EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000004478 (Gene tree)
Gene ID: -
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 6194 bases
Position: chrKQ557218.1:3173278-3179471
Accession: ZDB-GENE-030131-4482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000005749	zf-U11-48K	PF05253.12	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000005815	-	972	-	ENSXCOP00000005749	323 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000004478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004478's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000004478	snrnp48	69	51.064	ENSG00000168566	SNRNP48	77	44.737	Homo_sapiens
ENSXCOG00000004478	snrnp48	95	67.077	ENSAPOG00000021430	snrnp48	70	78.059	Acanthochromis_polyacanthus
ENSXCOG00000004478	snrnp48	68	49.558	ENSAMEG00000017349	SNRNP48	65	49.558	Ailuropoda_melanoleuca
ENSXCOG00000004478	snrnp48	93	64.151	ENSACIG00000002032	snrnp48	95	61.755	Amphilophus_citrinellus
ENSXCOG00000004478	snrnp48	95	67.178	ENSAOCG00000010562	snrnp48	95	65.644	Amphiprion_ocellaris
ENSXCOG00000004478	snrnp48	95	66.667	ENSAPEG00000003231	snrnp48	95	66.049	Amphiprion_percula
ENSXCOG00000004478	snrnp48	93	69.876	ENSATEG00000020210	snrnp48	69	81.116	Anabas_testudineus
ENSXCOG00000004478	snrnp48	83	43.421	ENSACAG00000002811	SNRNP48	57	55.676	Anolis_carolinensis
ENSXCOG00000004478	snrnp48	69	51.489	ENSANAG00000033538	SNRNP48	67	51.739	Aotus_nancymaae
ENSXCOG00000004478	snrnp48	93	53.376	ENSAMXG00000015309	snrnp48	72	64.017	Astyanax_mexicanus
ENSXCOG00000004478	snrnp48	91	41.033	ENSBTAG00000001123	SNRNP48	66	48.908	Bos_taurus
ENSXCOG00000004478	snrnp48	69	51.489	ENSCJAG00000021330	SNRNP48	67	51.739	Callithrix_jacchus
ENSXCOG00000004478	snrnp48	68	49.339	ENSCAFG00000009574	SNRNP48	55	49.339	Canis_familiaris
ENSXCOG00000004478	snrnp48	68	49.339	ENSCAFG00020013203	SNRNP48	66	49.339	Canis_lupus_dingo
ENSXCOG00000004478	snrnp48	67	48.673	ENSCHIG00000015216	SNRNP48	66	48.908	Capra_hircus
ENSXCOG00000004478	snrnp48	69	50.435	ENSTSYG00000000698	SNRNP48	67	50.435	Carlito_syrichta
ENSXCOG00000004478	snrnp48	62	50.000	ENSCAPG00000006768	SNRNP48	67	50.000	Cavia_aperea
ENSXCOG00000004478	snrnp48	69	50.870	ENSCPOG00000007910	SNRNP48	67	50.870	Cavia_porcellus
ENSXCOG00000004478	snrnp48	68	50.862	ENSCCAG00000035652	SNRNP48	69	49.787	Cebus_capucinus
ENSXCOG00000004478	snrnp48	69	50.638	ENSCATG00000033947	SNRNP48	79	44.737	Cercocebus_atys
ENSXCOG00000004478	snrnp48	69	51.304	ENSCLAG00000003765	SNRNP48	69	49.787	Chinchilla_lanigera
ENSXCOG00000004478	snrnp48	69	51.739	ENSCSAG00000007409	SNRNP48	67	51.739	Chlorocebus_sabaeus
ENSXCOG00000004478	snrnp48	56	55.135	ENSCPBG00000019146	SNRNP48	58	55.135	Chrysemys_picta_bellii
ENSXCOG00000004478	snrnp48	69	51.489	ENSCANG00000030017	SNRNP48	67	51.739	Colobus_angolensis_palliatus
ENSXCOG00000004478	snrnp48	84	38.408	ENSCGRG00001008805	-	71	42.731	Cricetulus_griseus_chok1gshd
ENSXCOG00000004478	snrnp48	71	49.787	ENSCGRG00001001076	-	69	49.787	Cricetulus_griseus_chok1gshd
