EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000005013 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 14019 bases
Position: chrKQ557214.1:5329703-5343721
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006473	RRM_1	PF00076.22	1e-14	1	2
ENSXCOP00000006473	RRM_1	PF00076.22	1e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006553	-	1530	-	ENSXCOP00000006473	509 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005013's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005013's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005013	rnpc3	97	50.769	ENSG00000185946	RNPC3	96	54.887	Homo_sapiens
ENSXCOG00000005013	rnpc3	100	79.102	ENSAPOG00000017371	rnpc3	53	83.019	Acanthochromis_polyacanthus
ENSXCOG00000005013	rnpc3	97	50.189	ENSAMEG00000001694	RNPC3	95	52.233	Ailuropoda_melanoleuca
ENSXCOG00000005013	rnpc3	99	73.077	ENSACIG00000021043	rnpc3	56	76.087	Amphilophus_citrinellus
ENSXCOG00000005013	rnpc3	100	78.654	ENSAOCG00000014052	rnpc3	52	82.051	Amphiprion_ocellaris
ENSXCOG00000005013	rnpc3	100	78.462	ENSAPEG00000008739	rnpc3	98	77.308	Amphiprion_percula
ENSXCOG00000005013	rnpc3	100	76.437	ENSATEG00000021263	rnpc3	94	74.179	Anabas_testudineus
ENSXCOG00000005013	rnpc3	89	53.595	ENSAPLG00000015605	RNPC3	99	52.070	Anas_platyrhynchos
ENSXCOG00000005013	rnpc3	96	54.286	ENSACAG00000002029	RNPC3	96	53.892	Anolis_carolinensis
ENSXCOG00000005013	rnpc3	97	50.763	ENSANAG00000019950	RNPC3	96	51.946	Aotus_nancymaae
ENSXCOG00000005013	rnpc3	99	77.953	ENSACLG00000014702	rnpc3	52	78.788	Astatotilapia_calliptera
ENSXCOG00000005013	rnpc3	99	62.405	ENSAMXG00000033372	rnpc3	53	67.870	Astyanax_mexicanus
ENSXCOG00000005013	rnpc3	97	50.382	ENSBTAG00000019091	RNPC3	96	51.751	Bos_taurus
ENSXCOG00000005013	rnpc3	97	52.174	ENSCJAG00000035686	RNPC3	96	50.000	Callithrix_jacchus
ENSXCOG00000005013	rnpc3	97	51.331	ENSCAFG00000019972	RNPC3	96	52.335	Canis_familiaris
ENSXCOG00000005013	rnpc3	97	51.331	ENSCAFG00020011300	RNPC3	96	52.335	Canis_lupus_dingo
ENSXCOG00000005013	rnpc3	97	52.539	ENSCHIG00000020361	RNPC3	96	51.650	Capra_hircus
ENSXCOG00000005013	rnpc3	97	51.060	ENSTSYG00000030256	RNPC3	96	52.259	Carlito_syrichta
ENSXCOG00000005013	rnpc3	86	43.640	ENSCAPG00000013600	RNPC3	58	50.407	Cavia_aperea
ENSXCOG00000005013	rnpc3	97	50.969	ENSCPOG00000031638	RNPC3	51	51.880	Cavia_porcellus
ENSXCOG00000005013	rnpc3	97	50.480	ENSCCAG00000024301	RNPC3	96	52.174	Cebus_capucinus
ENSXCOG00000005013	rnpc3	97	50.672	ENSCATG00000002086	RNPC3	96	51.451	Cercocebus_atys
