EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000005127 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm4
Alias: zgc:158644
Full Name: R3H domain containing 4
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5695 bases
Position: chrKQ557224.1:22475791-22481485
Accession: ZDB-GENE-070112-1352
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006622	R3H	PF01424.22	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006703	-	771	-	ENSXCOP00000006622	256 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005127's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005127	r3hdm4	100	53.704	ENSG00000198858	R3HDM4	100	53.704	Homo_sapiens
ENSXCOG00000005127	r3hdm4	92	56.904	ENSAMEG00000003001	R3HDM4	97	56.904	Ailuropoda_melanoleuca
ENSXCOG00000005127	r3hdm4	100	84.436	ENSACIG00000004672	r3hdm4	100	84.436	Amphilophus_citrinellus
ENSXCOG00000005127	r3hdm4	98	81.028	ENSATEG00000015913	r3hdm4	99	81.028	Anabas_testudineus
ENSXCOG00000005127	r3hdm4	92	56.485	ENSANAG00000029748	R3HDM4	98	56.485	Aotus_nancymaae
ENSXCOG00000005127	r3hdm4	93	56.000	ENSBTAG00000046406	R3HDM4	100	53.285	Bos_taurus
ENSXCOG00000005127	r3hdm4	93	55.823	ENSCJAG00000020114	R3HDM4	92	55.823	Callithrix_jacchus
ENSXCOG00000005127	r3hdm4	92	56.904	ENSCAFG00000019665	R3HDM4	87	56.904	Canis_familiaris
ENSXCOG00000005127	r3hdm4	92	57.322	ENSCAFG00020016880	R3HDM4	87	57.322	Canis_lupus_dingo
ENSXCOG00000005127	r3hdm4	100	53.650	ENSCHIG00000020110	R3HDM4	100	53.650	Capra_hircus
ENSXCOG00000005127	r3hdm4	92	56.067	ENSCCAG00000019955	R3HDM4	86	56.067	Cebus_capucinus
ENSXCOG00000005127	r3hdm4	100	53.309	ENSCATG00000037269	R3HDM4	100	54.044	Cercocebus_atys
ENSXCOG00000005127	r3hdm4	92	56.303	ENSCLAG00000007094	R3HDM4	97	56.303	Chinchilla_lanigera
ENSXCOG00000005127	r3hdm4	100	54.444	ENSCSAG00000012574	R3HDM4	100	54.444	Chlorocebus_sabaeus
ENSXCOG00000005127	r3hdm4	100	59.774	ENSCPBG00000009805	R3HDM4	100	59.774	Chrysemys_picta_bellii
ENSXCOG00000005127	r3hdm4	92	56.680	ENSCANG00000040439	R3HDM4	86	56.680	Colobus_angolensis_palliatus
ENSXCOG00000005127	r3hdm4	91	55.882	ENSCGRG00001021650	R3hdm4	89	55.882	Cricetulus_griseus_chok1gshd
ENSXCOG00000005127	r3hdm4	91	55.882	ENSCGRG00000013169	R3hdm4	89	55.882	Cricetulus_griseus_crigri
ENSXCOG00000005127	r3hdm4	100	73.438	ENSCSEG00000018211	r3hdm4	99	73.438	Cynoglossus_semilaevis
ENSXCOG00000005127	r3hdm4	100	89.062	ENSCVAG00000017127	r3hdm4	100	89.062	Cyprinodon_variegatus
ENSXCOG00000005127	r3hdm4	91	55.833	ENSDORG00000006605	R3hdm4	96	55.833	Dipodomys_ordii
ENSXCOG00000005127	r3hdm4	92	56.485	ENSEASG00005021556	R3HDM4	86	56.485	Equus_asinus_asinus
ENSXCOG00000005127	r3hdm4	92	56.485	ENSECAG00000000003	R3HDM4	87	56.485	Equus_caballus
ENSXCOG00000005127	r3hdm4	93	57.200	ENSFCAG00000042437	R3HDM4	92	57.200	Felis_catus
ENSXCOG00000005127	r3hdm4	90	61.803	ENSFALG00000013938	R3HDM4	96	61.803	Ficedula_albicollis
ENSXCOG00000005127	r3hdm4	92	56.067	ENSFDAG00000017040	R3HDM4	97	56.067	Fukomys_damarensis
ENSXCOG00000005127	r3hdm4	100	89.844	ENSFHEG00000017636	r3hdm4	100	89.844	Fundulus_heteroclitus
ENSXCOG00000005127	r3hdm4	95	69.547	ENSGMOG00000001231	r3hdm4	100	69.547	Gadus_morhua
