EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000004676 (Gene tree)
Gene ID: -
Gene Symbol: rpusd4
Alias: si:ch211-14i3.3|zgc:92006
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 6341 bases
Position: chrKQ557213.1:13281679-13288019
Accession: ZDB-GENE-040801-238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006037	PseudoU_synth_2	PF00849.22	9e-26	1	1
ENSXCOP00000006039	PseudoU_synth_2	PF00849.22	2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006107	-	1170	-	ENSXCOP00000006039	389 (aa)	-	-
ENSXCOT00000006105	-	1128	-	ENSXCOP00000006037	375 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000004676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000004676's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000004676	rpusd4	86	49.699	ENSG00000165526	RPUSD4	90	48.276	Homo_sapiens
ENSXCOG00000004676	rpusd4	100	69.367	ENSAPOG00000011024	rpusd4	98	69.367	Acanthochromis_polyacanthus
ENSXCOG00000004676	rpusd4	86	50.000	ENSAMEG00000000127	-	86	50.301	Ailuropoda_melanoleuca
ENSXCOG00000004676	rpusd4	62	54.902	ENSAMEG00000005953	-	96	54.902	Ailuropoda_melanoleuca
ENSXCOG00000004676	rpusd4	87	74.154	ENSACIG00000003533	rpusd4	95	74.154	Amphilophus_citrinellus
ENSXCOG00000004676	rpusd4	99	69.036	ENSAOCG00000015409	rpusd4	97	69.036	Amphiprion_ocellaris
ENSXCOG00000004676	rpusd4	99	69.036	ENSAPEG00000018935	rpusd4	97	69.036	Amphiprion_percula
ENSXCOG00000004676	rpusd4	100	67.089	ENSATEG00000008059	rpusd4	97	67.089	Anabas_testudineus
ENSXCOG00000004676	rpusd4	73	51.071	ENSAPLG00000013250	RPUSD4	97	50.699	Anas_platyrhynchos
ENSXCOG00000004676	rpusd4	99	45.119	ENSACAG00000000189	RPUSD4	98	45.119	Anolis_carolinensis
ENSXCOG00000004676	rpusd4	89	48.844	ENSANAG00000024050	RPUSD4	90	49.133	Aotus_nancymaae
ENSXCOG00000004676	rpusd4	99	69.720	ENSACLG00000020996	rpusd4	99	69.720	Astatotilapia_calliptera
ENSXCOG00000004676	rpusd4	88	58.160	ENSAMXG00000031479	rpusd4	98	56.980	Astyanax_mexicanus
ENSXCOG00000004676	rpusd4	83	50.000	ENSBTAG00000020900	RPUSD4	93	47.778	Bos_taurus
ENSXCOG00000004676	rpusd4	88	48.673	ENSCJAG00000042850	RPUSD4	83	48.968	Callithrix_jacchus
ENSXCOG00000004676	rpusd4	80	53.074	ENSCAFG00000010488	RPUSD4	87	51.632	Canis_familiaris
ENSXCOG00000004676	rpusd4	80	53.074	ENSCAFG00020010621	RPUSD4	87	51.632	Canis_lupus_dingo
ENSXCOG00000004676	rpusd4	83	49.371	ENSCHIG00000009975	RPUSD4	93	46.944	Capra_hircus
ENSXCOG00000004676	rpusd4	89	50.145	ENSTSYG00000008456	RPUSD4	89	50.435	Carlito_syrichta
ENSXCOG00000004676	rpusd4	65	48.571	ENSCAPG00000006040	RPUSD4	93	48.571	Cavia_aperea
ENSXCOG00000004676	rpusd4	93	49.180	ENSCPOG00000014971	RPUSD4	94	49.180	Cavia_porcellus
ENSXCOG00000004676	rpusd4	88	48.378	ENSCCAG00000027838	RPUSD4	89	48.673	Cebus_capucinus