ENSXCOG00000005013	rnpc3	97	38.580	ENSCATG00000035930	-	52	48.117	Cercocebus_atys
ENSXCOG00000005013	rnpc3	97	50.781	ENSCLAG00000005169	RNPC3	51	51.711	Chinchilla_lanigera
ENSXCOG00000005013	rnpc3	97	50.672	ENSCSAG00000001519	RNPC3	96	51.451	Chlorocebus_sabaeus
ENSXCOG00000005013	rnpc3	97	55.689	ENSCPBG00000028311	RNPC3	95	55.888	Chrysemys_picta_bellii
ENSXCOG00000005013	rnpc3	94	35.950	ENSCSAVG00000002800	-	74	53.488	Ciona_savignyi
ENSXCOG00000005013	rnpc3	97	50.288	ENSCANG00000031444	RNPC3	96	51.064	Colobus_angolensis_palliatus
ENSXCOG00000005013	rnpc3	96	49.711	ENSCGRG00001019276	Rnpc3	95	52.673	Cricetulus_griseus_chok1gshd
ENSXCOG00000005013	rnpc3	89	47.401	ENSCGRG00000000053	Rnpc3	99	50.535	Cricetulus_griseus_crigri
ENSXCOG00000005013	rnpc3	99	72.978	ENSCSEG00000013475	rnpc3	52	77.273	Cynoglossus_semilaevis
ENSXCOG00000005013	rnpc3	100	83.556	ENSCVAG00000002645	rnpc3	54	85.145	Cyprinodon_variegatus
ENSXCOG00000005013	rnpc3	99	61.315	ENSDARG00000011247	rnpc3	94	69.886	Danio_rerio
ENSXCOG00000005013	rnpc3	97	51.677	ENSDNOG00000044555	-	95	51.677	Dasypus_novemcinctus
ENSXCOG00000005013	rnpc3	97	52.268	ENSDNOG00000047498	-	95	52.268	Dasypus_novemcinctus
ENSXCOG00000005013	rnpc3	98	50.190	ENSDORG00000027343	Rnpc3	96	51.367	Dipodomys_ordii
ENSXCOG00000005013	rnpc3	96	49.318	ENSEBUG00000002068	rnpc3	50	52.075	Eptatretus_burgeri
ENSXCOG00000005013	rnpc3	97	51.440	ENSEASG00005015957	RNPC3	96	52.642	Equus_asinus_asinus
ENSXCOG00000005013	rnpc3	97	51.737	ENSECAG00000021148	RNPC3	96	52.953	Equus_caballus
ENSXCOG00000005013	rnpc3	99	65.217	ENSELUG00000002264	rnpc3	99	64.083	Esox_lucius
ENSXCOG00000005013	rnpc3	98	51.423	ENSFCAG00000024312	RNPC3	96	52.827	Felis_catus
ENSXCOG00000005013	rnpc3	89	54.466	ENSFALG00000002580	RNPC3	99	53.810	Ficedula_albicollis
ENSXCOG00000005013	rnpc3	97	51.064	ENSFDAG00000019948	RNPC3	95	53.082	Fukomys_damarensis
ENSXCOG00000005013	rnpc3	100	77.800	ENSFHEG00000020647	rnpc3	100	77.886	Fundulus_heteroclitus
ENSXCOG00000005013	rnpc3	100	66.862	ENSGMOG00000019213	rnpc3	99	65.039	Gadus_morhua
ENSXCOG00000005013	rnpc3	100	92.486	ENSGAFG00000017236	rnpc3	54	93.382	Gambusia_affinis
ENSXCOG00000005013	rnpc3	100	75.292	ENSGACG00000002048	rnpc3	54	75.090	Gasterosteus_aculeatus
ENSXCOG00000005013	rnpc3	97	56.262	ENSGAGG00000008438	RNPC3	94	55.888	Gopherus_agassizii
ENSXCOG00000005013	rnpc3	97	47.000	ENSGGOG00000026201	-	52	49.042	Gorilla_gorilla
ENSXCOG00000005013	rnpc3	81	77.135	ENSHBUG00000015966	rnpc3	85	77.961	Haplochromis_burtoni