ENSXCOG00000005127	r3hdm4	91	60.417	ENSGALG00000001998	R3HDM4	90	60.417	Gallus_gallus
ENSXCOG00000005127	r3hdm4	100	95.703	ENSGAFG00000004173	r3hdm4	100	95.703	Gambusia_affinis
ENSXCOG00000005127	r3hdm4	100	59.774	ENSGAGG00000019698	R3HDM4	100	59.774	Gopherus_agassizii
ENSXCOG00000005127	r3hdm4	92	56.485	ENSGGOG00000008040	R3HDM4	97	56.485	Gorilla_gorilla
ENSXCOG00000005127	r3hdm4	100	84.436	ENSHBUG00000014810	r3hdm4	100	84.436	Haplochromis_burtoni
ENSXCOG00000005127	r3hdm4	92	55.042	ENSHGLG00000016194	R3HDM4	88	55.042	Heterocephalus_glaber_female
ENSXCOG00000005127	r3hdm4	99	76.953	ENSHCOG00000008422	r3hdm4	99	76.953	Hippocampus_comes
ENSXCOG00000005127	r3hdm4	100	67.568	ENSIPUG00000006716	r3hdm4	100	67.568	Ictalurus_punctatus
ENSXCOG00000005127	r3hdm4	92	55.230	ENSSTOG00000023015	R3HDM4	97	55.230	Ictidomys_tridecemlineatus
ENSXCOG00000005127	r3hdm4	91	55.508	ENSJJAG00000012475	R3hdm4	89	55.508	Jaculus_jaculus
ENSXCOG00000005127	r3hdm4	100	85.214	ENSKMAG00000005853	r3hdm4	100	85.214	Kryptolebias_marmoratus
ENSXCOG00000005127	r3hdm4	100	82.490	ENSLBEG00000000730	r3hdm4	100	82.490	Labrus_bergylta
ENSXCOG00000005127	r3hdm4	100	61.977	ENSLACG00000016445	R3HDM4	100	61.977	Latimeria_chalumnae
ENSXCOG00000005127	r3hdm4	100	69.847	ENSLOCG00000002423	r3hdm4	100	70.229	Lepisosteus_oculatus
ENSXCOG00000005127	r3hdm4	91	56.118	ENSLAFG00000017796	R3HDM4	91	56.118	Loxodonta_africana
ENSXCOG00000005127	r3hdm4	100	54.074	ENSMFAG00000044131	R3HDM4	100	54.074	Macaca_fascicularis
ENSXCOG00000005127	r3hdm4	86	58.222	ENSMMUG00000009682	R3HDM4	90	58.222	Macaca_mulatta
ENSXCOG00000005127	r3hdm4	92	56.904	ENSMNEG00000044115	R3HDM4	96	56.904	Macaca_nemestrina
ENSXCOG00000005127	r3hdm4	93	55.738	ENSMLEG00000035693	R3HDM4	89	56.148	Mandrillus_leucophaeus
ENSXCOG00000005127	r3hdm4	87	79.911	ENSMAMG00000005652	r3hdm4	91	79.911	Mastacembelus_armatus
ENSXCOG00000005127	r3hdm4	89	55.983	ENSMAUG00000010611	R3hdm4	90	55.983	Mesocricetus_auratus
ENSXCOG00000005127	r3hdm4	100	52.574	ENSMICG00000010124	R3HDM4	100	52.574	Microcebus_murinus
ENSXCOG00000005127	r3hdm4	91	55.085	ENSMOCG00000002646	R3hdm4	89	56.118	Microtus_ochrogaster
ENSXCOG00000005127	r3hdm4	100	80.859	ENSMMOG00000008253	r3hdm4	100	80.859	Mola_mola
ENSXCOG00000005127	r3hdm4	89	59.740	ENSMODG00000005698	R3HDM4	99	59.740	Monodelphis_domestica
ENSXCOG00000005127	r3hdm4	100	80.156	ENSMALG00000018856	r3hdm4	100	80.156	Monopterus_albus
ENSXCOG00000005127	r3hdm4	99	51.894	MGP_CAROLIEiJ_G0015551	R3hdm4	99	52.652	Mus_caroli
ENSXCOG00000005127	r3hdm4	99	51.908	ENSMUSG00000035781	R3hdm4	99	52.672	Mus_musculus
ENSXCOG00000005127	r3hdm4	99	52.273	MGP_PahariEiJ_G0030964	R3hdm4	99	53.030	Mus_pahari
ENSXCOG00000005127	r3hdm4	99	52.652	MGP_SPRETEiJ_G0016369	-	84	53.409	Mus_spretus
ENSXCOG00000005127	r3hdm4	93	57.613	ENSMPUG00000009394	R3HDM4	90	57.613	Mustela_putorius_furo
ENSXCOG00000005127	r3hdm4	100	83.658	ENSNBRG00000004438	r3hdm4	100	83.658	Neolamprologus_brichardi
ENSXCOG00000005127	r3hdm4	87	53.247	ENSNLEG00000001022	R3HDM4	99	53.247	Nomascus_leucogenys
ENSXCOG00000005127	r3hdm4	92	58.159	ENSMEUG00000011020	R3HDM4	99	58.159	Notamacropus_eugenii