ENSXCOG00000004676	rpusd4	89	47.076	ENSCATG00000041570	RPUSD4	88	47.368	Cercocebus_atys
ENSXCOG00000004676	rpusd4	99	47.895	ENSCLAG00000016553	RPUSD4	96	47.895	Chinchilla_lanigera
ENSXCOG00000004676	rpusd4	91	46.974	ENSCSAG00000002274	RPUSD4	90	46.974	Chlorocebus_sabaeus
ENSXCOG00000004676	rpusd4	71	50.735	ENSCHOG00000010249	RPUSD4	94	51.103	Choloepus_hoffmanni
ENSXCOG00000004676	rpusd4	75	52.941	ENSCPBG00000011175	RPUSD4	99	53.287	Chrysemys_picta_bellii
ENSXCOG00000004676	rpusd4	71	37.276	ENSCSAVG00000000872	-	54	37.634	Ciona_savignyi
ENSXCOG00000004676	rpusd4	89	47.826	ENSCANG00000039684	RPUSD4	89	48.116	Colobus_angolensis_palliatus
ENSXCOG00000004676	rpusd4	89	50.292	ENSCGRG00001024141	Rpusd4	88	50.585	Cricetulus_griseus_chok1gshd
ENSXCOG00000004676	rpusd4	89	50.292	ENSCGRG00000014415	Rpusd4	88	50.585	Cricetulus_griseus_crigri
ENSXCOG00000004676	rpusd4	50	56.989	ENSCSEG00000006462	-	81	57.143	Cynoglossus_semilaevis
ENSXCOG00000004676	rpusd4	100	78.117	ENSCVAG00000008761	rpusd4	99	78.117	Cyprinodon_variegatus
ENSXCOG00000004676	rpusd4	100	78.117	ENSCVAG00000000392	rpusd4	98	80.857	Cyprinodon_variegatus
ENSXCOG00000004676	rpusd4	86	57.622	ENSDARG00000012674	rpusd4	90	57.622	Danio_rerio
ENSXCOG00000004676	rpusd4	92	48.056	ENSDNOG00000020026	RPUSD4	93	48.056	Dasypus_novemcinctus
ENSXCOG00000004676	rpusd4	94	45.799	ENSDORG00000016717	Rpusd4	93	46.341	Dipodomys_ordii
ENSXCOG00000004676	rpusd4	89	49.708	ENSETEG00000013953	RPUSD4	89	50.146	Echinops_telfairi
ENSXCOG00000004676	rpusd4	91	47.727	ENSEASG00005022982	RPUSD4	91	48.011	Equus_asinus_asinus
ENSXCOG00000004676	rpusd4	91	48.011	ENSECAG00000000557	RPUSD4	91	48.295	Equus_caballus
ENSXCOG00000004676	rpusd4	69	54.696	ENSEEUG00000014036	RPUSD4	68	54.696	Erinaceus_europaeus
ENSXCOG00000004676	rpusd4	94	57.373	ENSELUG00000008075	rpusd4	97	57.373	Esox_lucius
ENSXCOG00000004676	rpusd4	91	48.286	ENSFCAG00000029789	RPUSD4	90	48.857	Felis_catus
ENSXCOG00000004676	rpusd4	87	47.273	ENSFALG00000005171	RPUSD4	96	47.576	Ficedula_albicollis
ENSXCOG00000004676	rpusd4	92	48.229	ENSFDAG00000014307	RPUSD4	96	48.229	Fukomys_damarensis
ENSXCOG00000004676	rpusd4	100	79.231	ENSFHEG00000004329	rpusd4	100	79.231	Fundulus_heteroclitus
ENSXCOG00000004676	rpusd4	86	64.329	ENSGMOG00000017726	rpusd4	98	63.988	Gadus_morhua
ENSXCOG00000004676	rpusd4	73	54.286	ENSGALG00000024326	RPUSD4	92	49.550	Gallus_gallus
ENSXCOG00000004676	rpusd4	100	94.615	ENSGAFG00000021559	rpusd4	100	94.615	Gambusia_affinis
ENSXCOG00000004676	rpusd4	90	69.298	ENSGACG00000001657	rpusd4	97	75.451	Gasterosteus_aculeatus
ENSXCOG00000004676	rpusd4	94	48.747	ENSGAGG00000000132	RPUSD4	97	49.724	Gopherus_agassizii