ENSXCOG00000005013	rnpc3	97	50.775	ENSHGLG00000001708	RNPC3	96	51.976	Heterocephalus_glaber_female
ENSXCOG00000005013	rnpc3	97	50.775	ENSHGLG00100003005	RNPC3	96	51.976	Heterocephalus_glaber_male
ENSXCOG00000005013	rnpc3	99	73.450	ENSHCOG00000017135	rnpc3	100	73.643	Hippocampus_comes
ENSXCOG00000005013	rnpc3	99	62.231	ENSIPUG00000002916	rnpc3	99	62.427	Ictalurus_punctatus
ENSXCOG00000005013	rnpc3	97	50.573	ENSSTOG00000025020	RNPC3	95	51.961	Ictidomys_tridecemlineatus
ENSXCOG00000005013	rnpc3	96	50.484	ENSJJAG00000010203	Rnpc3	96	51.190	Jaculus_jaculus
ENSXCOG00000005013	rnpc3	99	79.684	ENSKMAG00000017358	rnpc3	54	82.642	Kryptolebias_marmoratus
ENSXCOG00000005013	rnpc3	100	76.744	ENSLBEG00000024901	rnpc3	52	79.926	Labrus_bergylta
ENSXCOG00000005013	rnpc3	99	51.607	ENSLACG00000005720	RNPC3	92	55.906	Latimeria_chalumnae
ENSXCOG00000005013	rnpc3	99	56.250	ENSLOCG00000007986	rnpc3	53	60.300	Lepisosteus_oculatus
ENSXCOG00000005013	rnpc3	97	50.000	ENSLAFG00000032342	RNPC3	96	52.335	Loxodonta_africana
ENSXCOG00000005013	rnpc3	97	50.672	ENSMFAG00000002004	RNPC3	96	51.451	Macaca_fascicularis
ENSXCOG00000005013	rnpc3	97	39.558	ENSMFAG00000002917	-	54	48.548	Macaca_fascicularis
ENSXCOG00000005013	rnpc3	79	50.237	ENSMMUG00000002098	-	84	50.237	Macaca_mulatta
ENSXCOG00000005013	rnpc3	97	50.480	ENSMMUG00000018039	RNPC3	96	51.257	Macaca_mulatta
ENSXCOG00000005013	rnpc3	97	47.793	ENSMNEG00000033950	RNPC3	95	48.549	Macaca_nemestrina
ENSXCOG00000005013	rnpc3	97	40.323	ENSMLEG00000034644	-	95	40.354	Mandrillus_leucophaeus
ENSXCOG00000005013	rnpc3	97	50.672	ENSMLEG00000033628	RNPC3	96	51.451	Mandrillus_leucophaeus
ENSXCOG00000005013	rnpc3	100	69.038	ENSMAMG00000007496	rnpc3	100	69.038	Mastacembelus_armatus
ENSXCOG00000005013	rnpc3	99	76.291	ENSMZEG00005020233	rnpc3	54	75.986	Maylandia_zebra
ENSXCOG00000005013	rnpc3	89	53.448	ENSMGAG00000006381	RNPC3	99	52.155	Meleagris_gallopavo
ENSXCOG00000005013	rnpc3	97	50.292	ENSMAUG00000001358	Rnpc3	96	53.082	Mesocricetus_auratus
ENSXCOG00000005013	rnpc3	97	50.575	ENSMICG00000029591	RNPC3	96	51.562	Microcebus_murinus
ENSXCOG00000005013	rnpc3	97	50.682	ENSMOCG00000013423	Rnpc3	96	53.479	Microtus_ochrogaster
ENSXCOG00000005013	rnpc3	100	71.569	ENSMMOG00000005309	rnpc3	100	71.961	Mola_mola
ENSXCOG00000005013	rnpc3	97	52.663	ENSMODG00000002946	RNPC3	95	50.690	Monodelphis_domestica
ENSXCOG00000005013	rnpc3	99	70.270	ENSMALG00000015471	rnpc3	100	65.891	Monopterus_albus
ENSXCOG00000005013	rnpc3	97	50.586	MGP_CAROLIEiJ_G0025555	Rnpc3	96	53.614	Mus_caroli