ENSXCOG00000005127	r3hdm4	92	56.303	ENSODEG00000011745	R3HDM4	88	56.303	Octodon_degus
ENSXCOG00000005127	r3hdm4	100	84.436	ENSONIG00000012675	r3hdm4	92	84.436	Oreochromis_niloticus
ENSXCOG00000005127	r3hdm4	100	81.323	ENSOMEG00000003005	r3hdm4	100	81.323	Oryzias_melastigma
ENSXCOG00000005127	r3hdm4	91	56.540	ENSOGAG00000025656	R3HDM4	89	56.540	Otolemur_garnettii
ENSXCOG00000005127	r3hdm4	92	56.485	ENSOARG00000009945	R3HDM4	97	56.485	Ovis_aries
ENSXCOG00000005127	r3hdm4	92	56.485	ENSPPAG00000042371	R3HDM4	97	56.485	Pan_paniscus
ENSXCOG00000005127	r3hdm4	100	54.074	ENSPANG00000015203	R3HDM4	100	54.074	Papio_anubis
ENSXCOG00000005127	r3hdm4	100	64.259	ENSPKIG00000007421	r3hdm4	100	65.779	Paramormyrops_kingsleyae
ENSXCOG00000005127	r3hdm4	100	73.643	ENSPMGG00000020467	r3hdm4	100	73.643	Periophthalmus_magnuspinnatus
ENSXCOG00000005127	r3hdm4	91	57.203	ENSPEMG00000008365	Tmem259	97	57.203	Peromyscus_maniculatus_bairdii
ENSXCOG00000005127	r3hdm4	100	94.531	ENSPFOG00000003199	r3hdm4	100	94.531	Poecilia_formosa
ENSXCOG00000005127	r3hdm4	100	94.141	ENSPMEG00000014183	r3hdm4	100	94.141	Poecilia_mexicana
ENSXCOG00000005127	r3hdm4	100	94.922	ENSPREG00000010709	r3hdm4	100	94.922	Poecilia_reticulata
ENSXCOG00000005127	r3hdm4	92	56.540	ENSPPYG00000009297	R3HDM4	88	56.540	Pongo_abelii
ENSXCOG00000005127	r3hdm4	58	59.091	ENSPCAG00000010997	R3HDM4	55	59.091	Procavia_capensis
ENSXCOG00000005127	r3hdm4	100	52.941	ENSPCOG00000016785	R3HDM4	100	52.941	Propithecus_coquereli
ENSXCOG00000005127	r3hdm4	100	84.436	ENSPNYG00000017489	r3hdm4	100	84.436	Pundamilia_nyererei
ENSXCOG00000005127	r3hdm4	99	51.894	ENSRNOG00000011489	R3hdm4	99	52.830	Rattus_norvegicus
ENSXCOG00000005127	r3hdm4	92	56.904	ENSRROG00000028842	R3HDM4	88	56.904	Rhinopithecus_roxellana
ENSXCOG00000005127	r3hdm4	92	55.200	ENSSBOG00000019298	R3HDM4	73	56.000	Saimiri_boliviensis_boliviensis
ENSXCOG00000005127	r3hdm4	57	59.184	ENSSHAG00000003036	-	100	59.184	Sarcophilus_harrisii
ENSXCOG00000005127	r3hdm4	97	70.683	ENSSFOG00015020574	r3hdm4	91	70.400	Scleropages_formosus
ENSXCOG00000005127	r3hdm4	100	80.934	ENSSMAG00000021090	r3hdm4	74	80.934	Scophthalmus_maximus
ENSXCOG00000005127	r3hdm4	100	83.268	ENSSDUG00000008488	r3hdm4	100	83.268	Seriola_dumerili
ENSXCOG00000005127	r3hdm4	100	82.879	ENSSLDG00000025328	r3hdm4	100	82.879	Seriola_lalandi_dorsalis
ENSXCOG00000005127	r3hdm4	93	60.816	ENSSPUG00000005434	R3HDM4	93	60.816	Sphenodon_punctatus
ENSXCOG00000005127	r3hdm4	99	79.377	ENSSPAG00000002562	r3hdm4	99	79.377	Stegastes_partitus
ENSXCOG00000005127	r3hdm4	93	56.800	ENSSSCG00000013419	R3HDM4	91	56.800	Sus_scrofa
ENSXCOG00000005127	r3hdm4	77	53.202	ENSTGUG00000000663	R3HDM4	97	53.695	Taeniopygia_guttata
ENSXCOG00000005127	r3hdm4	92	57.384	ENSTTRG00000001470	R3HDM4	97	57.384	Tursiops_truncatus
ENSXCOG00000005127	r3hdm4	93	51.210	ENSUAMG00000005751	R3HDM4	100	57.778	Ursus_americanus
ENSXCOG00000005127	r3hdm4	93	56.000	ENSVVUG00000022685	R3HDM4	91	56.000	Vulpes_vulpes
ENSXCOG00000005127	r3hdm4	97	46.988	ENSXETG00000033624	R3HDM4	96	46.988	Xenopus_tropicalis
ENSXCOG00000005127	r3hdm4	100	99.219	ENSXMAG00000022875	r3hdm4	100	99.219	Xiphophorus_maculatus