EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXCOG00000004516 (Gene tree)
Gene ID
-
Gene Symbol
si:ch1073-335m2.2
Alias
-
Full Name
si:ch1073-335m2.2
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Plus strand
Length
19828 bases
Position
chrKQ557213.1:13176030-13195857
Accession
ZDB-GENE-081104-82
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000005824RRM_1PF00076.223.4e-2411
ENSXCOP00000005818RRM_1PF00076.223.8e-2411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000005890-8964-ENSXCOP000000058242987 (aa)--
ENSXCOT00000005884-9213-ENSXCOP000000058183070 (aa)--
Gene Model
Click here to download ENSXCOG00000004516's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004516's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000004516si:ch1073-335m2.27783.432ENSG00000065526SPEN7283.432Homo_sapiens
ENSXCOG00000004516si:ch1073-335m2.210070.395ENSAPOG00000011411si:ch1073-335m2.210070.628Acanthochromis_polyacanthus
ENSXCOG00000004516si:ch1073-335m2.29978.919ENSAPOG00000009853-9376.684Acanthochromis_polyacanthus
ENSXCOG00000004516si:ch1073-335m2.27584.024ENSAMEG00000011817SPEN6684.024Ailuropoda_melanoleuca
ENSXCOG00000004516si:ch1073-335m2.29978.919ENSAOCG00000014505-9276.684Amphiprion_ocellaris
ENSXCOG00000004516si:ch1073-335m2.29069.907ENSAOCG00000008077si:ch1073-335m2.29970.065Amphiprion_ocellaris
ENSXCOG00000004516si:ch1073-335m2.29978.919ENSAPEG00000010288-9376.684Amphiprion_percula
ENSXCOG00000004516si:ch1073-335m2.210071.176ENSAPEG00000013515si:ch1073-335m2.210071.318Amphiprion_percula
ENSXCOG00000004516si:ch1073-335m2.29977.720ENSATEG00000005627-9877.720Anabas_testudineus
ENSXCOG00000004516si:ch1073-335m2.210067.946ENSATEG00000007674si:ch1073-335m2.210067.793Anabas_testudineus
ENSXCOG00000004516si:ch1073-335m2.29875.000ENSAPLG00000012618SPEN9575.000Anas_platyrhynchos
ENSXCOG00000004516si:ch1073-335m2.26984.615ENSACAG00000013761SPEN6884.615Anolis_carolinensis
ENSXCOG00000004516si:ch1073-335m2.27583.432ENSANAG00000034428SPEN6883.432Aotus_nancymaae
ENSXCOG00000004516si:ch1073-335m2.29975.000ENSACLG00000016922-9775.000Astatotilapia_calliptera
ENSXCOG00000004516si:ch1073-335m2.210067.282ENSACLG00000021433si:ch1073-335m2.210067.097Astatotilapia_calliptera
ENSXCOG00000004516si:ch1073-335m2.29976.562ENSAMXG00000012485spen9276.562Astyanax_mexicanus
ENSXCOG00000004516si:ch1073-335m2.28060.137ENSBTAG00000018729SPEN7160.137Bos_taurus
ENSXCOG00000004516si:ch1073-335m2.27784.024ENSCJAG00000008527SPEN6084.024Callithrix_jacchus
ENSXCOG00000004516si:ch1073-335m2.26750.541ENSCAFG00000016132-7051.327Canis_familiaris
ENSXCOG00000004516si:ch1073-335m2.28660.137ENSCHIG00000025070SPEN7160.137Capra_hircus
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSTSYG00000036016SPEN5384.024Carlito_syrichta
ENSXCOG00000004516si:ch1073-335m2.27982.456ENSCAPG00000013803SPEN7482.456Cavia_aperea
ENSXCOG00000004516si:ch1073-335m2.27782.456ENSCPOG00000014036SPEN7482.456Cavia_porcellus
ENSXCOG00000004516si:ch1073-335m2.27784.024ENSCCAG00000020258SPEN6884.024Cebus_capucinus
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSCATG00000015079SPEN6784.024Cercocebus_atys
