EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000004658 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 8077 bases
Position: chrKQ557211.1:23771149-23779225
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006002	SRP54	PF00448.22	6.3e-77	1	1
ENSXCOP00000006002	SRP54_N	PF02881.19	3.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006070	-	1383	-	ENSXCOP00000006002	460 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000004658's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004658's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000004658	srp54	96	95.937	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSXCOG00000004658	srp54	96	99.774	ENSAPOG00000011314	srp54	88	99.774	Acanthochromis_polyacanthus
ENSXCOG00000004658	srp54	96	95.937	ENSAMEG00000015544	SRP54	88	95.937	Ailuropoda_melanoleuca
ENSXCOG00000004658	srp54	97	98.652	ENSACIG00000022831	srp54	96	98.652	Amphilophus_citrinellus
ENSXCOG00000004658	srp54	96	99.774	ENSAOCG00000019401	srp54	88	99.774	Amphiprion_ocellaris
ENSXCOG00000004658	srp54	96	99.774	ENSAPEG00000001977	srp54	88	99.774	Amphiprion_percula
ENSXCOG00000004658	srp54	96	99.549	ENSATEG00000013877	srp54	88	99.549	Anabas_testudineus
ENSXCOG00000004658	srp54	96	95.260	ENSAPLG00000010125	SRP54	89	95.260	Anas_platyrhynchos
ENSXCOG00000004658	srp54	58	78.652	ENSACAG00000001124	-	80	78.652	Anolis_carolinensis
ENSXCOG00000004658	srp54	96	94.808	ENSACAG00000002103	-	88	94.808	Anolis_carolinensis
ENSXCOG00000004658	srp54	81	91.153	ENSACAG00000010631	-	86	91.153	Anolis_carolinensis
ENSXCOG00000004658	srp54	96	95.937	ENSANAG00000022133	SRP54	88	95.937	Aotus_nancymaae
ENSXCOG00000004658	srp54	96	99.323	ENSACLG00000015866	srp54	88	99.323	Astatotilapia_calliptera
ENSXCOG00000004658	srp54	96	97.517	ENSAMXG00000032669	SRP54	88	97.517	Astyanax_mexicanus
ENSXCOG00000004658	srp54	96	95.937	ENSBTAG00000019085	SRP54	88	95.937	Bos_taurus
ENSXCOG00000004658	srp54	96	74.266	WBGene00009012	F21D5.7	89	74.266	Caenorhabditis_elegans
ENSXCOG00000004658	srp54	96	95.937	ENSCJAG00000006581	SRP54	88	95.937	Callithrix_jacchus
ENSXCOG00000004658	srp54	96	95.937	ENSCAFG00000013331	SRP54	88	95.937	Canis_familiaris
ENSXCOG00000004658	srp54	96	95.937	ENSCAFG00020023427	SRP54	88	95.937	Canis_lupus_dingo
ENSXCOG00000004658	srp54	96	95.937	ENSCHIG00000026345	SRP54	88	95.937	Capra_hircus
ENSXCOG00000004658	srp54	96	84.876	ENSTSYG00000035333	-	87	84.876	Carlito_syrichta
ENSXCOG00000004658	srp54	96	95.711	ENSTSYG00000002680	-	88	95.711	Carlito_syrichta
ENSXCOG00000004658	srp54	84	66.584	ENSCAPG00000008780	SRP54	84	66.584	Cavia_aperea
ENSXCOG00000004658	srp54	96	95.485	ENSCPOG00000003691	SRP54	88	95.485	Cavia_porcellus
ENSXCOG00000004658	srp54	85	95.265	ENSCCAG00000024179	SRP54	86	95.265	Cebus_capucinus
ENSXCOG00000004658	srp54	96	95.937	ENSCATG00000034083	SRP54	88	95.937	Cercocebus_atys
