EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000005232 (Gene tree)
Gene ID: -
Gene Symbol: smarcad1a
Alias: smarcad1|wu:fi25c01|zgc:113183
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1 a
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 15338 bases
Position: chrKQ557204.1:21015116-21030453
Accession: ZDB-GENE-050522-499
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000006776	ResIII	PF04851.15	2.6e-07	1	1
ENSXCOP00000006778	ResIII	PF04851.15	4.4e-07	1	1
ENSXCOP00000006780	ResIII	PF04851.15	6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000006861	-	2646	-	ENSXCOP00000006778	881 (aa)	-	-
ENSXCOT00000006863	-	2409	-	ENSXCOP00000006780	802 (aa)	-	-
ENSXCOT00000006859	-	2682	-	ENSXCOP00000006776	893 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000005232	smarcad1a	61	30.845	ENSXCOG00000011494	ercc6l	70	30.845
ENSXCOG00000005232	smarcad1a	64	36.822	ENSXCOG00000013840	hells	67	36.514

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005232	smarcad1a	88	57.584	ENSG00000163104	SMARCAD1	99	65.878	Homo_sapiens
ENSXCOG00000005232	smarcad1a	88	83.357	ENSAPOG00000011446	smarcad1a	82	81.560	Acanthochromis_polyacanthus
ENSXCOG00000005232	smarcad1a	88	57.564	ENSAMEG00000005844	SMARCAD1	75	59.407	Ailuropoda_melanoleuca
ENSXCOG00000005232	smarcad1a	87	82.228	ENSACIG00000018326	smarcad1a	94	83.433	Amphilophus_citrinellus
ENSXCOG00000005232	smarcad1a	86	85.185	ENSAOCG00000019762	smarcad1a	74	82.117	Amphiprion_ocellaris
ENSXCOG00000005232	smarcad1a	90	82.634	ENSAPEG00000003889	smarcad1a	75	81.418	Amphiprion_percula
ENSXCOG00000005232	smarcad1a	86	84.163	ENSATEG00000015608	smarcad1a	85	78.796	Anabas_testudineus
ENSXCOG00000005232	smarcad1a	78	65.823	ENSAPLG00000004630	SMARCAD1	79	60.841	Anas_platyrhynchos
ENSXCOG00000005232	smarcad1a	79	64.107	ENSACAG00000013554	SMARCAD1	75	58.442	Anolis_carolinensis
ENSXCOG00000005232	smarcad1a	94	53.801	ENSANAG00000020488	SMARCAD1	86	58.892	Aotus_nancymaae
ENSXCOG00000005232	smarcad1a	88	82.963	ENSACLG00000017063	smarcad1a	82	82.963	Astatotilapia_calliptera
ENSXCOG00000005232	smarcad1a	83	68.991	ENSAMXG00000019130	smarcad1b	84	64.698	Astyanax_mexicanus
ENSXCOG00000005232	smarcad1a	83	68.657	ENSAMXG00000015470	smarcad1a	95	68.429	Astyanax_mexicanus
ENSXCOG00000005232	smarcad1a	88	57.638	ENSBTAG00000017061	SMARCAD1	76	59.512	Bos_taurus
ENSXCOG00000005232	smarcad1a	77	41.627	WBGene00010845	M03C11.8	70	40.057	Caenorhabditis_elegans
ENSXCOG00000005232	smarcad1a	94	53.810	ENSCJAG00000006778	SMARCAD1	76	59.021	Callithrix_jacchus
ENSXCOG00000005232	smarcad1a	94	53.963	ENSCAFG00000010026	SMARCAD1	82	56.153	Canis_familiaris
ENSXCOG00000005232	smarcad1a	88	57.603	ENSCAFG00020003994	SMARCAD1	87	59.536	Canis_lupus_dingo
ENSXCOG00000005232	smarcad1a	88	57.490	ENSCHIG00000012905	SMARCAD1	75	59.536	Capra_hircus