ENSXCOG00000004676	rpusd4	86	50.000	ENSGGOG00000016494	RPUSD4	89	48.980	Gorilla_gorilla
ENSXCOG00000004676	rpusd4	98	70.811	ENSHBUG00000022838	rpusd4	99	69.720	Haplochromis_burtoni
ENSXCOG00000004676	rpusd4	93	48.087	ENSHGLG00000002285	RPUSD4	94	48.087	Heterocephalus_glaber_female
ENSXCOG00000004676	rpusd4	93	48.087	ENSHGLG00100006385	RPUSD4	94	48.087	Heterocephalus_glaber_male
ENSXCOG00000004676	rpusd4	99	64.286	ENSHCOG00000006612	rpusd4	99	64.286	Hippocampus_comes
ENSXCOG00000004676	rpusd4	91	56.647	ENSIPUG00000023879	rusd4	87	56.936	Ictalurus_punctatus
ENSXCOG00000004676	rpusd4	83	51.250	ENSSTOG00000025280	RPUSD4	87	51.562	Ictidomys_tridecemlineatus
ENSXCOG00000004676	rpusd4	91	48.159	ENSJJAG00000018673	Rpusd4	94	48.725	Jaculus_jaculus
ENSXCOG00000004676	rpusd4	99	67.929	ENSKMAG00000021805	rpusd4	100	67.929	Kryptolebias_marmoratus
ENSXCOG00000004676	rpusd4	97	66.839	ENSLBEG00000020394	rpusd4	93	75.150	Labrus_bergylta
ENSXCOG00000004676	rpusd4	86	50.453	ENSLACG00000011028	RPUSD4	89	48.361	Latimeria_chalumnae
ENSXCOG00000004676	rpusd4	89	44.868	ENSLOCG00000003124	rpusd4	89	45.161	Lepisosteus_oculatus
ENSXCOG00000004676	rpusd4	89	50.725	ENSLAFG00000005211	RPUSD4	100	44.407	Loxodonta_africana
ENSXCOG00000004676	rpusd4	89	47.368	ENSMFAG00000039513	RPUSD4	88	47.661	Macaca_fascicularis
ENSXCOG00000004676	rpusd4	89	47.076	ENSMMUG00000007933	RPUSD4	88	47.368	Macaca_mulatta
ENSXCOG00000004676	rpusd4	89	47.661	ENSMNEG00000027414	RPUSD4	88	47.953	Macaca_nemestrina
ENSXCOG00000004676	rpusd4	89	47.813	ENSMLEG00000042461	RPUSD4	89	48.105	Mandrillus_leucophaeus
ENSXCOG00000004676	rpusd4	100	68.462	ENSMAMG00000023839	rpusd4	100	68.462	Mastacembelus_armatus
ENSXCOG00000004676	rpusd4	99	69.720	ENSMZEG00005011999	rpusd4	99	69.720	Maylandia_zebra
ENSXCOG00000004676	rpusd4	72	52.857	ENSMGAG00000000840	RPUSD4	98	48.457	Meleagris_gallopavo
ENSXCOG00000004676	rpusd4	90	49.854	ENSMAUG00000010280	Rpusd4	89	49.854	Mesocricetus_auratus
ENSXCOG00000004676	rpusd4	87	49.558	ENSMICG00000015979	RPUSD4	90	52.961	Microcebus_murinus
ENSXCOG00000004676	rpusd4	86	49.547	ENSMOCG00000000661	Rpusd4	85	49.849	Microtus_ochrogaster
ENSXCOG00000004676	rpusd4	85	72.871	ENSMMOG00000021731	rpusd4	95	72.871	Mola_mola
ENSXCOG00000004676	rpusd4	84	52.484	ENSMODG00000004521	RPUSD4	80	52.795	Monodelphis_domestica
ENSXCOG00000004676	rpusd4	81	73.052	ENSMALG00000005839	rpusd4	98	71.118	Monopterus_albus
ENSXCOG00000004676	rpusd4	88	49.555	MGP_CAROLIEiJ_G0031954	Rpusd4	87	49.704	Mus_caroli
ENSXCOG00000004676	rpusd4	88	50.148	ENSMUSG00000032044	Rpusd4	87	50.296	Mus_musculus
ENSXCOG00000004676	rpusd4	88	49.555	MGP_PahariEiJ_G0014819	Rpusd4	87	49.852	Mus_pahari
