EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000004379 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 16469 bases
Position: chrKQ557218.1:2436835-2453303
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000005622	EST1	PF10374.9	3.4e-24	1	1
ENSXCOP00000005621	EST1	PF10374.9	3.7e-24	1	1
ENSXCOP00000005621	EST1_DNA_bind	PF10373.9	1.6e-36	1	1
ENSXCOP00000005622	EST1_DNA_bind	PF10373.9	1.8e-36	1	1
ENSXCOP00000005622	PIN_4	PF13638.6	2.8e-06	1	1
ENSXCOP00000005621	PIN_4	PF13638.6	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000005687	-	2892	-	ENSXCOP00000005621	963 (aa)	-	-
ENSXCOT00000005688	-	2724	-	ENSXCOP00000005622	907 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000004379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004379's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000004379	smg5	95	68.681	ENSG00000198952	SMG5	76	75.339	Homo_sapiens
ENSXCOG00000004379	smg5	100	91.892	ENSAPOG00000019690	smg5	92	91.892	Acanthochromis_polyacanthus
ENSXCOG00000004379	smg5	93	69.231	ENSAMEG00000014458	SMG5	67	76.866	Ailuropoda_melanoleuca
ENSXCOG00000004379	smg5	98	94.505	ENSACIG00000001353	smg5	80	94.505	Amphilophus_citrinellus
ENSXCOG00000004379	smg5	100	91.892	ENSAOCG00000019483	smg5	92	91.892	Amphiprion_ocellaris
ENSXCOG00000004379	smg5	100	91.892	ENSAPEG00000022949	smg5	92	91.892	Amphiprion_percula
ENSXCOG00000004379	smg5	100	90.811	ENSATEG00000005348	smg5	91	90.811	Anabas_testudineus
ENSXCOG00000004379	smg5	93	69.231	ENSAPLG00000010263	SMG5	77	68.649	Anas_platyrhynchos
ENSXCOG00000004379	smg5	50	58.772	ENSACAG00000015999	-	100	57.883	Anolis_carolinensis
ENSXCOG00000004379	smg5	99	92.857	ENSACLG00000009311	smg5	92	91.892	Astatotilapia_calliptera
ENSXCOG00000004379	smg5	100	88.108	ENSAMXG00000024616	smg5	92	88.108	Astyanax_mexicanus
ENSXCOG00000004379	smg5	65	50.608	ENSBTAG00000021747	-	59	50.363	Bos_taurus
ENSXCOG00000004379	smg5	96	68.132	ENSBTAG00000009435	SMG5	61	76.322	Bos_taurus
ENSXCOG00000004379	smg5	95	69.231	ENSCAFG00000016839	SMG5	69	75.286	Canis_familiaris
ENSXCOG00000004379	smg5	95	69.231	ENSCAFG00020006061	SMG5	69	75.286	Canis_lupus_dingo
ENSXCOG00000004379	smg5	96	68.132	ENSCHIG00000007709	SMG5	59	78.199	Capra_hircus
ENSXCOG00000004379	smg5	64	50.868	ENSCHIG00000006323	-	59	50.868	Capra_hircus
ENSXCOG00000004379	smg5	96	68.681	ENSTSYG00000004099	SMG5	60	76.552	Carlito_syrichta
ENSXCOG00000004379	smg5	92	60.989	ENSCAPG00000003631	SMG5	65	60.989	Cavia_aperea
ENSXCOG00000004379	smg5	95	69.780	ENSCPOG00000015696	SMG5	60	75.862	Cavia_porcellus
ENSXCOG00000004379	smg5	88	71.978	ENSCPBG00000025848	SMG5	76	71.351	Chrysemys_picta_bellii
ENSXCOG00000004379	smg5	57	49.600	ENSCING00000008706	-	54	49.600	Ciona_intestinalis
ENSXCOG00000004379	smg5	96	70.330	ENSCGRG00001006336	Smg5	60	75.231	Cricetulus_griseus_chok1gshd
ENSXCOG00000004379	smg5	94	70.330	ENSCGRG00000005111	Smg5	60	74.762	Cricetulus_griseus_crigri
ENSXCOG00000004379	smg5	100	88.649	ENSCSEG00000014220	smg5	91	88.649	Cynoglossus_semilaevis
ENSXCOG00000004379	smg5	95	95.604	ENSCVAG00000000529	smg5	75	95.604	Cyprinodon_variegatus