ENSXCOG00000005232	smarcad1a	94	54.162	ENSTSYG00000002706	SMARCAD1	76	59.331	Carlito_syrichta
ENSXCOG00000005232	smarcad1a	89	51.235	ENSCAPG00000016744	SMARCAD1	84	54.150	Cavia_aperea
ENSXCOG00000005232	smarcad1a	88	57.216	ENSCPOG00000011398	SMARCAD1	75	59.407	Cavia_porcellus
ENSXCOG00000005232	smarcad1a	94	53.810	ENSCCAG00000022264	SMARCAD1	99	65.878	Cebus_capucinus
ENSXCOG00000005232	smarcad1a	94	54.142	ENSCATG00000035663	SMARCAD1	89	57.107	Cercocebus_atys
ENSXCOG00000005232	smarcad1a	88	57.474	ENSCSAG00000004186	SMARCAD1	94	57.107	Chlorocebus_sabaeus
ENSXCOG00000005232	smarcad1a	87	61.702	ENSCPBG00000013203	SMARCAD1	75	60.103	Chrysemys_picta_bellii
ENSXCOG00000005232	smarcad1a	78	50.394	ENSCING00000001688	-	98	49.614	Ciona_intestinalis
ENSXCOG00000005232	smarcad1a	94	54.026	ENSCANG00000003556	SMARCAD1	99	65.878	Colobus_angolensis_palliatus
ENSXCOG00000005232	smarcad1a	79	65.258	ENSCGRG00001015056	Smarcad1	76	58.355	Cricetulus_griseus_chok1gshd
ENSXCOG00000005232	smarcad1a	79	65.258	ENSCGRG00000014087	Smarcad1	76	58.355	Cricetulus_griseus_crigri
ENSXCOG00000005232	smarcad1a	85	87.500	ENSCSEG00000017903	smarcad1a	71	88.372	Cynoglossus_semilaevis
ENSXCOG00000005232	smarcad1a	85	87.500	ENSCSEG00000014419	-	91	77.350	Cynoglossus_semilaevis
ENSXCOG00000005232	smarcad1a	78	73.089	ENSDARG00000073721	smarcad1b	80	65.269	Danio_rerio
ENSXCOG00000005232	smarcad1a	98	56.580	ENSDARG00000014041	smarcad1a	99	56.481	Danio_rerio
ENSXCOG00000005232	smarcad1a	88	57.400	ENSDNOG00000000806	-	76	58.763	Dasypus_novemcinctus
ENSXCOG00000005232	smarcad1a	86	58.047	ENSDORG00000012331	Smarcad1	82	56.340	Dipodomys_ordii
ENSXCOG00000005232	smarcad1a	76	45.064	FBgn0032157	Etl1	93	39.242	Drosophila_melanogaster
ENSXCOG00000005232	smarcad1a	78	47.253	ENSEBUG00000003969	smarcad1a	96	47.360	Eptatretus_burgeri
ENSXCOG00000005232	smarcad1a	98	51.856	ENSEASG00005012382	SMARCAD1	98	51.848	Equus_asinus_asinus
ENSXCOG00000005232	smarcad1a	88	57.603	ENSECAG00000011562	SMARCAD1	75	59.331	Equus_caballus
ENSXCOG00000005232	smarcad1a	85	76.982	ENSELUG00000018535	smarcad1a	80	68.627	Esox_lucius
ENSXCOG00000005232	smarcad1a	84	68.768	ENSELUG00000019154	smarcad1b	82	62.733	Esox_lucius
ENSXCOG00000005232	smarcad1a	94	53.927	ENSFCAG00000003958	SMARCAD1	99	66.047	Felis_catus
ENSXCOG00000005232	smarcad1a	87	57.847	ENSFALG00000006089	SMARCAD1	75	60.626	Ficedula_albicollis
ENSXCOG00000005232	smarcad1a	88	57.216	ENSFDAG00000017027	SMARCAD1	76	59.149	Fukomys_damarensis
ENSXCOG00000005232	smarcad1a	87	90.214	ENSFHEG00000012778	smarcad1a	75	88.571	Fundulus_heteroclitus
ENSXCOG00000005232	smarcad1a	89	71.705	ENSGMOG00000018995	smarcad1a	88	76.610	Gadus_morhua
ENSXCOG00000005232	smarcad1a	88	56.443	ENSGALG00000037339	SMARCAD1	93	58.559	Gallus_gallus
ENSXCOG00000005232	smarcad1a	86	97.143	ENSGAFG00000013498	smarcad1a	75	97.143	Gambusia_affinis
