EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXCOG00000005158 (Gene tree)
Gene ID
-
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein%2C nuclear 1
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
4992 bases
Position
chrKQ557214.1:6480148-6485139
Accession
ZDB-GENE-040426-2401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000006667RRM_1PF00076.221e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000006748-513-ENSXCOP00000006667170 (aa)--
Gene Model
Click here to download ENSXCOG00000005158's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005158's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000005158pabpn18981.579ENSG00000100836PABPN19769.714Homo_sapiens
ENSXCOG00000005158pabpn18981.579ENSG00000258643BCL2L2-PABPN15368.927Homo_sapiens
ENSXCOG00000005158pabpn19885.714ENSAPOG00000016425pabpn17585.714Acanthochromis_polyacanthus
ENSXCOG00000005158pabpn18981.579ENSAMEG00000007048BCL2L2-PABPN19269.714Ailuropoda_melanoleuca
ENSXCOG00000005158pabpn19887.209ENSACIG00000021744pabpn19787.209Amphilophus_citrinellus
ENSXCOG00000005158pabpn19885.714ENSAOCG00000015805pabpn17585.714Amphiprion_ocellaris
ENSXCOG00000005158pabpn19885.714ENSAPEG00000009623pabpn17585.714Amphiprion_percula
ENSXCOG00000005158pabpn19886.286ENSATEG00000020531pabpn17586.286Anabas_testudineus
ENSXCOG00000005158pabpn19184.416ENSACAG00000006185-6271.751Anolis_carolinensis
ENSXCOG00000005158pabpn18981.579ENSANAG00000024513-6368.927Aotus_nancymaae
ENSXCOG00000005158pabpn19185.535ENSACLG00000016374pabpn15585.535Astatotilapia_calliptera
ENSXCOG00000005158pabpn19886.628ENSAMXG00000000452pabpn19786.628Astyanax_mexicanus
ENSXCOG00000005158pabpn17682.946ENSBTAG00000050594-6063.277Bos_taurus
ENSXCOG00000005158pabpn18980.263ENSBTAG00000053753-6567.797Bos_taurus
ENSXCOG00000005158pabpn18981.579ENSBTAG00000006884PABPN15768.927Bos_taurus
ENSXCOG00000005158pabpn18981.579ENSCJAG00000007960-6568.927Callithrix_jacchus
ENSXCOG00000005158pabpn18979.605ENSCJAG00000004407-8768.000Callithrix_jacchus
ENSXCOG00000005158pabpn19874.251ENSCAFG00000011482PABPN15768.927Canis_familiaris
ENSXCOG00000005158pabpn18981.579ENSCAFG00020007298-5768.927Canis_lupus_dingo
ENSXCOG00000005158pabpn18981.579ENSCAFG00020006651-5768.927Canis_lupus_dingo
ENSXCOG00000005158pabpn18981.579ENSCHIG00000012184PABPN15768.927Capra_hircus
ENSXCOG00000005158pabpn18981.579ENSTSYG00000033996BCL2L2-PABPN19769.714Carlito_syrichta
ENSXCOG00000005158pabpn18280.714ENSCAPG00000009461-9280.000Cavia_aperea
ENSXCOG00000005158pabpn18980.921ENSCPOG00000025574PABPN15768.362Cavia_porcellus
ENSXCOG00000005158pabpn18981.579ENSCCAG00000033954BCL2L2-PABPN16568.927Cebus_capucinus
ENSXCOG00000005158pabpn18981.579ENSCATG00000038536BCL2L2-PABPN16568.927Cercocebus_atys
ENSXCOG00000005158pabpn19280.128ENSCLAG00000012423PABPN15877.564Chinchilla_lanigera
ENSXCOG00000005158pabpn18980.263ENSCSAG00000016036PABPN15767.797Chlorocebus_sabaeus