ENSXCOG00000004658	srp54	96	95.937	ENSCLAG00000015076	SRP54	88	95.937	Chinchilla_lanigera
ENSXCOG00000004658	srp54	96	95.937	ENSCSAG00000015575	SRP54	88	95.937	Chlorocebus_sabaeus
ENSXCOG00000004658	srp54	96	84.199	ENSCHOG00000008986	SRP54	92	84.199	Choloepus_hoffmanni
ENSXCOG00000004658	srp54	96	95.485	ENSCPBG00000026195	SRP54	88	95.485	Chrysemys_picta_bellii
ENSXCOG00000004658	srp54	96	84.842	ENSCING00000007380	-	88	84.842	Ciona_intestinalis
ENSXCOG00000004658	srp54	96	95.937	ENSCANG00000028532	SRP54	88	95.937	Colobus_angolensis_palliatus
ENSXCOG00000004658	srp54	96	95.937	ENSCGRG00001009525	-	88	95.937	Cricetulus_griseus_chok1gshd
ENSXCOG00000004658	srp54	84	96.364	ENSCGRG00000009453	-	89	96.364	Cricetulus_griseus_crigri
ENSXCOG00000004658	srp54	96	98.871	ENSCSEG00000012392	srp54	88	98.871	Cynoglossus_semilaevis
ENSXCOG00000004658	srp54	96	99.774	ENSCVAG00000010395	srp54	88	99.774	Cyprinodon_variegatus
ENSXCOG00000004658	srp54	96	98.420	ENSDARG00000098367	srp54	88	98.420	Danio_rerio
ENSXCOG00000004658	srp54	96	95.937	ENSDNOG00000032525	SRP54	88	95.937	Dasypus_novemcinctus
ENSXCOG00000004658	srp54	96	81.757	ENSDORG00000005159	-	96	81.757	Dipodomys_ordii
ENSXCOG00000004658	srp54	96	79.864	FBgn0010747	Srp54k	87	79.864	Drosophila_melanogaster
ENSXCOG00000004658	srp54	78	53.911	ENSETEG00000012102	-	84	53.911	Echinops_telfairi
ENSXCOG00000004658	srp54	96	94.582	ENSETEG00000016307	-	88	94.582	Echinops_telfairi
ENSXCOG00000004658	srp54	96	90.971	ENSEBUG00000009437	-	88	90.971	Eptatretus_burgeri
ENSXCOG00000004658	srp54	96	95.937	ENSEASG00005002057	SRP54	88	95.937	Equus_asinus_asinus
ENSXCOG00000004658	srp54	96	95.937	ENSECAG00000018042	SRP54	87	95.937	Equus_caballus
ENSXCOG00000004658	srp54	96	77.878	ENSEEUG00000001511	SRP54	88	77.878	Erinaceus_europaeus
ENSXCOG00000004658	srp54	96	97.968	ENSELUG00000003395	srp54	88	97.968	Esox_lucius
ENSXCOG00000004658	srp54	96	95.711	ENSFCAG00000032033	SRP54	88	95.711	Felis_catus
ENSXCOG00000004658	srp54	96	95.260	ENSFALG00000005995	SRP54	88	95.260	Ficedula_albicollis
ENSXCOG00000004658	srp54	96	95.937	ENSFDAG00000016767	SRP54	89	95.937	Fukomys_damarensis
ENSXCOG00000004658	srp54	96	99.549	ENSFHEG00000004263	srp54	99	92.026	Fundulus_heteroclitus
ENSXCOG00000004658	srp54	91	91.847	ENSGMOG00000011391	srp54	87	91.847	Gadus_morhua
ENSXCOG00000004658	srp54	96	95.260	ENSGALG00000023135	SRP54	88	95.260	Gallus_gallus
ENSXCOG00000004658	srp54	96	100.000	ENSGAFG00000011586	srp54	88	100.000	Gambusia_affinis
ENSXCOG00000004658	srp54	96	98.871	ENSGACG00000004181	srp54	100	98.848	Gasterosteus_aculeatus
ENSXCOG00000004658	srp54	96	95.485	ENSGAGG00000014766	SRP54	88	95.485	Gopherus_agassizii
ENSXCOG00000004658	srp54	96	95.937	ENSGGOG00000002926	SRP54	88	95.937	Gorilla_gorilla