ENSXCOG00000005232	smarcad1a	86	78.149	ENSGACG00000007327	smarcad1a	88	78.149	Gasterosteus_aculeatus
ENSXCOG00000005232	smarcad1a	86	61.836	ENSGAGG00000008582	SMARCAD1	75	59.742	Gopherus_agassizii
ENSXCOG00000005232	smarcad1a	88	57.564	ENSGGOG00000023001	SMARCAD1	76	59.021	Gorilla_gorilla
ENSXCOG00000005232	smarcad1a	86	83.359	ENSHBUG00000011042	smarcad1a	79	82.519	Haplochromis_burtoni
ENSXCOG00000005232	smarcad1a	88	57.216	ENSHGLG00000005070	SMARCAD1	75	59.149	Heterocephalus_glaber_female
ENSXCOG00000005232	smarcad1a	88	57.216	ENSHGLG00100006812	SMARCAD1	75	59.149	Heterocephalus_glaber_male
ENSXCOG00000005232	smarcad1a	82	76.339	ENSHCOG00000007848	smarcad1a	68	76.923	Hippocampus_comes
ENSXCOG00000005232	smarcad1a	79	71.429	ENSIPUG00000022817	smarcad1b	83	65.274	Ictalurus_punctatus
ENSXCOG00000005232	smarcad1a	83	67.949	ENSIPUG00000000242	smarcad1a	82	68.895	Ictalurus_punctatus
ENSXCOG00000005232	smarcad1a	88	57.143	ENSSTOG00000001227	SMARCAD1	76	58.945	Ictidomys_tridecemlineatus
ENSXCOG00000005232	smarcad1a	88	56.959	ENSJJAG00000022342	Smarcad1	76	58.634	Jaculus_jaculus
ENSXCOG00000005232	smarcad1a	88	87.307	ENSKMAG00000021351	smarcad1a	77	84.470	Kryptolebias_marmoratus
ENSXCOG00000005232	smarcad1a	92	81.037	ENSLBEG00000008088	smarcad1a	84	78.895	Labrus_bergylta
ENSXCOG00000005232	smarcad1a	98	59.105	ENSLOCG00000012909	smarcad1a	98	59.375	Lepisosteus_oculatus
ENSXCOG00000005232	smarcad1a	88	56.572	ENSLAFG00000000040	SMARCAD1	76	58.376	Loxodonta_africana
ENSXCOG00000005232	smarcad1a	94	54.152	ENSMFAG00000042606	SMARCAD1	89	57.107	Macaca_fascicularis
ENSXCOG00000005232	smarcad1a	94	54.152	ENSMMUG00000022242	SMARCAD1	89	57.107	Macaca_mulatta
ENSXCOG00000005232	smarcad1a	94	54.142	ENSMNEG00000038117	SMARCAD1	99	65.878	Macaca_nemestrina
ENSXCOG00000005232	smarcad1a	94	54.142	ENSMLEG00000038333	SMARCAD1	99	65.878	Mandrillus_leucophaeus
ENSXCOG00000005232	smarcad1a	88	83.115	ENSMAMG00000000933	smarcad1a	80	83.115	Mastacembelus_armatus
ENSXCOG00000005232	smarcad1a	88	82.815	ENSMZEG00005005203	smarcad1a	82	82.815	Maylandia_zebra
ENSXCOG00000005232	smarcad1a	88	54.765	ENSMGAG00000005577	SMARCAD1	80	56.394	Meleagris_gallopavo
ENSXCOG00000005232	smarcad1a	79	65.062	ENSMAUG00000008417	Smarcad1	76	58.892	Mesocricetus_auratus
ENSXCOG00000005232	smarcad1a	87	58.052	ENSMICG00000009746	SMARCAD1	76	59.640	Microcebus_murinus
ENSXCOG00000005232	smarcad1a	88	56.903	ENSMOCG00000017142	Smarcad1	74	59.025	Microtus_ochrogaster
ENSXCOG00000005232	smarcad1a	86	83.158	ENSMMOG00000000275	smarcad1a	98	77.635	Mola_mola
ENSXCOG00000005232	smarcad1a	79	65.571	ENSMODG00000019268	SMARCAD1	75	58.420	Monodelphis_domestica
ENSXCOG00000005232	smarcad1a	90	56.061	MGP_CAROLIEiJ_G0028458	-	62	58.710	Mus_caroli
ENSXCOG00000005232	smarcad1a	90	56.061	ENSMUSG00000029920	Smarcad1	76	57.935	Mus_musculus
ENSXCOG00000005232	smarcad1a	94	53.357	MGP_PahariEiJ_G0022198	Smarcad1	83	53.357	Mus_pahari