ENSXCOG00000004516si:ch1073-335m2.28458.451ENSCLAG00000002018SPEN9058.451Chinchilla_lanigera
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSCSAG00000000841SPEN6584.024Chlorocebus_sabaeus
ENSXCOG00000004516si:ch1073-335m2.27984.615ENSCPBG00000010477SPEN8184.615Chrysemys_picta_bellii
ENSXCOG00000004516si:ch1073-335m2.27284.024ENSCANG00000034547SPEN6484.024Colobus_angolensis_palliatus
ENSXCOG00000004516si:ch1073-335m2.27877.660ENSCGRG00001007725Spen7277.660Cricetulus_griseus_chok1gshd
ENSXCOG00000004516si:ch1073-335m2.26677.660ENSCGRG00000010581Spen6977.660Cricetulus_griseus_crigri
ENSXCOG00000004516si:ch1073-335m2.29964.400ENSCSEG00000003915-9964.400Cynoglossus_semilaevis
ENSXCOG00000004516si:ch1073-335m2.29981.871ENSCVAG00000016346-9775.648Cyprinodon_variegatus
ENSXCOG00000004516si:ch1073-335m2.210078.304ENSCVAG00000009075si:ch1073-335m2.210078.491Cyprinodon_variegatus
ENSXCOG00000004516si:ch1073-335m2.29973.077ENSDARG00000074245spen9273.077Danio_rerio
ENSXCOG00000004516si:ch1073-335m2.210050.985ENSDARG00000074332si:ch1073-335m2.210051.084Danio_rerio
ENSXCOG00000004516si:ch1073-335m2.28659.712ENSDNOG00000041948SPEN7159.928Dasypus_novemcinctus
ENSXCOG00000004516si:ch1073-335m2.28184.024ENSDORG00000023909Spen6684.024Dipodomys_ordii
ENSXCOG00000004516si:ch1073-335m2.27958.885ENSEASG00005015911SPEN6958.885Equus_asinus_asinus
ENSXCOG00000004516si:ch1073-335m2.27584.615ENSECAG00000008833SPEN6958.885Equus_caballus
ENSXCOG00000004516si:ch1073-335m2.25983.721ENSEEUG00000010255SPEN5883.721Erinaceus_europaeus
ENSXCOG00000004516si:ch1073-335m2.210058.000ENSELUG00000007726si:ch1073-335m2.210057.870Esox_lucius
ENSXCOG00000004516si:ch1073-335m2.27573.762ENSFALG00000003551SPEN7673.762Ficedula_albicollis
ENSXCOG00000004516si:ch1073-335m2.27382.456ENSFDAG00000010212SPEN6682.456Fukomys_damarensis
ENSXCOG00000004516si:ch1073-335m2.210077.886ENSFHEG00000004544si:ch1073-335m2.210078.036Fundulus_heteroclitus
ENSXCOG00000004516si:ch1073-335m2.210059.859ENSGMOG00000008156si:ch1073-335m2.210059.735Gadus_morhua
ENSXCOG00000004516si:ch1073-335m2.29374.510ENSGALG00000036932SPEN8874.510Gallus_gallus
ENSXCOG00000004516si:ch1073-335m2.29981.871ENSGAFG00000015819-9774.872Gambusia_affinis
ENSXCOG00000004516si:ch1073-335m2.210092.137ENSGAFG00000021570si:ch1073-335m2.210092.264Gambusia_affinis
ENSXCOG00000004516si:ch1073-335m2.29878.919ENSGACG00000005341-9578.191Gasterosteus_aculeatus
ENSXCOG00000004516si:ch1073-335m2.210065.095ENSGACG00000001176si:ch1073-335m2.210065.106Gasterosteus_aculeatus
ENSXCOG00000004516si:ch1073-335m2.29184.615ENSGAGG00000020785SPEN8584.615Gopherus_agassizii
ENSXCOG00000004516si:ch1073-335m2.27783.432ENSGGOG00000012041SPEN7283.432Gorilla_gorilla
ENSXCOG00000004516si:ch1073-335m2.29869.694ENSHBUG00000023253si:ch1073-335m2.210069.850Haplochromis_burtoni
ENSXCOG00000004516si:ch1073-335m2.29975.500ENSHBUG00000020626-9775.500Haplochromis_burtoni
ENSXCOG00000004516si:ch1073-335m2.26959.155ENSHGLG00000019259SPEN6559.155Heterocephalus_glaber_female
ENSXCOG00000004516si:ch1073-335m2.26359.155ENSHGLG00100019294SPEN6359.155Heterocephalus_glaber_male
ENSXCOG00000004516si:ch1073-335m2.29663.950ENSHCOG00000006004si:ch1073-335m2.29963.677Hippocampus_comes