ENSXCOG00000005013	rnpc3	97	49.711	ENSMUSG00000027981	Rnpc3	99	50.943	Mus_musculus
ENSXCOG00000005013	rnpc3	98	49.713	MGP_PahariEiJ_G0027001	Rnpc3	97	52.652	Mus_pahari
ENSXCOG00000005013	rnpc3	97	49.711	MGP_SPRETEiJ_G0026505	Rnpc3	96	52.673	Mus_spretus
ENSXCOG00000005013	rnpc3	97	51.233	ENSMPUG00000007349	RNPC3	96	52.849	Mustela_putorius_furo
ENSXCOG00000005013	rnpc3	97	49.711	ENSMLUG00000028743	RNPC3	96	52.456	Myotis_lucifugus
ENSXCOG00000005013	rnpc3	97	51.946	ENSNGAG00000010939	Rnpc3	96	53.175	Nannospalax_galili
ENSXCOG00000005013	rnpc3	99	78.150	ENSNBRG00000012196	rnpc3	50	78.788	Neolamprologus_brichardi
ENSXCOG00000005013	rnpc3	97	50.860	ENSNLEG00000012013	RNPC3	96	52.047	Nomascus_leucogenys
ENSXCOG00000005013	rnpc3	97	50.485	ENSODEG00000007612	RNPC3	96	51.683	Octodon_degus
ENSXCOG00000005013	rnpc3	99	77.907	ENSONIG00000004770	rnpc3	54	79.008	Oreochromis_niloticus
ENSXCOG00000005013	rnpc3	92	53.165	ENSOANG00000008220	RNPC3	56	52.091	Ornithorhynchus_anatinus
ENSXCOG00000005013	rnpc3	97	53.892	ENSOCUG00000004016	RNPC3	95	53.386	Oryctolagus_cuniculus
ENSXCOG00000005013	rnpc3	100	77.104	ENSORLG00000005694	rnpc3	100	73.386	Oryzias_latipes
ENSXCOG00000005013	rnpc3	100	77.691	ENSORLG00020005513	rnpc3	100	73.973	Oryzias_latipes_hni
ENSXCOG00000005013	rnpc3	100	77.104	ENSORLG00015002179	rnpc3	100	73.777	Oryzias_latipes_hsok
ENSXCOG00000005013	rnpc3	100	70.301	ENSOMEG00000017737	rnpc3	100	75.930	Oryzias_melastigma
ENSXCOG00000005013	rnpc3	98	51.429	ENSOGAG00000026182	RNPC3	96	52.838	Otolemur_garnettii
ENSXCOG00000005013	rnpc3	97	53.242	ENSOARG00000018719	RNPC3	96	51.650	Ovis_aries
ENSXCOG00000005013	rnpc3	97	46.894	ENSPPAG00000030278	-	97	46.813	Pan_paniscus
ENSXCOG00000005013	rnpc3	97	50.189	ENSPPAG00000037459	RNPC3	96	51.351	Pan_paniscus
ENSXCOG00000005013	rnpc3	98	51.423	ENSPPRG00000020246	RNPC3	96	52.827	Panthera_pardus
ENSXCOG00000005013	rnpc3	98	51.423	ENSPTIG00000009887	RNPC3	97	52.827	Panthera_tigris_altaica
ENSXCOG00000005013	rnpc3	97	50.480	ENSPTRG00000033902	RNPC3	96	51.257	Pan_troglodytes
ENSXCOG00000005013	rnpc3	97	42.115	ENSPTRG00000044227	-	97	46.092	Pan_troglodytes
ENSXCOG00000005013	rnpc3	97	42.771	ENSPANG00000029957	-	51	47.718	Papio_anubis
ENSXCOG00000005013	rnpc3	97	50.769	ENSPANG00000012137	RNPC3	96	51.550	Papio_anubis
ENSXCOG00000005013	rnpc3	99	61.047	ENSPKIG00000008828	rnpc3	99	62.476	Paramormyrops_kingsleyae
ENSXCOG00000005013	rnpc3	63	52.905	ENSPSIG00000007396	RNPC3	99	54.128	Pelodiscus_sinensis