ENSXCOG00000004658	srp54	96	99.323	ENSHBUG00000005678	srp54	88	99.323	Haplochromis_burtoni
ENSXCOG00000004658	srp54	96	95.937	ENSHGLG00000002850	SRP54	88	95.937	Heterocephalus_glaber_female
ENSXCOG00000004658	srp54	96	64.414	ENSHGLG00100007281	-	87	64.414	Heterocephalus_glaber_male
ENSXCOG00000004658	srp54	96	95.937	ENSHGLG00100005263	SRP54	88	95.937	Heterocephalus_glaber_male
ENSXCOG00000004658	srp54	96	97.517	ENSHCOG00000021127	srp54	88	97.517	Hippocampus_comes
ENSXCOG00000004658	srp54	96	97.517	ENSIPUG00000001420	srp54	88	97.517	Ictalurus_punctatus
ENSXCOG00000004658	srp54	96	95.937	ENSSTOG00000016023	SRP54	88	95.937	Ictidomys_tridecemlineatus
ENSXCOG00000004658	srp54	96	90.519	ENSJJAG00000013417	-	87	90.519	Jaculus_jaculus
ENSXCOG00000004658	srp54	82	71.240	ENSJJAG00000016404	-	83	71.240	Jaculus_jaculus
ENSXCOG00000004658	srp54	96	99.323	ENSKMAG00000007707	srp54	88	99.323	Kryptolebias_marmoratus
ENSXCOG00000004658	srp54	96	99.549	ENSLBEG00000021122	srp54	88	99.549	Labrus_bergylta
ENSXCOG00000004658	srp54	96	99.549	ENSLBEG00000018690	srp54	88	99.549	Labrus_bergylta
ENSXCOG00000004658	srp54	96	95.260	ENSLACG00000017890	SRP54	88	95.260	Latimeria_chalumnae
ENSXCOG00000004658	srp54	96	97.968	ENSLOCG00000009440	srp54	88	97.968	Lepisosteus_oculatus
ENSXCOG00000004658	srp54	96	95.937	ENSLAFG00000012007	SRP54	88	95.937	Loxodonta_africana
ENSXCOG00000004658	srp54	96	95.937	ENSMFAG00000044371	SRP54	88	95.937	Macaca_fascicularis
ENSXCOG00000004658	srp54	96	95.937	ENSMMUG00000015073	FAM177A1	88	95.937	Macaca_mulatta
ENSXCOG00000004658	srp54	96	95.937	ENSMNEG00000006947	SRP54	88	95.937	Macaca_nemestrina
ENSXCOG00000004658	srp54	96	95.937	ENSMLEG00000042251	SRP54	88	95.937	Mandrillus_leucophaeus
ENSXCOG00000004658	srp54	96	99.323	ENSMAMG00000004803	srp54	88	99.323	Mastacembelus_armatus
ENSXCOG00000004658	srp54	96	99.323	ENSMZEG00005027528	srp54	88	99.323	Maylandia_zebra
ENSXCOG00000004658	srp54	96	90.112	ENSMGAG00000012481	SRP54	88	90.112	Meleagris_gallopavo
ENSXCOG00000004658	srp54	96	96.163	ENSMAUG00000014447	-	88	96.163	Mesocricetus_auratus
ENSXCOG00000004658	srp54	96	95.937	ENSMICG00000010270	SRP54	88	95.937	Microcebus_murinus
ENSXCOG00000004658	srp54	82	95.778	ENSMOCG00000000948	-	86	95.778	Microtus_ochrogaster
ENSXCOG00000004658	srp54	96	98.420	ENSMMOG00000020303	srp54	97	98.420	Mola_mola
ENSXCOG00000004658	srp54	96	95.937	ENSMODG00000023150	-	88	95.937	Monodelphis_domestica
ENSXCOG00000004658	srp54	96	95.937	ENSMODG00000012925	-	88	95.937	Monodelphis_domestica
ENSXCOG00000004658	srp54	97	97.991	ENSMALG00000009163	srp54	99	97.991	Monopterus_albus
ENSXCOG00000004658	srp54	96	96.163	MGP_CAROLIEiJ_G0017754	-	88	96.163	Mus_caroli
ENSXCOG00000004658	srp54	96	96.163	ENSMUSG00000112449	Srp54b	92	92.857	Mus_musculus
ENSXCOG00000004658	srp54	96	96.163	ENSMUSG00000073079	Srp54a	100	97.273	Mus_musculus