ENSXCOG00000004516si:ch1073-335m2.29753.042ENSIPUG00000018212si:ch1073-335m2.29953.238Ictalurus_punctatus
ENSXCOG00000004516si:ch1073-335m2.210074.227ENSIPUG00000021668spen9374.227Ictalurus_punctatus
ENSXCOG00000004516si:ch1073-335m2.28460.727ENSSTOG00000021428SPEN7560.727Ictidomys_tridecemlineatus
ENSXCOG00000004516si:ch1073-335m2.29365.306ENSJJAG00000010882Spen9465.306Jaculus_jaculus
ENSXCOG00000004516si:ch1073-335m2.210074.129ENSKMAG00000003882-9874.129Kryptolebias_marmoratus
ENSXCOG00000004516si:ch1073-335m2.210071.349ENSKMAG00000021725si:ch1073-335m2.210071.116Kryptolebias_marmoratus
ENSXCOG00000004516si:ch1073-335m2.29970.093ENSLBEG00000020855si:ch1073-335m2.210067.392Labrus_bergylta
ENSXCOG00000004516si:ch1073-335m2.28376.923ENSLBEG00000019129-9374.359Labrus_bergylta
ENSXCOG00000004516si:ch1073-335m2.29484.024ENSLACG00000003258SPEN8984.024Latimeria_chalumnae
ENSXCOG00000004516si:ch1073-335m2.210073.171ENSLOCG00000007896si:ch1073-335m2.28973.171Lepisosteus_oculatus
ENSXCOG00000004516si:ch1073-335m2.27483.626ENSLAFG00000004524SPEN6483.626Loxodonta_africana
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSMFAG00000041974SPEN7184.024Macaca_fascicularis
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSMMUG00000008026SPEN6784.024Macaca_mulatta
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSMNEG00000042402SPEN6784.024Macaca_nemestrina
ENSXCOG00000004516si:ch1073-335m2.27284.024ENSMLEG00000039293SPEN6584.024Mandrillus_leucophaeus
ENSXCOG00000004516si:ch1073-335m2.210068.243ENSMAMG00000023870si:ch1073-335m2.210068.345Mastacembelus_armatus
ENSXCOG00000004516si:ch1073-335m2.210067.261ENSMZEG00005011762si:ch1073-335m2.210067.138Maylandia_zebra
ENSXCOG00000004516si:ch1073-335m2.29075.000ENSMZEG00005021491-9675.000Maylandia_zebra
ENSXCOG00000004516si:ch1073-335m2.28384.024ENSMAUG00000008318Spen8684.024Mesocricetus_auratus
ENSXCOG00000004516si:ch1073-335m2.28384.024ENSMICG00000030994SPEN7584.024Microcebus_murinus
ENSXCOG00000004516si:ch1073-335m2.28584.024ENSMOCG00000016083Spen8184.024Microtus_ochrogaster
ENSXCOG00000004516si:ch1073-335m2.210067.219ENSMMOG00000021742si:ch1073-335m2.210066.912Mola_mola
ENSXCOG00000004516si:ch1073-335m2.29074.595ENSMODG00000003411SPEN8474.595Monodelphis_domestica
ENSXCOG00000004516si:ch1073-335m2.29978.378ENSMALG00000008625-9876.684Monopterus_albus
ENSXCOG00000004516si:ch1073-335m2.28060.662MGP_CAROLIEiJ_G0026745Spen7384.024Mus_caroli
ENSXCOG00000004516si:ch1073-335m2.27961.029ENSMUSG00000040761Spen7261.029Mus_musculus
ENSXCOG00000004516si:ch1073-335m2.27784.024MGP_PahariEiJ_G0029076Spen8884.024Mus_pahari
ENSXCOG00000004516si:ch1073-335m2.27961.029MGP_SPRETEiJ_G0027724Spen7261.029Mus_spretus
ENSXCOG00000004516si:ch1073-335m2.27384.024ENSMPUG00000016317SPEN5484.024Mustela_putorius_furo
ENSXCOG00000004516si:ch1073-335m2.27482.292ENSMLUG00000010144SPEN7864.218Myotis_lucifugus
ENSXCOG00000004516si:ch1073-335m2.28879.888ENSNGAG00000000641Spen9379.888Nannospalax_galili
ENSXCOG00000004516si:ch1073-335m2.210067.090ENSNBRG00000005733si:ch1073-335m2.210066.904Neolamprologus_brichardi
ENSXCOG00000004516si:ch1073-335m2.28576.000ENSNBRG00000022090-9776.000Neolamprologus_brichardi
