EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000005190 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 10447 bases
Position: chrKQ557204.1:20236732-20247178
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006707	KH_1	PF00013.29	3e-26	1	2
ENSXCOP00000006707	KH_1	PF00013.29	3e-26	2	2
ENSXCOP00000006710	KH_1	PF00013.29	3.5e-26	1	2
ENSXCOP00000006710	KH_1	PF00013.29	3.5e-26	2	2
ENSXCOP00000006713	KH_1	PF00013.29	7e-26	1	2
ENSXCOP00000006713	KH_1	PF00013.29	7e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006792	-	1191	-	ENSXCOP00000006710	396 (aa)	-	-
ENSXCOT00000006795	-	1545	-	ENSXCOP00000006713	514 (aa)	-	-
ENSXCOT00000006789	-	1137	-	ENSXCOP00000006707	378 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005190's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005190's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000005190	-	57	72.558	ENSXCOG00000008198	MEX3D	53	79.104

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005190	-	97	77.251	ENSAPOG00000024248	-	82	73.822	Acanthochromis_polyacanthus
ENSXCOG00000005190	-	85	62.426	ENSAPOG00000006457	mex3b	58	70.543	Acanthochromis_polyacanthus
ENSXCOG00000005190	-	66	68.030	ENSAMEG00000006037	MEX3B	52	69.004	Ailuropoda_melanoleuca
ENSXCOG00000005190	-	66	72.797	ENSACIG00000017783	mex3b	54	70.543	Amphilophus_citrinellus
ENSXCOG00000005190	-	95	67.967	ENSACIG00000005655	-	71	76.129	Amphilophus_citrinellus
ENSXCOG00000005190	-	97	77.488	ENSAOCG00000021347	-	82	74.520	Amphiprion_ocellaris
ENSXCOG00000005190	-	85	62.426	ENSAOCG00000023903	mex3b	55	67.636	Amphiprion_ocellaris
ENSXCOG00000005190	-	97	77.251	ENSAPEG00000003579	-	82	74.346	Amphiprion_percula
ENSXCOG00000005190	-	85	62.426	ENSAPEG00000000263	mex3b	55	67.883	Amphiprion_percula
ENSXCOG00000005190	-	96	72.289	ENSATEG00000015187	-	82	68.651	Anabas_testudineus
ENSXCOG00000005190	-	99	71.480	ENSACLG00000017634	-	82	71.123	Astatotilapia_calliptera
ENSXCOG00000005190	-	52	83.756	ENSCAFG00000013759	MEX3B	55	69.373	Canis_familiaris
ENSXCOG00000005190	-	52	77.725	ENSCPOG00000008241	MEX3B	52	66.316	Cavia_porcellus
ENSXCOG00000005190	-	97	71.259	ENSCSEG00000006809	-	86	66.667	Cynoglossus_semilaevis
ENSXCOG00000005190	-	97	65.063	ENSCSEG00000011533	-	77	63.659	Cynoglossus_semilaevis
ENSXCOG00000005190	-	99	82.664	ENSCVAG00000006043	-	81	82.299	Cyprinodon_variegatus
ENSXCOG00000005190	-	69	71.014	ENSDARG00000058369	mex3b	50	69.928	Danio_rerio
ENSXCOG00000005190	-	85	58.133	ENSEBUG00000007080	mex3b	54	62.925	Eptatretus_burgeri
ENSXCOG00000005190	-	85	60.465	ENSELUG00000002503	mex3b	53	69.663	Esox_lucius
ENSXCOG00000005190	-	66	68.750	ENSFDAG00000018452	MEX3B	66	69.373	Fukomys_damarensis
ENSXCOG00000005190	-	99	80.177	ENSFHEG00000022740	-	82	80.531	Fundulus_heteroclitus
ENSXCOG00000005190	-	92	72.329	ENSGMOG00000005826	-	74	72.603	Gadus_morhua
ENSXCOG00000005190	-	66	72.075	ENSGALG00000032984	MEX3B	50	68.276	Gallus_gallus
ENSXCOG00000005190	-	99	86.679	ENSGAFG00000013694	-	86	86.856	Gambusia_affinis
ENSXCOG00000005190	-	89	77.778	ENSGACG00000007490	-	68	77.778	Gasterosteus_aculeatus
ENSXCOG00000005190	-	99	71.631	ENSHBUG00000010552	-	82	71.277	Haplochromis_burtoni
ENSXCOG00000005190	-	99	68.364	ENSHCOG00000010812	-	81	68.681	Hippocampus_comes
ENSXCOG00000005190	-	68	67.029	ENSHCOG00000007290	mex3b	56	67.491	Hippocampus_comes
ENSXCOG00000005190	-	95	79.442	ENSKMAG00000021181	MEX3B	82	73.843	Kryptolebias_marmoratus
ENSXCOG00000005190	-	99	69.966	ENSLBEG00000007607	-	88	70.648	Labrus_bergylta
