EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000005459 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
8866 bases
Position
chrKQ557201.1:18062111-18070976
Accession
ZDB-GENE-030131-5836
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000007069PABPPF00658.181.4e-2811
ENSXCOP00000007071PABPPF00658.181.8e-2811
ENSXCOP00000007069RRM_5PF13893.61.8e-1013
ENSXCOP00000007069RRM_5PF13893.61.8e-1023
ENSXCOP00000007069RRM_5PF13893.61.8e-1033
ENSXCOP00000007071RRM_5PF13893.62.9e-1013
ENSXCOP00000007071RRM_5PF13893.62.9e-1023
ENSXCOP00000007071RRM_5PF13893.62.9e-1033
ENSXCOP00000007071RRM_1PF00076.222.6e-8914
ENSXCOP00000007071RRM_1PF00076.222.6e-8924
ENSXCOP00000007071RRM_1PF00076.222.6e-8934
ENSXCOP00000007071RRM_1PF00076.222.6e-8944
ENSXCOP00000007069RRM_1PF00076.228.8e-8314
ENSXCOP00000007069RRM_1PF00076.228.8e-8324
ENSXCOP00000007069RRM_1PF00076.228.8e-8334
ENSXCOP00000007069RRM_1PF00076.228.8e-8344
ENSXCOP00000007072RRM_1PF00076.223e-2812
ENSXCOP00000007072RRM_1PF00076.223e-2822
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000007159-1839-ENSXCOP00000007071612 (aa)--
ENSXCOT00000007157-1539-ENSXCOP00000007069512 (aa)--
ENSXCOT00000007160-429-ENSXCOP00000007072142 (aa)--
Gene Model
Click here to download ENSXCOG00000005459's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005459's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000005459pabpc1l9580.000ENSXCOG00000013190pabpc49677.830
ENSXCOG00000005459pabpc1l5734.247ENSXCOG00000019737celf3a6434.247
ENSXCOG00000005459pabpc1l6930.622ENSXCOG00000002464ELAVL29030.622
ENSXCOG00000005459pabpc1l5235.135ENSXCOG00000008262cirbpa9640.845
ENSXCOG00000005459pabpc1l9983.688ENSXCOG00000019901pabpc1b9869.677
ENSXCOG00000005459pabpc1l6635.897ENSXCOG00000008068-9035.897
ENSXCOG00000005459pabpc1l9531.765ENSXCOG00000006063tial17631.765
ENSXCOG00000005459pabpc1l5234.667ENSXCOG00000016995rbm196734.667
ENSXCOG00000005459pabpc1l6730.667ENSXCOG00000008899-9030.952
ENSXCOG00000005459pabpc1l9984.397ENSXCOG00000017066pabpc1a9869.805
ENSXCOG00000005459pabpc1l6030.075ENSXCOG00000003524ncl8230.075
ENSXCOG00000005459pabpc1l6637.079ENSXCOG00000014236elavl1a9437.079
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000005459pabpc1l9982.270ENSG00000101104PABPC1L9882.270Homo_sapiens
ENSXCOG00000005459pabpc1l9990.780ENSAPOG00000010842pabpc1l9981.583Acanthochromis_polyacanthus
ENSXCOG00000005459pabpc1l9983.688ENSAMEG00000004099PABPC1L10064.961Ailuropoda_melanoleuca
ENSXCOG00000005459pabpc1l9993.617ENSACIG00000021004-10090.398Amphilophus_citrinellus
ENSXCOG00000005459pabpc1l9991.489ENSAOCG00000006167-10083.227Amphiprion_ocellaris
ENSXCOG00000005459pabpc1l9991.489ENSAPEG00000010558-9989.450Amphiprion_percula
ENSXCOG00000005459pabpc1l9993.617ENSATEG00000007428pabpc1l9892.823Anabas_testudineus
ENSXCOG00000005459pabpc1l9584.848ENSAPLG00000008415PABPC1L9977.251Anas_platyrhynchos
ENSXCOG00000005459pabpc1l9987.234ENSACAG00000011841PABPC1L9973.851Anolis_carolinensis
ENSXCOG00000005459pabpc1l9981.560ENSANAG00000026826PABPC1L9969.231Aotus_nancymaae
ENSXCOG00000005459pabpc1l9993.617ENSACLG00000024791pabpc1l10087.380Astatotilapia_calliptera
ENSXCOG00000005459pabpc1l9992.199ENSAMXG00000013552pabpc1l9882.464Astyanax_mexicanus
ENSXCOG00000005459pabpc1l9984.397ENSBTAG00000055300-10087.500Bos_taurus
