTGUG00000000704	LARP1	77	76.096	Taeniopygia_guttata
ENSXCOG00000004022	larp1	98	85.399	ENSTRUG00000009470	larp1	86	85.420	Takifugu_rubripes
ENSXCOG00000004022	larp1	72	74.184	ENSTBEG00000003381	LARP1	76	74.184	Tupaia_belangeri
ENSXCOG00000004022	larp1	81	72.112	ENSTTRG00000015934	LARP1	77	72.776	Tursiops_truncatus
ENSXCOG00000004022	larp1	93	74.930	ENSUAMG00000019334	LARP1	82	74.238	Ursus_americanus
ENSXCOG00000004022	larp1	76	74.860	ENSUMAG00000002934	LARP1	77	77.594	Ursus_maritimus
ENSXCOG00000004022	larp1	76	75.070	ENSVVUG00000004644	LARP1	82	73.144	Vulpes_vulpes
ENSXCOG00000004022	larp1	94	74.431	ENSXETG00000008413	larp1	89	72.102	Xenopus_tropicalis
ENSXCOG00000004022	larp1	99	94.834	ENSXMAG00000018780	larp1	86	94.834	Xiphophorus_maculatus