ENSXCOG00000004658	srp54	96	95.260	ENSMUSG00000079108	Srp54c	88	95.260	Mus_musculus
ENSXCOG00000004658	srp54	96	96.163	MGP_PahariEiJ_G0029510	-	88	96.163	Mus_pahari
ENSXCOG00000004658	srp54	96	95.937	ENSMPUG00000016302	SRP54	88	95.937	Mustela_putorius_furo
ENSXCOG00000004658	srp54	96	95.260	ENSMLUG00000008958	SRP54	88	95.260	Myotis_lucifugus
ENSXCOG00000004658	srp54	96	85.553	ENSNGAG00000019806	-	87	85.553	Nannospalax_galili
ENSXCOG00000004658	srp54	82	99.208	ENSNBRG00000006000	srp54	86	99.208	Neolamprologus_brichardi
ENSXCOG00000004658	srp54	96	95.937	ENSNLEG00000003496	SRP54	88	95.937	Nomascus_leucogenys
ENSXCOG00000004658	srp54	73	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSXCOG00000004658	srp54	96	95.937	ENSODEG00000004865	SRP54	88	95.937	Octodon_degus
ENSXCOG00000004658	srp54	96	99.323	ENSONIG00000011768	srp54	88	99.323	Oreochromis_niloticus
ENSXCOG00000004658	srp54	96	95.937	ENSOANG00000014051	SRP54	88	95.937	Ornithorhynchus_anatinus
ENSXCOG00000004658	srp54	96	95.937	ENSOCUG00000007838	SRP54	88	95.937	Oryctolagus_cuniculus
ENSXCOG00000004658	srp54	96	99.097	ENSORLG00000010027	srp54	88	99.097	Oryzias_latipes
ENSXCOG00000004658	srp54	96	99.097	ENSORLG00020001878	srp54	88	99.097	Oryzias_latipes_hni
ENSXCOG00000004658	srp54	96	99.097	ENSORLG00015021866	srp54	88	99.097	Oryzias_latipes_hsok
ENSXCOG00000004658	srp54	96	98.871	ENSOMEG00000020952	srp54	88	98.871	Oryzias_melastigma
ENSXCOG00000004658	srp54	96	95.937	ENSOGAG00000012188	SRP54	88	95.937	Otolemur_garnettii
ENSXCOG00000004658	srp54	96	95.937	ENSOARG00000007160	SRP54	88	95.937	Ovis_aries
ENSXCOG00000004658	srp54	96	95.937	ENSPPAG00000017434	SRP54	88	95.937	Pan_paniscus
ENSXCOG00000004658	srp54	96	94.808	ENSPPRG00000014047	SRP54	88	94.808	Panthera_pardus
ENSXCOG00000004658	srp54	96	95.711	ENSPTIG00000000744	SRP54	84	95.711	Panthera_tigris_altaica
ENSXCOG00000004658	srp54	96	95.937	ENSPTRG00000006259	FAM177A1	88	95.937	Pan_troglodytes
ENSXCOG00000004658	srp54	96	95.937	ENSPANG00000023853	SRP54	88	95.937	Papio_anubis
ENSXCOG00000004658	srp54	96	97.968	ENSPKIG00000001953	srp54	88	97.968	Paramormyrops_kingsleyae
ENSXCOG00000004658	srp54	96	95.485	ENSPSIG00000006476	SRP54	88	95.485	Pelodiscus_sinensis
ENSXCOG00000004658	srp54	97	99.550	ENSPMGG00000004127	srp54	96	99.550	Periophthalmus_magnuspinnatus
ENSXCOG00000004658	srp54	97	83.408	ENSPEMG00000019634	-	93	80.813	Peromyscus_maniculatus_bairdii
ENSXCOG00000004658	srp54	96	93.228	ENSPMAG00000006078	-	88	93.228	Petromyzon_marinus
ENSXCOG00000004658	srp54	96	95.937	ENSPCIG00000016175	SRP54	88	95.937	Phascolarctos_cinereus
ENSXCOG00000004658	srp54	96	100.000	ENSPFOG00000008870	srp54	88	100.000	Poecilia_formosa
ENSXCOG00000004658	srp54	96	100.000	ENSPLAG00000009889	srp54	88	100.000	Poecilia_latipinna