ENSXCOG00000004516si:ch1073-335m2.27283.432ENSNLEG00000007652SPEN6583.432Nomascus_leucogenys
ENSXCOG00000004516si:ch1073-335m2.27578.947ENSMEUG00000002422SPEN6878.947Notamacropus_eugenii
ENSXCOG00000004516si:ch1073-335m2.27984.024ENSOPRG00000015800SPEN6684.024Ochotona_princeps
ENSXCOG00000004516si:ch1073-335m2.29758.633ENSODEG00000016644SPEN9158.633Octodon_degus
ENSXCOG00000004516si:ch1073-335m2.210075.500ENSONIG00000006573-9875.500Oreochromis_niloticus
ENSXCOG00000004516si:ch1073-335m2.26184.024ENSOCUG00000010840SPEN5684.024Oryctolagus_cuniculus
ENSXCOG00000004516si:ch1073-335m2.28739.709ENSORLG00000028894-10037.209Oryzias_latipes
ENSXCOG00000004516si:ch1073-335m2.210066.935ENSORLG00000018414si:ch1073-335m2.210066.852Oryzias_latipes
ENSXCOG00000004516si:ch1073-335m2.210066.759ENSORLG00020009351si:ch1073-335m2.210066.656Oryzias_latipes_hni
ENSXCOG00000004516si:ch1073-335m2.28739.988ENSORLG00020007735-10037.445Oryzias_latipes_hni
ENSXCOG00000004516si:ch1073-335m2.29575.385ENSORLG00015022085-9075.385Oryzias_latipes_hsok
ENSXCOG00000004516si:ch1073-335m2.210066.718ENSORLG00015005537si:ch1073-335m2.210066.646Oryzias_latipes_hsok
ENSXCOG00000004516si:ch1073-335m2.29853.170ENSOMEG00000007639-9254.404Oryzias_melastigma
ENSXCOG00000004516si:ch1073-335m2.210067.843ENSOMEG00000004509si:ch1073-335m2.210068.028Oryzias_melastigma
ENSXCOG00000004516si:ch1073-335m2.28284.024ENSOGAG00000025110SPEN7384.024Otolemur_garnettii
ENSXCOG00000004516si:ch1073-335m2.28660.000ENSOARG00000008477SPEN6960.000Ovis_aries
ENSXCOG00000004516si:ch1073-335m2.27283.432ENSPPAG00000035690SPEN6583.432Pan_paniscus
ENSXCOG00000004516si:ch1073-335m2.27483.432ENSPTRG00000000210SPEN6783.432Pan_troglodytes
ENSXCOG00000004516si:ch1073-335m2.27484.024ENSPANG00000006293SPEN6784.024Papio_anubis
ENSXCOG00000004516si:ch1073-335m2.29792.857ENSPKIG00000010492si:ch1073-335m2.28983.721Paramormyrops_kingsleyae
ENSXCOG00000004516si:ch1073-335m2.210076.804ENSPKIG00000002617SPEN9151.515Paramormyrops_kingsleyae
ENSXCOG00000004516si:ch1073-335m2.25584.615ENSPSIG00000008026SPEN8384.615Pelodiscus_sinensis
ENSXCOG00000004516si:ch1073-335m2.28384.024ENSPEMG00000022997Spen7184.024Peromyscus_maniculatus_bairdii
ENSXCOG00000004516si:ch1073-335m2.210091.027ENSPFOG00000017986si:ch1073-335m2.210091.216Poecilia_formosa
ENSXCOG00000004516si:ch1073-335m2.210092.001ENSPLAG00000016625si:ch1073-335m2.210092.097Poecilia_latipinna
ENSXCOG00000004516si:ch1073-335m2.29975.897ENSPMEG00000006764-9775.897Poecilia_mexicana
ENSXCOG00000004516si:ch1073-335m2.210090.900ENSPMEG00000002674si:ch1073-335m2.29992.841Poecilia_mexicana
ENSXCOG00000004516si:ch1073-335m2.210092.393ENSPREG00000005357si:ch1073-335m2.210092.425Poecilia_reticulata
ENSXCOG00000004516si:ch1073-335m2.29975.385ENSPREG00000010399-9775.385Poecilia_reticulata
ENSXCOG00000004516si:ch1073-335m2.27483.432ENSPPYG00000001834SPEN6783.432Pongo_abelii
ENSXCOG00000004516si:ch1073-335m2.26783.432ENSPCAG00000009543SPEN6183.432Procavia_capensis
ENSXCOG00000004516si:ch1073-335m2.28380.588ENSPCOG00000021735SPEN7480.588Propithecus_coquereli
ENSXCOG00000004516si:ch1073-335m2.25473.232ENSPVAG00000013794SPEN5373.232Pteropus_vampyrus