ENSXCOG00000005158pabpn19172.078ENSCHOG00000004798BCL2L2-PABPN17561.582Choloepus_hoffmanni
ENSXCOG00000005158pabpn18984.868ENSCPBG00000026060-9772.000Chrysemys_picta_bellii
ENSXCOG00000005158pabpn19855.491ENSCING00000012468-5662.992Ciona_intestinalis
ENSXCOG00000005158pabpn19854.598ENSCSAVG00000002001-6075.248Ciona_savignyi
ENSXCOG00000005158pabpn18981.579ENSCANG00000009750BCL2L2-PABPN19769.714Colobus_angolensis_palliatus
ENSXCOG00000005158pabpn18572.222ENSCANG00000030980-6161.078Colobus_angolensis_palliatus
ENSXCOG00000005158pabpn18980.921ENSCGRG00001019696Pabpn19769.143Cricetulus_griseus_chok1gshd
ENSXCOG00000005158pabpn18980.921ENSCGRG00000011102Pabpn19769.143Cricetulus_griseus_crigri
ENSXCOG00000005158pabpn19884.571ENSCSEG00000008774pabpn17584.571Cynoglossus_semilaevis
ENSXCOG00000005158pabpn19094.771ENSCVAG00000003152pabpn17584.000Cyprinodon_variegatus
ENSXCOG00000005158pabpn19886.628ENSDARG00000045373pabpn17386.628Danio_rerio
ENSXCOG00000005158pabpn18758.784ENSDARG00000087996pabpn1l6073.469Danio_rerio
ENSXCOG00000005158pabpn18981.579ENSDNOG00000023682PABPN15768.927Dasypus_novemcinctus
ENSXCOG00000005158pabpn18980.263ENSDORG00000028966-5767.797Dipodomys_ordii
ENSXCOG00000005158pabpn16283.810ENSDORG00000023928-7383.810Dipodomys_ordii
ENSXCOG00000005158pabpn19871.839ENSEBUG00000002322pabpn17471.512Eptatretus_burgeri
ENSXCOG00000005158pabpn18981.579ENSEASG00005011716PABPN15768.927Equus_asinus_asinus
ENSXCOG00000005158pabpn18880.667ENSECAG00000011652PABPN15269.032Equus_caballus
ENSXCOG00000005158pabpn19177.273ENSEEUG00000012973-5961.582Erinaceus_europaeus
ENSXCOG00000005158pabpn18994.079ENSELUG00000022654pabpn17281.395Esox_lucius
ENSXCOG00000005158pabpn18981.579ENSFCAG00000031922PABPN15768.927Felis_catus
ENSXCOG00000005158pabpn18981.579ENSFDAG00000018381BCL2L2-PABPN19769.714Fukomys_damarensis
ENSXCOG00000005158pabpn18994.040ENSFHEG00000007215pabpn17380.233Fundulus_heteroclitus
ENSXCOG00000005158pabpn19186.250ENSGMOG00000003922pabpn15686.250Gadus_morhua
ENSXCOG00000005158pabpn19874.405ENSGALG00000052930-5172.472Gallus_gallus
ENSXCOG00000005158pabpn19887.429ENSGAFG00000017099pabpn17587.429Gambusia_affinis
ENSXCOG00000005158pabpn19881.915ENSGACG00000002167pabpn17681.915Gasterosteus_aculeatus
ENSXCOG00000005158pabpn18981.579ENSGGOG00000022683-6568.927Gorilla_gorilla
ENSXCOG00000005158pabpn19168.831ENSGGOG00000025919-6776.923Gorilla_gorilla
ENSXCOG00000005158pabpn18568.750ENSGGOG00000039675-6359.281Gorilla_gorilla
ENSXCOG00000005158pabpn19885.143ENSHBUG00000019523pabpn17585.143Haplochromis_burtoni
ENSXCOG00000005158pabpn18980.921ENSHGLG00000002927-8176.744Heterocephalus_glaber_female
ENSXCOG00000005158pabpn19856.287ENSHGLG00000009842-9854.237Heterocephalus_glaber_female
ENSXCOG00000005158pabpn18969.536ENSHGLG00100015565-5068.627Heterocephalus_glaber_male
ENSXCOG00000005158pabpn19464.634ENSHGLG00100018935-9665.294Heterocephalus_glaber_male