ENSXCOG00000004478	snrnp48	71	49.787	ENSCGRG00000007781	Snrnp48	69	49.787	Cricetulus_griseus_crigri
ENSXCOG00000004478	snrnp48	93	57.944	ENSCSEG00000000722	snrnp48	90	58.675	Cynoglossus_semilaevis
ENSXCOG00000004478	snrnp48	87	72.468	ENSCVAG00000019829	snrnp48	84	71.605	Cyprinodon_variegatus
ENSXCOG00000004478	snrnp48	91	49.080	ENSDARG00000039989	snrnp48	67	59.130	Danio_rerio
ENSXCOG00000004478	snrnp48	68	49.561	ENSDNOG00000014978	SNRNP48	81	43.750	Dasypus_novemcinctus
ENSXCOG00000004478	snrnp48	69	49.351	ENSDORG00000015140	Snrnp48	67	48.918	Dipodomys_ordii
ENSXCOG00000004478	snrnp48	69	50.000	ENSEASG00005012021	SNRNP48	67	50.000	Equus_asinus_asinus
ENSXCOG00000004478	snrnp48	69	50.000	ENSECAG00000026937	SNRNP48	67	50.000	Equus_caballus
ENSXCOG00000004478	snrnp48	56	39.153	ENSEEUG00000015437	SNRNP48	55	39.153	Erinaceus_europaeus
ENSXCOG00000004478	snrnp48	68	49.339	ENSFCAG00000018853	SNRNP48	66	49.339	Felis_catus
ENSXCOG00000004478	snrnp48	56	59.140	ENSFALG00000007797	SNRNP48	58	59.140	Ficedula_albicollis
ENSXCOG00000004478	snrnp48	69	50.870	ENSFDAG00000009231	SNRNP48	67	50.870	Fukomys_damarensis
ENSXCOG00000004478	snrnp48	57	90.270	ENSFHEG00000014647	snrnp48	95	72.924	Fundulus_heteroclitus
ENSXCOG00000004478	snrnp48	72	69.528	ENSGMOG00000018599	-	72	70.130	Gadus_morhua
ENSXCOG00000004478	snrnp48	56	58.602	ENSGALG00000013005	SNRNP48	62	58.602	Gallus_gallus
ENSXCOG00000004478	snrnp48	95	86.503	ENSGAFG00000021639	snrnp48	95	86.503	Gambusia_affinis
ENSXCOG00000004478	snrnp48	72	76.068	ENSGACG00000017756	-	69	76.724	Gasterosteus_aculeatus
ENSXCOG00000004478	snrnp48	59	53.093	ENSGAGG00000000865	SNRNP48	63	53.093	Gopherus_agassizii
ENSXCOG00000004478	snrnp48	69	51.489	ENSGGOG00000013220	SNRNP48	67	51.739	Gorilla_gorilla
ENSXCOG00000004478	snrnp48	93	64.465	ENSHBUG00000017066	snrnp48	69	77.637	Haplochromis_burtoni
ENSXCOG00000004478	snrnp48	69	49.565	ENSHGLG00000015241	SNRNP48	67	49.565	Heterocephalus_glaber_female
ENSXCOG00000004478	snrnp48	69	49.565	ENSHGLG00100010027	SNRNP48	67	49.565	Heterocephalus_glaber_male
ENSXCOG00000004478	snrnp48	73	70.588	ENSHCOG00000014066	snrnp48	69	70.588	Hippocampus_comes
ENSXCOG00000004478	snrnp48	69	51.304	ENSSTOG00000014635	SNRNP48	69	49.787	Ictidomys_tridecemlineatus
ENSXCOG00000004478	snrnp48	68	50.885	ENSJJAG00000011495	Snrnp48	66	50.885	Jaculus_jaculus
ENSXCOG00000004478	snrnp48	95	70.732	ENSKMAG00000016514	snrnp48	70	81.857	Kryptolebias_marmoratus
ENSXCOG00000004478	snrnp48	73	76.891	ENSLBEG00000026249	snrnp48	70	77.311	Labrus_bergylta
ENSXCOG00000004478	snrnp48	91	47.222	ENSLACG00000003958	SNRNP48	70	53.556	Latimeria_chalumnae
ENSXCOG00000004478	snrnp48	72	61.441	ENSLOCG00000004187	snrnp48	70	61.441	Lepisosteus_oculatus
ENSXCOG00000004478	snrnp48	69	50.649	ENSLAFG00000011152	SNRNP48	67	50.649	Loxodonta_africana
ENSXCOG00000004478	snrnp48	69	51.489	ENSMFAG00000045216	SNRNP48	79	45.614	Macaca_fascicularis