ENSXCOG00000004516si:ch1073-335m2.29975.500ENSPNYG00000012379-9775.500Pundamilia_nyererei
ENSXCOG00000004516si:ch1073-335m2.210067.251ENSPNYG00000009042si:ch1073-335m2.210067.066Pundamilia_nyererei
ENSXCOG00000004516si:ch1073-335m2.29955.826ENSPNAG00000011452si:ch1073-335m2.210052.945Pygocentrus_nattereri
ENSXCOG00000004516si:ch1073-335m2.29972.500ENSPNAG00000020795spen9672.500Pygocentrus_nattereri
ENSXCOG00000004516si:ch1073-335m2.28581.356ENSRNOG00000033556Spen7181.356Rattus_norvegicus
ENSXCOG00000004516si:ch1073-335m2.27284.024ENSRBIG00000039654SPEN6684.024Rhinopithecus_bieti
ENSXCOG00000004516si:ch1073-335m2.27284.024ENSRROG00000035686SPEN6684.024Rhinopithecus_roxellana
ENSXCOG00000004516si:ch1073-335m2.27584.024ENSSBOG00000028770SPEN6984.024Saimiri_boliviensis_boliviensis
ENSXCOG00000004516si:ch1073-335m2.28979.882ENSSHAG00000004960SPEN8379.882Sarcophilus_harrisii
ENSXCOG00000004516si:ch1073-335m2.29986.391ENSSFOG00015010267si:ch1073-335m2.29886.391Scleropages_formosus
ENSXCOG00000004516si:ch1073-335m2.28873.333ENSSFOG00015007131si:ch1073-335m2.29273.333Scleropages_formosus
ENSXCOG00000004516si:ch1073-335m2.210068.479ENSSMAG00000000125si:ch1073-335m2.210068.498Scophthalmus_maximus
ENSXCOG00000004516si:ch1073-335m2.29977.202ENSSMAG00000008996-9877.202Scophthalmus_maximus
ENSXCOG00000004516si:ch1073-335m2.210071.184ENSSDUG00000008416si:ch1073-335m2.210071.245Seriola_dumerili
ENSXCOG00000004516si:ch1073-335m2.29980.000ENSSDUG00000003476-9877.720Seriola_dumerili
ENSXCOG00000004516si:ch1073-335m2.29980.000ENSSLDG00000012950-9876.884Seriola_lalandi_dorsalis
ENSXCOG00000004516si:ch1073-335m2.210070.097ENSSLDG00000023347si:ch1073-335m2.210070.286Seriola_lalandi_dorsalis
ENSXCOG00000004516si:ch1073-335m2.26878.919ENSSPUG00000001866-8578.919Sphenodon_punctatus
ENSXCOG00000004516si:ch1073-335m2.210071.195ENSSPAG00000012454si:ch1073-335m2.210071.226Stegastes_partitus
ENSXCOG00000004516si:ch1073-335m2.29975.127ENSSPAG00000006014-9876.166Stegastes_partitus
ENSXCOG00000004516si:ch1073-335m2.26650.737ENSSSCG00000034484SPEN6951.524Sus_scrofa
ENSXCOG00000004516si:ch1073-335m2.210072.059ENSTRUG00000024350-9872.059Takifugu_rubripes
ENSXCOG00000004516si:ch1073-335m2.28862.227ENSTRUG00000021008si:ch1073-335m2.210061.963Takifugu_rubripes
ENSXCOG00000004516si:ch1073-335m2.210063.528ENSTNIG00000014666si:ch1073-335m2.210063.333Tetraodon_nigroviridis
ENSXCOG00000004516si:ch1073-335m2.29979.121ENSTNIG00000010907-9771.292Tetraodon_nigroviridis
ENSXCOG00000004516si:ch1073-335m2.26284.024ENSTBEG00000003628SPEN5284.024Tupaia_belangeri
ENSXCOG00000004516si:ch1073-335m2.27584.615ENSUAMG00000009600SPEN6684.615Ursus_americanus
ENSXCOG00000004516si:ch1073-335m2.27384.615ENSUMAG00000021641SPEN6384.615Ursus_maritimus
ENSXCOG00000004516si:ch1073-335m2.26792.857ENSVVUG00000028951SPEN6692.857Vulpes_vulpes
ENSXCOG00000004516si:ch1073-335m2.27377.249ENSXETG00000023114SPEN8977.249Xenopus_tropicalis
ENSXCOG00000004516si:ch1073-335m2.29981.287ENSXMAG00000021384-9774.359Xiphophorus_maculatus
ENSXCOG00000004516si:ch1073-335m2.210095.958ENSXMAG00000029887si:ch1073-335m2.210095.958Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us