ENSXCOG00000004658	srp54	96	100.000	ENSPMEG00000008601	srp54	88	100.000	Poecilia_mexicana
ENSXCOG00000004658	srp54	96	100.000	ENSPREG00000004505	srp54	88	100.000	Poecilia_reticulata
ENSXCOG00000004658	srp54	96	90.293	ENSPPYG00000005739	SRP54	88	90.293	Pongo_abelii
ENSXCOG00000004658	srp54	96	91.874	ENSPCAG00000006268	SRP54	88	91.874	Procavia_capensis
ENSXCOG00000004658	srp54	96	93.694	ENSPCOG00000022473	SRP54	88	93.694	Propithecus_coquereli
ENSXCOG00000004658	srp54	69	97.872	ENSPVAG00000010056	SRP54	82	97.872	Pteropus_vampyrus
ENSXCOG00000004658	srp54	96	99.323	ENSPNYG00000009717	srp54	88	99.323	Pundamilia_nyererei
ENSXCOG00000004658	srp54	96	97.743	ENSPNAG00000008544	srp54	88	97.743	Pygocentrus_nattereri
ENSXCOG00000004658	srp54	96	95.937	ENSRNOG00000032776	Srp54a	88	95.937	Rattus_norvegicus
ENSXCOG00000004658	srp54	96	95.937	ENSRROG00000041292	SRP54	88	95.937	Rhinopithecus_roxellana
ENSXCOG00000004658	srp54	94	51.701	YPR088C	SRP54	81	51.701	Saccharomyces_cerevisiae
ENSXCOG00000004658	srp54	92	94.774	ENSSBOG00000035145	SRP54	87	95.642	Saimiri_boliviensis_boliviensis
ENSXCOG00000004658	srp54	61	94.681	ENSSHAG00000000671	SRP54	82	94.681	Sarcophilus_harrisii
ENSXCOG00000004658	srp54	96	98.194	ENSSFOG00015013920	srp54	88	98.194	Scleropages_formosus
ENSXCOG00000004658	srp54	96	98.646	ENSSMAG00000002441	srp54	83	98.646	Scophthalmus_maximus
ENSXCOG00000004658	srp54	96	99.097	ENSSDUG00000018586	srp54	88	99.097	Seriola_dumerili
ENSXCOG00000004658	srp54	96	99.323	ENSSLDG00000010476	srp54	88	99.323	Seriola_lalandi_dorsalis
ENSXCOG00000004658	srp54	96	95.937	ENSSARG00000002744	SRP54	88	95.937	Sorex_araneus
ENSXCOG00000004658	srp54	96	95.485	ENSSPUG00000013101	SRP54	88	95.485	Sphenodon_punctatus
ENSXCOG00000004658	srp54	96	99.774	ENSSPAG00000002354	srp54	88	99.774	Stegastes_partitus
ENSXCOG00000004658	srp54	96	95.937	ENSSSCG00000001955	SRP54	88	95.937	Sus_scrofa
ENSXCOG00000004658	srp54	96	95.260	ENSTGUG00000011945	-	89	95.260	Taeniopygia_guttata
ENSXCOG00000004658	srp54	96	98.646	ENSTRUG00000007057	srp54	88	98.646	Takifugu_rubripes
ENSXCOG00000004658	srp54	96	97.968	ENSTNIG00000002589	srp54	88	97.968	Tetraodon_nigroviridis
ENSXCOG00000004658	srp54	84	85.751	ENSTBEG00000011409	SRP54	86	85.751	Tupaia_belangeri
ENSXCOG00000004658	srp54	96	85.553	ENSTTRG00000000928	SRP54	88	85.553	Tursiops_truncatus
ENSXCOG00000004658	srp54	57	96.947	ENSUAMG00000012385	SRP54	100	96.947	Ursus_americanus
ENSXCOG00000004658	srp54	96	95.937	ENSUMAG00000011234	SRP54	88	95.937	Ursus_maritimus
ENSXCOG00000004658	srp54	96	95.711	ENSVPAG00000005668	SRP54	93	95.711	Vicugna_pacos
ENSXCOG00000004658	srp54	96	95.937	ENSVVUG00000019962	SRP54	88	95.937	Vulpes_vulpes
ENSXCOG00000004658	srp54	96	78.396	ENSXETG00000012290	srp54	88	78.936	Xenopus_tropicalis
ENSXCOG00000004658	srp54	96	100.000	ENSXMAG00000018315	srp54	88	100.000	Xiphophorus_maculatus