ENSXCOG00000005459pabpc1l8061.957ENSBTAG00000016849PABPC1L8265.185Bos_taurus
ENSXCOG00000005459pabpc1l9981.560ENSCJAG00000017628PABPC1L9771.529Callithrix_jacchus
ENSXCOG00000005459pabpc1l9974.306ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSXCOG00000005459pabpc1l9983.688ENSCAFG00000009573PABPC1L10063.833Canis_familiaris
ENSXCOG00000005459pabpc1l9983.688ENSCAFG00020013828PABPC1L9969.707Canis_lupus_dingo
ENSXCOG00000005459pabpc1l9984.397ENSCHIG00000025759PABPC1L9168.309Capra_hircus
ENSXCOG00000005459pabpc1l9982.270ENSTSYG00000006645PABPC1L9968.740Carlito_syrichta
ENSXCOG00000005459pabpc1l9576.056ENSCAPG00000014519PABPC1L9963.653Cavia_aperea
ENSXCOG00000005459pabpc1l9978.723ENSCPOG00000013633PABPC1L9966.287Cavia_porcellus
ENSXCOG00000005459pabpc1l9980.851ENSCCAG00000023338PABPC1L9969.394Cebus_capucinus
ENSXCOG00000005459pabpc1l9982.270ENSCATG00000034065PABPC1L9970.049Cercocebus_atys
ENSXCOG00000005459pabpc1l9977.305ENSCLAG00000005298PABPC1L9964.115Chinchilla_lanigera
ENSXCOG00000005459pabpc1l9982.270ENSCSAG00000014242PABPC1L9970.049Chlorocebus_sabaeus
ENSXCOG00000005459pabpc1l9986.525ENSCPBG00000017755-9980.045Chrysemys_picta_bellii
ENSXCOG00000005459pabpc1l6784.733ENSCPBG00000007810-9184.733Chrysemys_picta_bellii
ENSXCOG00000005459pabpc1l8466.327ENSCING00000002796-9749.900Ciona_intestinalis
ENSXCOG00000005459pabpc1l9983.217ENSCSAVG00000004246-9072.185Ciona_savignyi
ENSXCOG00000005459pabpc1l9981.818ENSCSAVG00000003102-10083.893Ciona_savignyi
ENSXCOG00000005459pabpc1l9982.270ENSCANG00000037530PABPC1L9966.400Colobus_angolensis_palliatus
ENSXCOG00000005459pabpc1l9975.177ENSCGRG00001021938Pabpc1l9964.537Cricetulus_griseus_chok1gshd
ENSXCOG00000005459pabpc1l9975.177ENSCGRG00000007946Pabpc1l9964.537Cricetulus_griseus_crigri
ENSXCOG00000005459pabpc1l9889.928ENSCSEG00000021295pabpc1l9979.851Cynoglossus_semilaevis
ENSXCOG00000005459pabpc1l9997.872ENSCVAG00000015943-9997.710Cyprinodon_variegatus
ENSXCOG00000005459pabpc1l9990.780ENSDARG00000002597pabpc1l9392.701Danio_rerio
ENSXCOG00000005459pabpc1l9982.979ENSDNOG00000048450PABPC1L9871.659Dasypus_novemcinctus
ENSXCOG00000005459pabpc1l9979.433ENSDORG00000001067Pabpc1l9870.047Dipodomys_ordii
ENSXCOG00000005459pabpc1l9982.979ENSETEG00000009969PABPC1L7276.829Echinops_telfairi
ENSXCOG00000005459pabpc1l7062.687ENSEASG00005023407-8162.687Equus_asinus_asinus
ENSXCOG00000005459pabpc1l9982.979ENSEASG00005023408-10085.119Equus_asinus_asinus
ENSXCOG00000005459pabpc1l8065.517ENSECAG00000040139-8863.525Equus_caballus
ENSXCOG00000005459pabpc1l9981.560ENSEEUG00000005978PABPC1L9965.811Erinaceus_europaeus
ENSXCOG00000005459pabpc1l9990.780ENSELUG00000001811pabpc1l9883.810Esox_lucius
ENSXCOG00000005459pabpc1l9983.688ENSFCAG00000011692PABPC1L9971.663Felis_catus
ENSXCOG00000005459pabpc1l9985.106ENSFALG00000005372PABPC1L8773.321Ficedula_albicollis
ENSXCOG00000005459pabpc1l9978.723ENSFDAG00000008291PABPC1L9965.850Fukomys_damarensis
ENSXCOG00000005459pabpc1l10093.215ENSFHEG00000003398pabpc1l10092.846Fundulus_heteroclitus
ENSXCOG00000005459pabpc1l9989.362ENSGMOG00000004437pabpc1l9886.842Gadus_morhua
ENSXCOG00000005459pabpc1l9984.397ENSGALG00000004123PABPC1L9980.048Gallus_gallus
ENSXCOG00000005459pabpc1l9994.326ENSGAFG00000021057pabpc1l10092.627Gambusia_affinis