ENSXCOG00000005013	rnpc3	97	63.511	ENSPMGG00000011742	rnpc3	98	63.690	Periophthalmus_magnuspinnatus
ENSXCOG00000005013	rnpc3	89	47.992	ENSPEMG00000020112	Rnpc3	99	51.193	Peromyscus_maniculatus_bairdii
ENSXCOG00000005013	rnpc3	98	41.296	ENSPMAG00000003778	rnpc3	97	44.487	Petromyzon_marinus
ENSXCOG00000005013	rnpc3	97	53.254	ENSPCIG00000004415	-	95	51.282	Phascolarctos_cinereus
ENSXCOG00000005013	rnpc3	100	92.085	ENSPFOG00000009895	rnpc3	53	91.852	Poecilia_formosa
ENSXCOG00000005013	rnpc3	100	91.313	ENSPLAG00000012023	rnpc3	100	90.154	Poecilia_latipinna
ENSXCOG00000005013	rnpc3	100	92.278	ENSPMEG00000003663	rnpc3	100	91.120	Poecilia_mexicana
ENSXCOG00000005013	rnpc3	100	91.683	ENSPREG00000010206	rnpc3	100	90.522	Poecilia_reticulata
ENSXCOG00000005013	rnpc3	81	46.501	ENSPPYG00000001102	RNPC3	95	46.789	Pongo_abelii
ENSXCOG00000005013	rnpc3	99	77.756	ENSPNYG00000020603	rnpc3	52	78.409	Pundamilia_nyererei
ENSXCOG00000005013	rnpc3	97	50.487	ENSRNOG00000017310	Rnpc3	95	53.507	Rattus_norvegicus
ENSXCOG00000005013	rnpc3	97	46.591	ENSRBIG00000043897	RNPC3	95	47.104	Rhinopithecus_bieti
ENSXCOG00000005013	rnpc3	97	50.672	ENSRROG00000032334	RNPC3	96	51.451	Rhinopithecus_roxellana
ENSXCOG00000005013	rnpc3	98	50.285	ENSSBOG00000024473	RNPC3	96	51.357	Saimiri_boliviensis_boliviensis
ENSXCOG00000005013	rnpc3	97	52.539	ENSSHAG00000011859	RNPC3	95	50.781	Sarcophilus_harrisii
ENSXCOG00000005013	rnpc3	97	67.404	ENSSFOG00015013055	rnpc3	99	67.404	Scleropages_formosus
ENSXCOG00000005013	rnpc3	100	74.379	ENSSMAG00000020346	rnpc3	53	78.182	Scophthalmus_maximus
ENSXCOG00000005013	rnpc3	100	76.437	ENSSDUG00000006600	rnpc3	54	78.909	Seriola_dumerili
ENSXCOG00000005013	rnpc3	100	76.628	ENSSLDG00000007979	rnpc3	54	79.273	Seriola_lalandi_dorsalis
ENSXCOG00000005013	rnpc3	97	51.411	ENSSPUG00000003872	-	92	49.194	Sphenodon_punctatus
ENSXCOG00000005013	rnpc3	100	78.978	ENSSPAG00000005633	rnpc3	100	78.978	Stegastes_partitus
ENSXCOG00000005013	rnpc3	97	52.165	ENSSSCG00000037254	RNPC3	96	52.456	Sus_scrofa
ENSXCOG00000005013	rnpc3	89	54.803	ENSTGUG00000004795	-	57	52.490	Taeniopygia_guttata
ENSXCOG00000005013	rnpc3	99	72.254	ENSTNIG00000018963	rnpc3	53	75.185	Tetraodon_nigroviridis
ENSXCOG00000005013	rnpc3	97	50.474	ENSUMAG00000007775	RNPC3	97	52.964	Ursus_maritimus
ENSXCOG00000005013	rnpc3	97	51.331	ENSVVUG00000000331	RNPC3	96	52.335	Vulpes_vulpes
ENSXCOG00000005013	rnpc3	98	43.580	ENSXETG00000025027	rnpc3	97	41.874	Xenopus_tropicalis
ENSXCOG00000005013	rnpc3	100	95.376	ENSXMAG00000006495	rnpc3	100	95.376	Xiphophorus_maculatus