ENSXCOG00000004676	rpusd4	88	49.852	MGP_SPRETEiJ_G0033078	Rpusd4	87	50.148	Mus_spretus
ENSXCOG00000004676	rpusd4	88	50.148	ENSMPUG00000006608	RPUSD4	87	50.445	Mustela_putorius_furo
ENSXCOG00000004676	rpusd4	85	49.847	ENSMLUG00000017328	-	85	50.153	Myotis_lucifugus
ENSXCOG00000004676	rpusd4	66	50.403	ENSMLUG00000029348	-	99	50.000	Myotis_lucifugus
ENSXCOG00000004676	rpusd4	89	50.145	ENSNGAG00000020847	Rpusd4	89	50.435	Nannospalax_galili
ENSXCOG00000004676	rpusd4	87	75.076	ENSNBRG00000005207	rpusd4	95	75.152	Neolamprologus_brichardi
ENSXCOG00000004676	rpusd4	89	47.953	ENSNLEG00000007465	RPUSD4	88	48.246	Nomascus_leucogenys
ENSXCOG00000004676	rpusd4	96	47.757	ENSMEUG00000004370	RPUSD4	96	47.757	Notamacropus_eugenii
ENSXCOG00000004676	rpusd4	94	47.439	ENSODEG00000004577	RPUSD4	95	47.439	Octodon_degus
ENSXCOG00000004676	rpusd4	99	70.663	ENSONIG00000018879	rpusd4	99	70.663	Oreochromis_niloticus
ENSXCOG00000004676	rpusd4	77	48.658	ENSOANG00000007247	RPUSD4	95	48.837	Ornithorhynchus_anatinus
ENSXCOG00000004676	rpusd4	98	47.680	ENSOCUG00000017039	RPUSD4	98	47.558	Oryctolagus_cuniculus
ENSXCOG00000004676	rpusd4	98	63.753	ENSORLG00000002750	rpusd4	93	68.786	Oryzias_latipes
ENSXCOG00000004676	rpusd4	94	66.292	ENSORLG00020002044	rpusd4	88	67.598	Oryzias_latipes_hni
ENSXCOG00000004676	rpusd4	94	65.730	ENSORLG00015020034	rpusd4	90	66.485	Oryzias_latipes_hsok
ENSXCOG00000004676	rpusd4	94	69.663	ENSOMEG00000004861	rpusd4	88	70.360	Oryzias_melastigma
ENSXCOG00000004676	rpusd4	86	50.303	ENSOGAG00000008922	RPUSD4	86	50.448	Otolemur_garnettii
ENSXCOG00000004676	rpusd4	83	49.371	ENSOARG00000012238	RPUSD4	92	46.944	Ovis_aries
ENSXCOG00000004676	rpusd4	86	49.699	ENSPPAG00000042883	RPUSD4	81	49.555	Pan_paniscus
ENSXCOG00000004676	rpusd4	91	48.571	ENSPPRG00000003081	RPUSD4	90	48.857	Panthera_pardus
ENSXCOG00000004676	rpusd4	91	48.571	ENSPTIG00000012059	RPUSD4	88	51.447	Panthera_tigris_altaica
ENSXCOG00000004676	rpusd4	86	49.699	ENSPTRG00000004454	RPUSD4	89	49.422	Pan_troglodytes
ENSXCOG00000004676	rpusd4	89	47.368	ENSPANG00000015040	RPUSD4	88	47.661	Papio_anubis
ENSXCOG00000004676	rpusd4	99	52.020	ENSPKIG00000023986	rpusd4	99	52.020	Paramormyrops_kingsleyae
ENSXCOG00000004676	rpusd4	77	52.525	ENSPSIG00000014268	RPUSD4	93	52.862	Pelodiscus_sinensis
ENSXCOG00000004676	rpusd4	99	59.847	ENSPMGG00000002806	rpusd4	93	65.976	Periophthalmus_magnuspinnatus
ENSXCOG00000004676	rpusd4	88	44.940	ENSPEMG00000000278	Rpusd4	86	44.970	Peromyscus_maniculatus_bairdii
ENSXCOG00000004676	rpusd4	81	40.237	ENSPMAG00000008183	rpusd4	97	40.533	Petromyzon_marinus
ENSXCOG00000004676	rpusd4	95	48.925	ENSPCIG00000010212	RPUSD4	96	48.925	Phascolarctos_cinereus
ENSXCOG00000004676	rpusd4	97	92.368	ENSPFOG00000019030	rpusd4	100	92.368	Poecilia_formosa