ENSXCOG00000005158pabpn18980.921ENSHGLG00100006673-9769.143Heterocephalus_glaber_male
ENSXCOG00000005158pabpn18987.500ENSHCOG00000004655pabpn17481.714Hippocampus_comes
ENSXCOG00000005158pabpn18991.447ENSIPUG00000000180-7580.814Ictalurus_punctatus
ENSXCOG00000005158pabpn19886.628ENSIPUG00000008085PABPN17386.628Ictalurus_punctatus
ENSXCOG00000005158pabpn18981.579ENSSTOG00000029847BCL2L2-PABPN19769.714Ictidomys_tridecemlineatus
ENSXCOG00000005158pabpn18981.579ENSJJAG00000023507Gm205219769.714Jaculus_jaculus
ENSXCOG00000005158pabpn19885.227ENSKMAG00000018748pabpn17585.227Kryptolebias_marmoratus
ENSXCOG00000005158pabpn19886.286ENSLBEG00000027266pabpn17586.286Labrus_bergylta
ENSXCOG00000005158pabpn18582.639ENSLACG00000000646pabpn16873.885Latimeria_chalumnae
ENSXCOG00000005158pabpn19863.095ENSLOCG00000004694pabpn1l6764.865Lepisosteus_oculatus
ENSXCOG00000005158pabpn18294.326ENSLOCG00000000796pabpn15580.921Lepisosteus_oculatus
ENSXCOG00000005158pabpn18981.579ENSLAFG00000031227-9978.947Loxodonta_africana
ENSXCOG00000005158pabpn18473.427ENSMFAG00000031355-9972.028Macaca_fascicularis
ENSXCOG00000005158pabpn18981.579ENSMFAG00000032183BCL2L2-PABPN19769.714Macaca_fascicularis
ENSXCOG00000005158pabpn18981.579ENSMMUG00000014747BCL2L2-PABPN110078.378Macaca_mulatta
ENSXCOG00000005158pabpn18972.185ENSMMUG00000048382-5070.861Macaca_mulatta
ENSXCOG00000005158pabpn18972.185ENSMNEG00000035750-9972.028Macaca_nemestrina
ENSXCOG00000005158pabpn18981.579ENSMNEG00000045065BCL2L2-PABPN16568.927Macaca_nemestrina
ENSXCOG00000005158pabpn18981.579ENSMLEG00000043862BCL2L2-PABPN19769.714Mandrillus_leucophaeus
ENSXCOG00000005158pabpn18970.199ENSMLEG00000034623-9969.930Mandrillus_leucophaeus
ENSXCOG00000005158pabpn19685.465ENSMAMG00000007979pabpn15985.465Mastacembelus_armatus
ENSXCOG00000005158pabpn19184.049ENSMZEG00005011904pabpn15784.049Maylandia_zebra
ENSXCOG00000005158pabpn18980.921ENSMAUG00000007383Gm205215968.362Mesocricetus_auratus
ENSXCOG00000005158pabpn18981.579ENSMICG00000010002BCL2L2-PABPN16568.927Microcebus_murinus
ENSXCOG00000005158pabpn18980.263ENSMOCG00000018557Gm205217976.744Microtus_ochrogaster
ENSXCOG00000005158pabpn19885.714ENSMMOG00000005405pabpn17585.714Mola_mola
ENSXCOG00000005158pabpn18879.866ENSMODG00000004535-5168.387Monodelphis_domestica
ENSXCOG00000005158pabpn19684.884ENSMALG00000019612pabpn15884.884Monopterus_albus
ENSXCOG00000005158pabpn18980.263MGP_CAROLIEiJ_G0019276Gm205215367.797Mus_caroli
ENSXCOG00000005158pabpn18980.263MGP_CAROLIEiJ_G0019277Pabpn19768.571Mus_caroli
ENSXCOG00000005158pabpn18980.921ENSMUSG00000022194Pabpn19769.143Mus_musculus
ENSXCOG00000005158pabpn18980.921ENSMUSG00000092232Gm205215368.362Mus_musculus
ENSXCOG00000005158pabpn18980.921MGP_PahariEiJ_G0030294Gm205215368.362Mus_pahari
ENSXCOG00000005158pabpn18980.921MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSXCOG00000005158pabpn18980.921MGP_SPRETEiJ_G0020165Gm205215368.362Mus_spretus