ENSXCOG00000005232	smarcad1a	90	56.061	MGP_SPRETEiJ_G0029462	Smarcad1	76	57.935	Mus_spretus
ENSXCOG00000005232	smarcad1a	88	57.564	ENSMPUG00000002111	SMARCAD1	75	59.407	Mustela_putorius_furo
ENSXCOG00000005232	smarcad1a	88	57.455	ENSMLUG00000000425	SMARCAD1	76	59.184	Myotis_lucifugus
ENSXCOG00000005232	smarcad1a	88	56.830	ENSNGAG00000000810	Smarcad1	77	58.687	Nannospalax_galili
ENSXCOG00000005232	smarcad1a	85	81.487	ENSNBRG00000012749	smarcad1a	98	70.878	Neolamprologus_brichardi
ENSXCOG00000005232	smarcad1a	88	57.564	ENSNLEG00000014225	SMARCAD1	99	65.878	Nomascus_leucogenys
ENSXCOG00000005232	smarcad1a	88	56.959	ENSODEG00000004334	SMARCAD1	75	59.021	Octodon_degus
ENSXCOG00000005232	smarcad1a	76	84.790	ENSONIG00000015059	smarcad1a	80	75.813	Oreochromis_niloticus
ENSXCOG00000005232	smarcad1a	79	65.991	ENSOANG00000013764	SMARCAD1	93	59.948	Ornithorhynchus_anatinus
ENSXCOG00000005232	smarcad1a	84	62.372	ENSOCUG00000017283	SMARCAD1	76	59.021	Oryctolagus_cuniculus
ENSXCOG00000005232	smarcad1a	88	80.059	ENSORLG00000004869	smarcad1a	82	79.281	Oryzias_latipes
ENSXCOG00000005232	smarcad1a	88	79.912	ENSORLG00020020569	smarcad1a	82	78.993	Oryzias_latipes_hni
ENSXCOG00000005232	smarcad1a	89	79.765	ENSORLG00015009045	smarcad1a	82	78.849	Oryzias_latipes_hsok
ENSXCOG00000005232	smarcad1a	86	80.572	ENSOMEG00000023032	smarcad1a	67	80.723	Oryzias_melastigma
ENSXCOG00000005232	smarcad1a	88	57.069	ENSOGAG00000011444	SMARCAD1	75	58.915	Otolemur_garnettii
ENSXCOG00000005232	smarcad1a	88	57.490	ENSOARG00000017851	SMARCAD1	75	59.536	Ovis_aries
ENSXCOG00000005232	smarcad1a	88	57.564	ENSPPAG00000035715	SMARCAD1	76	59.021	Pan_paniscus
ENSXCOG00000005232	smarcad1a	94	53.927	ENSPPRG00000024756	SMARCAD1	99	66.047	Panthera_pardus
ENSXCOG00000005232	smarcad1a	94	54.035	ENSPTIG00000017868	SMARCAD1	76	59.383	Panthera_tigris_altaica
ENSXCOG00000005232	smarcad1a	88	57.564	ENSPTRG00000023126	SMARCAD1	99	65.878	Pan_troglodytes
ENSXCOG00000005232	smarcad1a	94	53.023	ENSPANG00000019757	SMARCAD1	82	54.949	Papio_anubis
ENSXCOG00000005232	smarcad1a	86	62.606	ENSPSIG00000010255	SMARCAD1	76	59.772	Pelodiscus_sinensis
ENSXCOG00000005232	smarcad1a	77	77.581	ENSPMGG00000010735	smarcad1a	96	74.227	Periophthalmus_magnuspinnatus
ENSXCOG00000005232	smarcad1a	84	55.117	ENSPEMG00000001854	Smarcad1	98	44.547	Peromyscus_maniculatus_bairdii
ENSXCOG00000005232	smarcad1a	83	55.780	ENSPMAG00000003516	smarcad1a	82	50.841	Petromyzon_marinus
ENSXCOG00000005232	smarcad1a	93	55.678	ENSPCIG00000008137	SMARCAD1	98	59.478	Phascolarctos_cinereus
ENSXCOG00000005232	smarcad1a	98	96.884	ENSPFOG00000019116	smarcad1a	89	96.237	Poecilia_formosa
ENSXCOG00000005232	smarcad1a	88	100.000	ENSPLAG00000000108	smarcad1a	75	100.000	Poecilia_latipinna
ENSXCOG00000005232	smarcad1a	98	96.884	ENSPMEG00000009155	smarcad1a	89	96.237	Poecilia_mexicana