ENSXCOG00000004478	snrnp48	69	51.489	ENSMMUG00000014785	SNRNP48	67	51.739	Macaca_mulatta
ENSXCOG00000004478	snrnp48	69	51.915	ENSMNEG00000042269	SNRNP48	67	52.174	Macaca_nemestrina
ENSXCOG00000004478	snrnp48	69	51.489	ENSMLEG00000034004	SNRNP48	79	45.614	Mandrillus_leucophaeus
ENSXCOG00000004478	snrnp48	95	65.231	ENSMAMG00000018673	snrnp48	62	76.050	Mastacembelus_armatus
ENSXCOG00000004478	snrnp48	56	58.065	ENSMGAG00000006037	SNRNP48	62	58.065	Meleagris_gallopavo
ENSXCOG00000004478	snrnp48	97	33.019	ENSMAUG00000011944	Snrnp48	71	48.333	Mesocricetus_auratus
ENSXCOG00000004478	snrnp48	69	50.216	ENSMICG00000012497	SNRNP48	67	50.216	Microcebus_murinus
ENSXCOG00000004478	snrnp48	93	42.771	ENSMOCG00000015555	Snrnp48	69	49.576	Microtus_ochrogaster
ENSXCOG00000004478	snrnp48	59	79.275	ENSMMOG00000003072	-	61	79.275	Mola_mola
ENSXCOG00000004478	snrnp48	72	48.133	ENSMODG00000009996	SNRNP48	65	48.133	Monodelphis_domestica
ENSXCOG00000004478	snrnp48	95	67.477	ENSMALG00000005725	snrnp48	70	77.731	Monopterus_albus
ENSXCOG00000004478	snrnp48	71	48.511	MGP_CAROLIEiJ_G0018441	Snrnp48	69	48.511	Mus_caroli
ENSXCOG00000004478	snrnp48	71	48.511	ENSMUSG00000021431	Snrnp48	69	48.511	Mus_musculus
ENSXCOG00000004478	snrnp48	71	48.936	MGP_PahariEiJ_G0019509	Snrnp48	69	48.936	Mus_pahari
ENSXCOG00000004478	snrnp48	71	48.511	MGP_SPRETEiJ_G0019321	Snrnp48	69	48.511	Mus_spretus
ENSXCOG00000004478	snrnp48	69	52.174	ENSNGAG00000004849	Snrnp48	67	52.174	Nannospalax_galili
ENSXCOG00000004478	snrnp48	93	64.465	ENSNBRG00000012127	snrnp48	69	77.215	Neolamprologus_brichardi
ENSXCOG00000004478	snrnp48	69	51.489	ENSNLEG00000011667	SNRNP48	67	51.739	Nomascus_leucogenys
ENSXCOG00000004478	snrnp48	69	50.877	ENSOPRG00000015471	SNRNP48	72	49.145	Ochotona_princeps
ENSXCOG00000004478	snrnp48	93	68.847	ENSONIG00000001520	snrnp48	69	77.637	Oreochromis_niloticus
ENSXCOG00000004478	snrnp48	58	37.799	ENSOANG00000019888	-	99	38.756	Ornithorhynchus_anatinus
ENSXCOG00000004478	snrnp48	67	50.000	ENSOCUG00000005168	SNRNP48	77	49.362	Oryctolagus_cuniculus
ENSXCOG00000004478	snrnp48	86	68.013	ENSORLG00000015654	snrnp48	69	75.949	Oryzias_latipes
ENSXCOG00000004478	snrnp48	86	67.340	ENSORLG00020015976	snrnp48	59	75.105	Oryzias_latipes_hni
ENSXCOG00000004478	snrnp48	86	67.003	ENSORLG00015022379	snrnp48	59	74.684	Oryzias_latipes_hsok
ENSXCOG00000004478	snrnp48	93	68.966	ENSOMEG00000022007	snrnp48	94	68.827	Oryzias_melastigma
ENSXCOG00000004478	snrnp48	69	50.216	ENSOGAG00000005275	SNRNP48	69	50.216	Otolemur_garnettii
ENSXCOG00000004478	snrnp48	58	52.356	ENSOARG00000017319	SNRNP48	66	52.356	Ovis_aries
ENSXCOG00000004478	snrnp48	69	51.489	ENSPPAG00000032873	SNRNP48	67	51.739	Pan_paniscus
ENSXCOG00000004478	snrnp48	69	49.565	ENSPPRG00000004283	SNRNP48	67	50.000	Panthera_pardus
ENSXCOG00000004478	snrnp48	58	52.105	ENSPTIG00000013502	SNRNP48	64	52.973	Panthera_tigris_altaica
ENSXCOG00000004478	snrnp48	69	51.489	ENSPTRG00000017703	SNRNP48	67	51.739	Pan_troglodytes