ENSXCOG00000004379	smg5	99	85.714	ENSDARG00000041481	smg5	81	84.865	Danio_rerio
ENSXCOG00000004379	smg5	57	39.791	ENSDNOG00000039862	-	58	38.363	Dasypus_novemcinctus
ENSXCOG00000004379	smg5	81	78.836	ENSDNOG00000000051	SMG5	70	69.231	Dasypus_novemcinctus
ENSXCOG00000004379	smg5	85	83.133	ENSETEG00000010336	SMG5	55	83.133	Echinops_telfairi
ENSXCOG00000004379	smg5	56	68.519	ENSEBUG00000003739	smg5	55	68.519	Eptatretus_burgeri
ENSXCOG00000004379	smg5	95	68.681	ENSEASG00005019122	SMG5	60	76.552	Equus_asinus_asinus
ENSXCOG00000004379	smg5	95	68.681	ENSECAG00000001389	SMG5	69	70.362	Equus_caballus
ENSXCOG00000004379	smg5	59	78.873	ENSEEUG00000012690	SMG5	54	77.966	Erinaceus_europaeus
ENSXCOG00000004379	smg5	100	88.710	ENSELUG00000012585	smg5	92	88.710	Esox_lucius
ENSXCOG00000004379	smg5	96	69.231	ENSFCAG00000011783	SMG5	60	76.334	Felis_catus
ENSXCOG00000004379	smg5	74	61.347	ENSFALG00000001166	-	96	61.832	Ficedula_albicollis
ENSXCOG00000004379	smg5	97	97.253	ENSFHEG00000013939	smg5	80	97.253	Fundulus_heteroclitus
ENSXCOG00000004379	smg5	99	87.912	ENSGMOG00000007310	smg5	92	87.027	Gadus_morhua
ENSXCOG00000004379	smg5	53	51.724	ENSGALG00000049544	-	85	50.412	Gallus_gallus
ENSXCOG00000004379	smg5	98	70.330	ENSGALG00000029918	-	85	69.730	Gallus_gallus
ENSXCOG00000004379	smg5	100	100.000	ENSGAFG00000021691	smg5	91	100.000	Gambusia_affinis
ENSXCOG00000004379	smg5	99	90.659	ENSGACG00000013142	smg5	86	89.730	Gasterosteus_aculeatus
ENSXCOG00000004379	smg5	95	71.429	ENSGAGG00000016131	SMG5	57	78.998	Gopherus_agassizii
ENSXCOG00000004379	smg5	95	68.681	ENSGGOG00000010932	SMG5	76	75.339	Gorilla_gorilla
ENSXCOG00000004379	smg5	99	93.956	ENSHBUG00000008654	smg5	92	92.973	Haplochromis_burtoni
ENSXCOG00000004379	smg5	95	68.681	ENSHGLG00000019152	SMG5	84	76.596	Heterocephalus_glaber_female
ENSXCOG00000004379	smg5	84	81.928	ENSHGLG00100015948	SMG5	82	80.233	Heterocephalus_glaber_male
ENSXCOG00000004379	smg5	89	75.824	ENSHCOG00000010229	smg5	72	81.473	Hippocampus_comes
ENSXCOG00000004379	smg5	99	86.264	ENSIPUG00000006624	Smg5	81	86.264	Ictalurus_punctatus
ENSXCOG00000004379	smg5	95	69.231	ENSSTOG00000001780	SMG5	70	74.944	Ictidomys_tridecemlineatus
ENSXCOG00000004379	smg5	95	70.879	ENSJJAG00000022763	Smg5	59	76.722	Jaculus_jaculus
ENSXCOG00000004379	smg5	100	91.892	ENSKMAG00000014586	smg5	92	91.892	Kryptolebias_marmoratus
ENSXCOG00000004379	smg5	99	92.308	ENSLBEG00000002145	smg5	92	91.351	Labrus_bergylta
ENSXCOG00000004379	smg5	99	54.787	ENSLACG00000010521	SMG5	78	56.710	Latimeria_chalumnae
ENSXCOG00000004379	smg5	99	69.093	ENSLOCG00000008380	smg5	92	62.209	Lepisosteus_oculatus
ENSXCOG00000004379	smg5	95	68.681	ENSMMUG00000000090	SMG5	76	75.510	Macaca_mulatta
ENSXCOG00000004379	smg5	95	68.681	ENSMLEG00000041192	SMG5	82	68.108	Mandrillus_leucophaeus
ENSXCOG00000004379	smg5	100	91.351	ENSMAMG00000010683	smg5	92	91.351	Mastacembelus_armatus
ENSXCOG00000004379	smg5	56	93.956	ENSMZEG00005016543	smg5	70	93.956	Maylandia_zebra
ENSXCOG00000004379	smg5	96	79.310	ENSMZEG00005015815	smg5	79	80.321	Maylandia_zebra