ENSXCOG00000005232	smarcad1a	88	97.173	ENSPREG00000018185	smarcad1a	80	95.936	Poecilia_reticulata
ENSXCOG00000005232	smarcad1a	88	57.417	ENSPPYG00000014935	SMARCAD1	76	58.869	Pongo_abelii
ENSXCOG00000005232	smarcad1a	87	49.377	ENSPCOG00000020478	SMARCAD1	91	49.377	Propithecus_coquereli
ENSXCOG00000005232	smarcad1a	94	53.638	ENSPVAG00000001760	SMARCAD1	75	59.097	Pteropus_vampyrus
ENSXCOG00000005232	smarcad1a	85	80.758	ENSPNYG00000010087	smarcad1a	98	70.517	Pundamilia_nyererei
ENSXCOG00000005232	smarcad1a	87	66.761	ENSPNAG00000010099	smarcad1b	83	65.296	Pygocentrus_nattereri
ENSXCOG00000005232	smarcad1a	84	70.326	ENSPNAG00000001663	smarcad1a	98	56.050	Pygocentrus_nattereri
ENSXCOG00000005232	smarcad1a	90	56.439	ENSRNOG00000006391	Smarcad1	76	58.839	Rattus_norvegicus
ENSXCOG00000005232	smarcad1a	88	57.564	ENSRBIG00000041989	SMARCAD1	76	59.021	Rhinopithecus_bieti
ENSXCOG00000005232	smarcad1a	88	57.564	ENSRROG00000035309	SMARCAD1	76	59.021	Rhinopithecus_roxellana
ENSXCOG00000005232	smarcad1a	94	53.810	ENSSBOG00000032114	SMARCAD1	99	65.878	Saimiri_boliviensis_boliviensis
ENSXCOG00000005232	smarcad1a	91	56.500	ENSSHAG00000001279	SMARCAD1	76	58.440	Sarcophilus_harrisii
ENSXCOG00000005232	smarcad1a	82	73.906	ENSSFOG00015016814	smarcad1b	79	66.167	Scleropages_formosus
ENSXCOG00000005232	smarcad1a	83	70.475	ENSSFOG00015020909	smarcad1a	98	67.300	Scleropages_formosus
ENSXCOG00000005232	smarcad1a	85	91.667	ENSSMAG00000001326	smarcad1a	64	91.667	Scophthalmus_maximus
ENSXCOG00000005232	smarcad1a	82	83.283	ENSSDUG00000022338	smarcad1a	82	82.438	Seriola_dumerili
ENSXCOG00000005232	smarcad1a	85	86.047	ENSSLDG00000024986	smarcad1a	79	81.412	Seriola_lalandi_dorsalis
ENSXCOG00000005232	smarcad1a	73	65.767	ENSSPUG00000004633	SMARCAD1	99	65.767	Sphenodon_punctatus
ENSXCOG00000005232	smarcad1a	87	84.296	ENSSPAG00000001970	smarcad1a	98	81.702	Stegastes_partitus
ENSXCOG00000005232	smarcad1a	88	57.732	ENSSSCG00000009193	SMARCAD1	92	59.459	Sus_scrofa
ENSXCOG00000005232	smarcad1a	77	66.184	ENSTGUG00000003127	SMARCAD1	98	59.583	Taeniopygia_guttata
ENSXCOG00000005232	smarcad1a	84	77.910	ENSTNIG00000017585	smarcad1a	87	78.129	Tetraodon_nigroviridis
ENSXCOG00000005232	smarcad1a	73	69.897	ENSTBEG00000002789	SMARCAD1	66	69.897	Tupaia_belangeri
ENSXCOG00000005232	smarcad1a	88	57.658	ENSTTRG00000000226	SMARCAD1	78	59.459	Tursiops_truncatus
ENSXCOG00000005232	smarcad1a	98	51.505	ENSUAMG00000022262	SMARCAD1	99	51.116	Ursus_americanus
ENSXCOG00000005232	smarcad1a	88	57.564	ENSUMAG00000004549	SMARCAD1	76	59.407	Ursus_maritimus
ENSXCOG00000005232	smarcad1a	98	52.189	ENSVVUG00000007271	SMARCAD1	94	59.331	Vulpes_vulpes
ENSXCOG00000005232	smarcad1a	84	57.353	ENSXETG00000019214	smarcad1	87	53.595	Xenopus_tropicalis
ENSXCOG00000005232	smarcad1a	88	100.000	ENSXMAG00000015350	smarcad1a	76	100.000	Xiphophorus_maculatus