ENSXCOG00000004478	snrnp48	69	51.489	ENSPANG00000000771	SNRNP48	79	45.614	Papio_anubis
ENSXCOG00000004478	snrnp48	82	43.945	ENSPSIG00000002213	SNRNP48	58	56.383	Pelodiscus_sinensis
ENSXCOG00000004478	snrnp48	73	66.116	ENSPMGG00000008120	snrnp48	85	66.116	Periophthalmus_magnuspinnatus
ENSXCOG00000004478	snrnp48	71	50.213	ENSPEMG00000008872	Snrnp48	69	50.213	Peromyscus_maniculatus_bairdii
ENSXCOG00000004478	snrnp48	95	86.810	ENSPFOG00000003578	snrnp48	95	86.810	Poecilia_formosa
ENSXCOG00000004478	snrnp48	95	78.176	ENSPLAG00000002290	snrnp48	94	78.176	Poecilia_latipinna
ENSXCOG00000004478	snrnp48	95	87.423	ENSPMEG00000018033	snrnp48	95	87.423	Poecilia_mexicana
ENSXCOG00000004478	snrnp48	95	86.503	ENSPREG00000018541	snrnp48	95	86.503	Poecilia_reticulata
ENSXCOG00000004478	snrnp48	69	51.489	ENSPPYG00000016209	SNRNP48	67	51.739	Pongo_abelii
ENSXCOG00000004478	snrnp48	57	41.837	ENSPCAG00000011991	SNRNP48	77	42.308	Procavia_capensis
ENSXCOG00000004478	snrnp48	71	48.291	ENSPVAG00000002854	SNRNP48	69	48.291	Pteropus_vampyrus
ENSXCOG00000004478	snrnp48	92	59.935	ENSPNYG00000015399	snrnp48	76	77.637	Pundamilia_nyererei
ENSXCOG00000004478	snrnp48	71	48.936	ENSRNOG00000013756	Snrnp48	69	48.936	Rattus_norvegicus
ENSXCOG00000004478	snrnp48	69	51.489	ENSRBIG00000043856	SNRNP48	79	45.614	Rhinopithecus_bieti
ENSXCOG00000004478	snrnp48	69	51.489	ENSRROG00000043229	SNRNP48	67	51.739	Rhinopithecus_roxellana
ENSXCOG00000004478	snrnp48	69	51.915	ENSSBOG00000019486	SNRNP48	67	52.174	Saimiri_boliviensis_boliviensis
ENSXCOG00000004478	snrnp48	71	49.580	ENSSHAG00000014483	SNRNP48	68	49.580	Sarcophilus_harrisii
ENSXCOG00000004478	snrnp48	72	61.345	ENSSFOG00015006610	snrnp48	56	61.345	Scleropages_formosus
ENSXCOG00000004478	snrnp48	95	68.615	ENSSDUG00000014953	snrnp48	95	65.231	Seriola_dumerili
ENSXCOG00000004478	snrnp48	95	68.308	ENSSLDG00000005989	snrnp48	95	64.907	Seriola_lalandi_dorsalis
ENSXCOG00000004478	snrnp48	81	44.528	ENSSPUG00000006257	SNRNP48	52	55.676	Sphenodon_punctatus
ENSXCOG00000004478	snrnp48	95	65.538	ENSSPAG00000006454	snrnp48	70	78.903	Stegastes_partitus
ENSXCOG00000004478	snrnp48	59	55.897	ENSTGUG00000007575	SNRNP48	62	56.410	Taeniopygia_guttata
ENSXCOG00000004478	snrnp48	73	71.130	ENSTRUG00000007031	snrnp48	71	71.130	Takifugu_rubripes
ENSXCOG00000004478	snrnp48	98	63.975	ENSTNIG00000012977	-	72	70.711	Tetraodon_nigroviridis
ENSXCOG00000004478	snrnp48	71	48.511	ENSTBEG00000015620	SNRNP48	69	48.511	Tupaia_belangeri
ENSXCOG00000004478	snrnp48	67	48.889	ENSTTRG00000016715	SNRNP48	66	48.899	Tursiops_truncatus
ENSXCOG00000004478	snrnp48	68	49.558	ENSUAMG00000003690	SNRNP48	66	49.558	Ursus_americanus
ENSXCOG00000004478	snrnp48	58	51.832	ENSVPAG00000003557	SNRNP48	64	52.688	Vicugna_pacos
ENSXCOG00000004478	snrnp48	68	49.339	ENSVVUG00000004996	SNRNP48	66	49.339	Vulpes_vulpes
ENSXCOG00000004478	snrnp48	68	50.673	ENSXETG00000020447	snrnp48	95	42.679	Xenopus_tropicalis
ENSXCOG00000004478	snrnp48	95	90.491	ENSXMAG00000013595	snrnp48	95	90.491	Xiphophorus_maculatus