ENSXCOG00000004379	smg5	95	71.429	ENSMAUG00000010381	Smg5	60	75.000	Mesocricetus_auratus
ENSXCOG00000004379	smg5	96	70.330	ENSMOCG00000016590	Smg5	59	77.033	Microtus_ochrogaster
ENSXCOG00000004379	smg5	99	91.758	ENSMMOG00000017199	smg5	91	90.811	Mola_mola
ENSXCOG00000004379	smg5	65	39.773	ENSMODG00000004735	-	68	39.773	Monodelphis_domestica
ENSXCOG00000004379	smg5	65	40.782	ENSMODG00000004511	-	61	40.957	Monodelphis_domestica
ENSXCOG00000004379	smg5	82	81.132	ENSMODG00000016901	SMG5	54	78.571	Monodelphis_domestica
ENSXCOG00000004379	smg5	67	41.341	ENSMODG00000004532	-	71	41.489	Monodelphis_domestica
ENSXCOG00000004379	smg5	62	38.674	ENSMODG00000010675	-	65	39.267	Monodelphis_domestica
ENSXCOG00000004379	smg5	100	91.892	ENSMALG00000010375	smg5	91	91.892	Monopterus_albus
ENSXCOG00000004379	smg5	99	70.330	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSXCOG00000004379	smg5	96	70.330	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSXCOG00000004379	smg5	96	70.330	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSXCOG00000004379	smg5	96	70.330	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSXCOG00000004379	smg5	89	67.582	ENSMPUG00000004546	SMG5	67	75.487	Mustela_putorius_furo
ENSXCOG00000004379	smg5	95	68.681	ENSMLUG00000008518	SMG5	70	75.566	Myotis_lucifugus
ENSXCOG00000004379	smg5	64	50.370	ENSNGAG00000012101	-	59	50.123	Nannospalax_galili
ENSXCOG00000004379	smg5	94	69.780	ENSNGAG00000020706	Smg5	75	75.342	Nannospalax_galili
ENSXCOG00000004379	smg5	92	95.918	ENSNBRG00000004332	smg5	78	95.918	Neolamprologus_brichardi
ENSXCOG00000004379	smg5	95	68.681	ENSNLEG00000012439	SMG5	76	75.566	Nomascus_leucogenys
ENSXCOG00000004379	smg5	95	67.582	ENSOPRG00000009152	SMG5	59	78.385	Ochotona_princeps
ENSXCOG00000004379	smg5	95	69.231	ENSODEG00000012237	SMG5	68	77.778	Octodon_degus
ENSXCOG00000004379	smg5	100	92.973	ENSONIG00000008632	smg5	92	92.973	Oreochromis_niloticus
ENSXCOG00000004379	smg5	54	48.276	ENSOCUG00000023338	-	54	48.276	Oryctolagus_cuniculus
ENSXCOG00000004379	smg5	93	68.132	ENSOCUG00000012886	SMG5	60	76.247	Oryctolagus_cuniculus
ENSXCOG00000004379	smg5	99	89.560	ENSORLG00000016239	smg5	81	89.560	Oryzias_latipes
ENSXCOG00000004379	smg5	99	90.110	ENSORLG00020013127	smg5	81	90.110	Oryzias_latipes_hni
ENSXCOG00000004379	smg5	99	89.560	ENSORLG00015019014	smg5	81	89.560	Oryzias_latipes_hsok
ENSXCOG00000004379	smg5	79	83.471	ENSOMEG00000021330	smg5	93	71.906	Oryzias_melastigma
ENSXCOG00000004379	smg5	65	51.090	ENSOARG00000011963	-	59	51.090	Ovis_aries
ENSXCOG00000004379	smg5	96	68.132	ENSOARG00000005778	SMG5	59	78.199	Ovis_aries
ENSXCOG00000004379	smg5	95	68.681	ENSPPAG00000011996	SMG5	76	75.113	Pan_paniscus
ENSXCOG00000004379	smg5	94	69.231	ENSPPRG00000011901	SMG5	73	75.656	Panthera_pardus
ENSXCOG00000004379	smg5	93	66.474	ENSPTIG00000007892	SMG5	70	72.727	Panthera_tigris_altaica
ENSXCOG00000004379	smg5	95	68.681	ENSPTRG00000023925	SMG5	76	75.113	Pan_troglodytes
ENSXCOG00000004379	smg5	95	68.681	ENSPTRG00000049282	-	76	75.113	Pan_troglodytes
ENSXCOG00000004379	smg5	99	86.264	ENSPKIG00000009402	smg5	86	85.405	Paramormyrops_kingsleyae