ENSXCOG00000005190	-	69	68.953	ENSLBEG00000015131	mex3b	58	64.808	Labrus_bergylta
ENSXCOG00000005190	-	52	83.838	ENSLAFG00000006027	MEX3B	95	83.838	Loxodonta_africana
ENSXCOG00000005190	-	96	74.306	ENSMAMG00000001370	-	83	70.068	Mastacembelus_armatus
ENSXCOG00000005190	-	99	71.480	ENSMZEG00005004908	-	82	71.123	Maylandia_zebra
ENSXCOG00000005190	-	97	72.423	ENSMMOG00000000120	-	75	69.231	Mola_mola
ENSXCOG00000005190	-	95	76.904	ENSMALG00000009589	-	87	73.111	Monopterus_albus
ENSXCOG00000005190	-	92	72.703	ENSNBRG00000012485	-	69	70.324	Neolamprologus_brichardi
ENSXCOG00000005190	-	52	83.756	ENSMEUG00000002402	MEX3B	53	68.132	Notamacropus_eugenii
ENSXCOG00000005190	-	54	80.583	ENSOPRG00000009604	MEX3B	51	68.364	Ochotona_princeps
ENSXCOG00000005190	-	85	62.537	ENSONIG00000003391	mex3b	50	62.329	Oreochromis_niloticus
ENSXCOG00000005190	-	96	76.010	ENSONIG00000015037	-	76	73.077	Oreochromis_niloticus
ENSXCOG00000005190	-	52	73.009	ENSOCUG00000011603	MEX3B	56	60.191	Oryctolagus_cuniculus
ENSXCOG00000005190	-	97	76.010	ENSORLG00000004985	-	82	70.979	Oryzias_latipes
ENSXCOG00000005190	-	97	75.059	ENSORLG00020020174	-	82	72.056	Oryzias_latipes_hni
ENSXCOG00000005190	-	97	75.000	ENSORLG00015008649	-	82	72.408	Oryzias_latipes_hsok
ENSXCOG00000005190	-	96	77.108	ENSOMEG00000023339	-	82	73.063	Oryzias_melastigma
ENSXCOG00000005190	-	66	72.285	ENSPKIG00000018385	mex3b	50	68.327	Paramormyrops_kingsleyae
ENSXCOG00000005190	-	71	69.675	ENSPKIG00000019969	-	59	70.956	Paramormyrops_kingsleyae
ENSXCOG00000005190	-	84	61.062	ENSPMGG00000015808	mex3b	54	67.719	Periophthalmus_magnuspinnatus
ENSXCOG00000005190	-	88	78.338	ENSPMGG00000017559	-	72	72.070	Periophthalmus_magnuspinnatus
ENSXCOG00000005190	-	76	49.051	ENSPMAG00000000125	mex3b	68	45.753	Petromyzon_marinus
ENSXCOG00000005190	-	99	86.631	ENSPFOG00000018999	-	82	87.166	Poecilia_formosa
ENSXCOG00000005190	-	99	86.453	ENSPLAG00000002303	-	82	86.453	Poecilia_latipinna
ENSXCOG00000005190	-	99	86.096	ENSPMEG00000006448	-	82	86.988	Poecilia_mexicana
ENSXCOG00000005190	-	99	85.943	ENSPREG00000018559	-	87	85.765	Poecilia_reticulata
ENSXCOG00000005190	-	66	68.030	ENSPPYG00000006723	-	50	69.004	Pongo_abelii
ENSXCOG00000005190	-	99	71.631	ENSPNYG00000010418	-	82	71.277	Pundamilia_nyererei
ENSXCOG00000005190	-	71	67.254	ENSPNAG00000002109	mex3b	59	69.466	Pygocentrus_nattereri
ENSXCOG00000005190	-	64	67.939	ENSSBOG00000031708	MEX3B	51	68.939	Saimiri_boliviensis_boliviensis
ENSXCOG00000005190	-	66	70.992	ENSSFOG00015016308	mex3b	56	69.847	Scleropages_formosus
ENSXCOG00000005190	-	88	71.646	ENSSMAG00000001075	-	72	71.341	Scophthalmus_maximus
ENSXCOG00000005190	-	94	79.845	ENSSDUG00000022255	-	82	74.390	Seriola_dumerili
ENSXCOG00000005190	-	88	60.795	ENSSDUG00000013254	mex3b	50	68.000	Seriola_dumerili
ENSXCOG00000005190	-	88	60.907	ENSSLDG00000014620	mex3b	50	68.000	Seriola_lalandi_dorsalis
ENSXCOG00000005190	-	96	77.218	ENSSLDG00000024917	-	82	73.356	Seriola_lalandi_dorsalis
ENSXCOG00000005190	-	99	74.144	ENSSPAG00000002581	-	85	74.144	Stegastes_partitus
ENSXCOG00000005190	-	85	62.722	ENSSPAG00000011854	mex3b	55	70.543	Stegastes_partitus
ENSXCOG00000005190	-	66	72.137	ENSTRUG00000000367	mex3b	55	71.756	Takifugu_rubripes
ENSXCOG00000005190	-	97	72.792	ENSTRUG00000011888	-	82	69.489	Takifugu_rubripes
ENSXCOG00000005190	-	84	61.934	ENSTNIG00000003398	mex3b	53	70.956	Tetraodon_nigroviridis
ENSXCOG00000005190	-	66	72.243	ENSXETG00000027601	mex3b	61	63.312	Xenopus_tropicalis
ENSXCOG00000005190	-	99	88.414	ENSXMAG00000015283	-	82	87.701	Xiphophorus_maculatus