ENSXCOG00000005158pabpn18980.921MGP_SPRETEiJ_G0020166Pabpn19769.143Mus_spretus
ENSXCOG00000005158pabpn18281.429ENSMPUG00000006775-9069.935Mustela_putorius_furo
ENSXCOG00000005158pabpn19178.571ENSMLUG00000028677-6368.966Myotis_lucifugus
ENSXCOG00000005158pabpn19872.619ENSMLUG00000012452-5769.143Myotis_lucifugus
ENSXCOG00000005158pabpn19872.316ENSMLUG00000003800-9370.056Myotis_lucifugus
ENSXCOG00000005158pabpn18981.579ENSNGAG00000019529Gm205215368.927Nannospalax_galili
ENSXCOG00000005158pabpn19887.209ENSNBRG00000023955pabpn19787.209Neolamprologus_brichardi
ENSXCOG00000005158pabpn19180.519ENSNLEG00000015007-6268.927Nomascus_leucogenys
ENSXCOG00000005158pabpn18470.629ENSNLEG00000030598-6362.275Nomascus_leucogenys
ENSXCOG00000005158pabpn18859.333ENSNLEG00000035292-9958.667Nomascus_leucogenys
ENSXCOG00000005158pabpn18573.611ENSODEG00000003739-5764.072Octodon_degus
ENSXCOG00000005158pabpn18980.921ENSODEG00000002083BCL2L2-PABPN15768.362Octodon_degus
ENSXCOG00000005158pabpn18971.711ENSODEG00000011555-8069.737Octodon_degus
ENSXCOG00000005158pabpn19184.049ENSONIG00000008112pabpn15784.049Oreochromis_niloticus
ENSXCOG00000005158pabpn18783.784ENSOANG00000009218-10079.730Ornithorhynchus_anatinus
ENSXCOG00000005158pabpn18980.921ENSOCUG00000016174PABPN16468.362Oryctolagus_cuniculus
ENSXCOG00000005158pabpn19684.884ENSORLG00000027900pabpn16581.935Oryzias_latipes
ENSXCOG00000005158pabpn19684.884ENSORLG00020004681pabpn15884.884Oryzias_latipes_hni
ENSXCOG00000005158pabpn19885.714ENSORLG00015000018pabpn17585.714Oryzias_latipes_hsok
ENSXCOG00000005158pabpn19185.276ENSOMEG00000016618pabpn16085.185Oryzias_melastigma
ENSXCOG00000005158pabpn18981.579ENSOGAG00000008710PABPN15768.927Otolemur_garnettii
ENSXCOG00000005158pabpn18568.056ENSPPAG00000039421-9659.524Pan_paniscus
ENSXCOG00000005158pabpn18981.579ENSPPAG00000028984BCL2L2-PABPN19069.935Pan_paniscus
ENSXCOG00000005158pabpn18981.579ENSPPRG00000010567PABPN15768.927Panthera_pardus
ENSXCOG00000005158pabpn18981.579ENSPTIG00000001063BCL2L2-PABPN19769.714Panthera_tigris_altaica
ENSXCOG00000005158pabpn18266.429ENSPTRG00000047273-6455.689Pan_troglodytes
ENSXCOG00000005158pabpn18981.579ENSPTRG00000006167BCL2L26568.927Pan_troglodytes
ENSXCOG00000005158pabpn18972.848ENSPANG00000023326-9972.028Papio_anubis
ENSXCOG00000005158pabpn18981.579ENSPANG00000021100BCL2L2-PABPN16568.927Papio_anubis
ENSXCOG00000005158pabpn18995.395ENSPKIG00000008144-5685.625Paramormyrops_kingsleyae
ENSXCOG00000005158pabpn16675.893ENSPKIG00000008340pabpn1l5078.000Paramormyrops_kingsleyae
ENSXCOG00000005158pabpn18992.763ENSPKIG00000018052pabpn17380.233Paramormyrops_kingsleyae
ENSXCOG00000005158pabpn17975.556ENSPSIG00000011959-7785.849Pelodiscus_sinensis
ENSXCOG00000005158pabpn19184.663ENSPMGG00000022027pabpn15984.663Periophthalmus_magnuspinnatus
ENSXCOG00000005158pabpn18980.921ENSPEMG00000008332Gm205217876.744Peromyscus_maniculatus_bairdii
ENSXCOG00000005158pabpn18980.921ENSPCIG00000027751-5768.362Phascolarctos_cinereus