ENSXCOG00000004379	smg5	93	71.429	ENSPSIG00000015198	SMG5	58	79.851	Pelodiscus_sinensis
ENSXCOG00000004379	smg5	99	83.516	ENSPMGG00000010465	smg5	81	83.516	Periophthalmus_magnuspinnatus
ENSXCOG00000004379	smg5	96	69.780	ENSPEMG00000001819	Smg5	60	75.463	Peromyscus_maniculatus_bairdii
ENSXCOG00000004379	smg5	64	62.654	ENSPMAG00000000410	smg5	77	61.187	Petromyzon_marinus
ENSXCOG00000004379	smg5	99	98.901	ENSPFOG00000010191	smg5	91	97.838	Poecilia_formosa
ENSXCOG00000004379	smg5	99	98.901	ENSPLAG00000009332	smg5	91	97.838	Poecilia_latipinna
ENSXCOG00000004379	smg5	99	98.901	ENSPMEG00000014105	smg5	91	97.838	Poecilia_mexicana
ENSXCOG00000004379	smg5	99	99.451	ENSPREG00000017713	smg5	91	98.378	Poecilia_reticulata
ENSXCOG00000004379	smg5	95	68.681	ENSPPYG00000000723	SMG5	76	75.339	Pongo_abelii
ENSXCOG00000004379	smg5	95	68.681	ENSPCOG00000004741	SMG5	60	76.620	Propithecus_coquereli
ENSXCOG00000004379	smg5	89	68.649	ENSPVAG00000016748	SMG5	70	69.231	Pteropus_vampyrus
ENSXCOG00000004379	smg5	99	93.956	ENSPNYG00000013397	smg5	92	92.973	Pundamilia_nyererei
ENSXCOG00000004379	smg5	99	87.912	ENSPNAG00000028363	smg5	81	87.027	Pygocentrus_nattereri
ENSXCOG00000004379	smg5	99	69.780	ENSRNOG00000019590	Smg5	59	76.850	Rattus_norvegicus
ENSXCOG00000004379	smg5	64	38.251	ENSSHAG00000000561	-	65	38.710	Sarcophilus_harrisii
ENSXCOG00000004379	smg5	68	40.758	ENSSHAG00000009572	-	58	40.521	Sarcophilus_harrisii
ENSXCOG00000004379	smg5	99	86.264	ENSSFOG00015024175	smg5	86	85.405	Scleropages_formosus
ENSXCOG00000004379	smg5	100	89.189	ENSSMAG00000013059	smg5	92	89.189	Scophthalmus_maximus
ENSXCOG00000004379	smg5	100	91.892	ENSSDUG00000007122	smg5	92	91.892	Seriola_dumerili
ENSXCOG00000004379	smg5	100	92.432	ENSSLDG00000011418	smg5	92	92.432	Seriola_lalandi_dorsalis
ENSXCOG00000004379	smg5	84	80.723	ENSSARG00000012484	SMG5	56	80.723	Sorex_araneus
ENSXCOG00000004379	smg5	88	68.681	ENSSPUG00000002260	SMG5	75	68.108	Sphenodon_punctatus
ENSXCOG00000004379	smg5	100	90.811	ENSSPAG00000014266	smg5	92	90.811	Stegastes_partitus
ENSXCOG00000004379	smg5	89	57.592	ENSSSCG00000039308	-	60	57.592	Sus_scrofa
ENSXCOG00000004379	smg5	95	69.231	ENSSSCG00000006490	-	75	70.136	Sus_scrofa
ENSXCOG00000004379	smg5	94	69.231	ENSTGUG00000003748	-	76	68.649	Taeniopygia_guttata
ENSXCOG00000004379	smg5	100	89.247	ENSTRUG00000012580	smg5	92	89.247	Takifugu_rubripes
ENSXCOG00000004379	smg5	99	89.617	ENSTNIG00000010303	smg5	81	89.617	Tetraodon_nigroviridis
ENSXCOG00000004379	smg5	96	59.890	ENSTTRG00000001401	SMG5	59	72.209	Tursiops_truncatus
ENSXCOG00000004379	smg5	94	69.231	ENSUAMG00000013721	SMG5	76	68.649	Ursus_americanus
ENSXCOG00000004379	smg5	90	74.029	ENSUMAG00000018041	SMG5	77	68.649	Ursus_maritimus
ENSXCOG00000004379	smg5	94	69.231	ENSVPAG00000009446	SMG5	75	69.231	Vicugna_pacos
ENSXCOG00000004379	smg5	95	69.231	ENSVVUG00000005887	SMG5	68	77.014	Vulpes_vulpes
ENSXCOG00000004379	smg5	71	59.563	ENSXETG00000033791	SMG5	70	59.563	Xenopus_tropicalis
ENSXCOG00000004379	smg5	99	100.000	ENSXMAG00000013499	smg5	91	98.919	Xiphophorus_maculatus