ENSXCOG00000004676	rpusd4	100	93.350	ENSPLAG00000016848	rpusd4	100	93.350	Poecilia_latipinna
ENSXCOG00000004676	rpusd4	100	92.327	ENSPMEG00000017534	rpusd4	100	92.327	Poecilia_mexicana
ENSXCOG00000004676	rpusd4	97	90.789	ENSPREG00000005689	rpusd4	98	90.789	Poecilia_reticulata
ENSXCOG00000004676	rpusd4	88	48.214	ENSPPYG00000004043	RPUSD4	87	48.512	Pongo_abelii
ENSXCOG00000004676	rpusd4	71	52.459	ENSPCAG00000000753	RPUSD4	71	52.459	Procavia_capensis
ENSXCOG00000004676	rpusd4	89	47.941	ENSPCOG00000020694	RPUSD4	90	47.941	Propithecus_coquereli
ENSXCOG00000004676	rpusd4	89	48.538	ENSPVAG00000000988	RPUSD4	89	48.830	Pteropus_vampyrus
ENSXCOG00000004676	rpusd4	97	71.883	ENSPNYG00000009652	rpusd4	96	71.883	Pundamilia_nyererei
ENSXCOG00000004676	rpusd4	94	55.285	ENSPNAG00000012264	rpusd4	94	55.285	Pygocentrus_nattereri
ENSXCOG00000004676	rpusd4	88	50.592	ENSRNOG00000011567	Rpusd4	87	50.888	Rattus_norvegicus
ENSXCOG00000004676	rpusd4	93	46.218	ENSRBIG00000034842	RPUSD4	91	45.730	Rhinopithecus_bieti
ENSXCOG00000004676	rpusd4	93	46.218	ENSRROG00000039753	RPUSD4	91	45.730	Rhinopithecus_roxellana
ENSXCOG00000004676	rpusd4	88	47.774	ENSSBOG00000030413	RPUSD4	88	48.071	Saimiri_boliviensis_boliviensis
ENSXCOG00000004676	rpusd4	78	52.685	ENSSHAG00000008304	RPUSD4	97	53.020	Sarcophilus_harrisii
ENSXCOG00000004676	rpusd4	87	57.100	ENSSFOG00015006203	rpusd4	89	57.402	Scleropages_formosus
ENSXCOG00000004676	rpusd4	100	65.736	ENSSMAG00000020978	rpusd4	100	65.736	Scophthalmus_maximus
ENSXCOG00000004676	rpusd4	99	67.857	ENSSDUG00000013399	rpusd4	100	67.857	Seriola_dumerili
ENSXCOG00000004676	rpusd4	99	67.857	ENSSLDG00000023507	rpusd4	100	67.857	Seriola_lalandi_dorsalis
ENSXCOG00000004676	rpusd4	77	54.545	ENSSPUG00000001401	RPUSD4	90	52.121	Sphenodon_punctatus
ENSXCOG00000004676	rpusd4	100	67.939	ENSSPAG00000012163	rpusd4	100	67.939	Stegastes_partitus
ENSXCOG00000004676	rpusd4	85	49.231	ENSSSCG00000015233	RPUSD4	85	49.538	Sus_scrofa
ENSXCOG00000004676	rpusd4	79	50.000	ENSTGUG00000000773	RPUSD4	99	50.333	Taeniopygia_guttata
ENSXCOG00000004676	rpusd4	95	67.297	ENSTRUG00000012283	rpusd4	93	67.297	Takifugu_rubripes
ENSXCOG00000004676	rpusd4	96	67.486	ENSTNIG00000014676	rpusd4	91	67.486	Tetraodon_nigroviridis
ENSXCOG00000004676	rpusd4	85	49.538	ENSTTRG00000001555	RPUSD4	88	49.275	Tursiops_truncatus
ENSXCOG00000004676	rpusd4	86	50.602	ENSUMAG00000002219	RPUSD4	86	50.904	Ursus_maritimus
ENSXCOG00000004676	rpusd4	63	47.500	ENSVPAG00000001066	RPUSD4	87	47.917	Vicugna_pacos
ENSXCOG00000004676	rpusd4	80	52.751	ENSVVUG00000020101	RPUSD4	87	51.335	Vulpes_vulpes
ENSXCOG00000004676	rpusd4	100	98.462	ENSXMAG00000023351	rpusd4	100	98.462	Xiphophorus_maculatus