ENSXCOG00000005158pabpn19887.429ENSPFOG00000010351pabpn17487.429Poecilia_formosa
ENSXCOG00000005158pabpn19686.047ENSPLAG00000022696pabpn15986.047Poecilia_latipinna
ENSXCOG00000005158pabpn19887.429ENSPMEG00000020856pabpn17587.429Poecilia_mexicana
ENSXCOG00000005158pabpn19887.429ENSPREG00000011278pabpn17587.429Poecilia_reticulata
ENSXCOG00000005158pabpn18281.429ENSPPYG00000005663PABPN15569.032Pongo_abelii
ENSXCOG00000005158pabpn18981.579ENSPCOG00000028047BCL2L2-PABPN16568.927Propithecus_coquereli
ENSXCOG00000005158pabpn18980.921ENSPVAG00000005270PABPN15767.797Pteropus_vampyrus
ENSXCOG00000005158pabpn19885.143ENSPNYG00000013182pabpn17585.143Pundamilia_nyererei
ENSXCOG00000005158pabpn19886.628ENSPNAG00000023526pabpn17386.628Pygocentrus_nattereri
ENSXCOG00000005158pabpn18765.101ENSPNAG00000021666pabpn1l5081.188Pygocentrus_nattereri
ENSXCOG00000005158pabpn18980.921ENSRNOG00000042195Pabpn15868.362Rattus_norvegicus
ENSXCOG00000005158pabpn18572.917ENSRBIG00000039547-6261.078Rhinopithecus_bieti
ENSXCOG00000005158pabpn19367.485ENSRBIG00000042811-7161.628Rhinopithecus_bieti
ENSXCOG00000005158pabpn18573.611ENSRROG00000040409-6261.677Rhinopithecus_roxellana
ENSXCOG00000005158pabpn18981.579ENSRROG00000045535BCL2L2-PABPN19769.714Rhinopithecus_roxellana
ENSXCOG00000005158pabpn19165.385ENSRROG00000036409-5257.471Rhinopithecus_roxellana
ENSXCOG00000005158pabpn18975.152ENSSBOG00000026930BCL2L2-PABPN19069.935Saimiri_boliviensis_boliviensis
ENSXCOG00000005158pabpn18981.579ENSSHAG00000014841-7969.143Sarcophilus_harrisii
ENSXCOG00000005158pabpn19886.628ENSSFOG00015014718pabpn17386.628Scleropages_formosus
ENSXCOG00000005158pabpn18994.737ENSSFOG00015012565pabpn17783.721Scleropages_formosus
ENSXCOG00000005158pabpn19886.286ENSSMAG00000020157pabpn17586.286Scophthalmus_maximus
ENSXCOG00000005158pabpn19685.465ENSSDUG00000020582pabpn15885.465Seriola_dumerili
ENSXCOG00000005158pabpn19886.286ENSSLDG00000007118pabpn17586.286Seriola_lalandi_dorsalis
ENSXCOG00000005158pabpn18986.184ENSSPUG00000018308-9773.143Sphenodon_punctatus
ENSXCOG00000005158pabpn19884.091ENSSPAG00000021658pabpn17584.091Stegastes_partitus
ENSXCOG00000005158pabpn18981.579ENSSSCG00000002023PABPN15768.927Sus_scrofa
ENSXCOG00000005158pabpn19858.140ENSSSCG00000034805-6458.235Sus_scrofa
ENSXCOG00000005158pabpn19884.571ENSTRUG00000023664pabpn17584.571Takifugu_rubripes
ENSXCOG00000005158pabpn19089.610ENSTNIG00000005369pabpn17082.353Tetraodon_nigroviridis
ENSXCOG00000005158pabpn18981.579ENSUAMG00000024460PABPN15768.927Ursus_americanus
ENSXCOG00000005158pabpn18981.579ENSUMAG00000014288BCL2L2-PABPN15368.927Ursus_maritimus
ENSXCOG00000005158pabpn19180.519ENSVVUG00000019912BCL2L2-PABPN16869.714Vulpes_vulpes
ENSXCOG00000005158pabpn18984.868ENSXETG00000014597pabpn15973.446Xenopus_tropicalis
ENSXCOG00000005158pabpn19888.000ENSXMAG00000006196pabpn17588.000Xiphophorus_maculatus

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