ENSXCOG00000005459pabpc1l9993.617ENSGACG00000002792pabpc1l9991.346Gasterosteus_aculeatus
ENSXCOG00000005459pabpc1l9986.525ENSGAGG00000000589PABPC1L9876.430Gopherus_agassizii
ENSXCOG00000005459pabpc1l9982.270ENSGGOG00000004584PABPC1L9970.049Gorilla_gorilla
ENSXCOG00000005459pabpc1l9993.617ENSHBUG00000006134pabpc1l10087.220Haplochromis_burtoni
ENSXCOG00000005459pabpc1l9978.723ENSHGLG00000008434PABPC1L9969.811Heterocephalus_glaber_female
ENSXCOG00000005459pabpc1l9981.560ENSHGLG00100019506-10086.517Heterocephalus_glaber_male
ENSXCOG00000005459pabpc1l9978.723ENSHGLG00100012151PABPC1L9969.811Heterocephalus_glaber_male
ENSXCOG00000005459pabpc1l9991.489ENSHCOG00000009270pabpc1l9988.517Hippocampus_comes
ENSXCOG00000005459pabpc1l9258.779ENSIPUG00000006780-9257.955Ictalurus_punctatus
ENSXCOG00000005459pabpc1l9991.489ENSIPUG00000012602pabpc1l9882.857Ictalurus_punctatus
ENSXCOG00000005459pabpc1l9259.231ENSIPUG00000005537-10059.231Ictalurus_punctatus
ENSXCOG00000005459pabpc1l9258.779ENSIPUG00000006760-8862.644Ictalurus_punctatus
ENSXCOG00000005459pabpc1l9980.142ENSSTOG00000003739PABPC1L9967.794Ictidomys_tridecemlineatus
ENSXCOG00000005459pabpc1l9952.575ENSJJAG00000022406Pabpc1l9953.865Jaculus_jaculus
ENSXCOG00000005459pabpc1l9992.908ENSKMAG00000016847pabpc1l10088.548Kryptolebias_marmoratus
ENSXCOG00000005459pabpc1l9992.199ENSLBEG00000010084pabpc1l9890.670Labrus_bergylta
ENSXCOG00000005459pabpc1l9986.525ENSLACG00000005762PABPC1L9778.588Latimeria_chalumnae
ENSXCOG00000005459pabpc1l9993.617ENSLOCG00000007519pabpc1l9982.339Lepisosteus_oculatus
ENSXCOG00000005459pabpc1l9982.270ENSLAFG00000003553PABPC1L9971.724Loxodonta_africana
ENSXCOG00000005459pabpc1l9982.270ENSMFAG00000040365PABPC1L9970.376Macaca_fascicularis
ENSXCOG00000005459pabpc1l9982.270ENSMNEG00000032298PABPC1L9772.706Macaca_nemestrina
ENSXCOG00000005459pabpc1l9982.270ENSMLEG00000043139PABPC1L9970.049Mandrillus_leucophaeus
ENSXCOG00000005459pabpc1l9990.780ENSMAMG00000011854pabpc1l9791.866Mastacembelus_armatus
ENSXCOG00000005459pabpc1l9993.617ENSMZEG00005023713pabpc1l10087.380Maylandia_zebra
ENSXCOG00000005459pabpc1l9984.397ENSMGAG00000003674PABPC1L9777.698Meleagris_gallopavo
ENSXCOG00000005459pabpc1l9975.177ENSMOCG00000013186Pabpc1l9965.741Microtus_ochrogaster
ENSXCOG00000005459pabpc1l9992.199ENSMMOG00000020574-9096.923Mola_mola
ENSXCOG00000005459pabpc1l9985.106ENSMODG00000016198PABPC1L9970.936Monodelphis_domestica
ENSXCOG00000005459pabpc1l9990.780ENSMALG00000021622pabpc1l9989.952Monopterus_albus
ENSXCOG00000005459pabpc1l9974.468MGP_CAROLIEiJ_G0024627Pabpc1l9961.812Mus_caroli
ENSXCOG00000005459pabpc1l9974.468ENSMUSG00000054582Pabpc1l9961.812Mus_musculus
ENSXCOG00000005459pabpc1l9974.468MGP_PahariEiJ_G0026071Pabpc1l10062.097Mus_pahari
ENSXCOG00000005459pabpc1l9974.468MGP_SPRETEiJ_G0025549Pabpc1l9961.812Mus_spretus
ENSXCOG00000005459pabpc1l9983.688ENSMPUG00000017646PABPC1L9972.365Mustela_putorius_furo
ENSXCOG00000005459pabpc1l9982.979ENSMLUG00000006324PABPC1L9867.097Myotis_lucifugus
ENSXCOG00000005459pabpc1l9976.596ENSNGAG00000010458Pabpc1l9969.565Nannospalax_galili
ENSXCOG00000005459pabpc1l9993.617ENSNBRG00000016633pabpc1l9993.253Neolamprologus_brichardi
ENSXCOG00000005459pabpc1l9984.397ENSMEUG00000007905-8965.880Notamacropus_eugenii
ENSXCOG00000005459pabpc1l9981.560ENSOPRG00000011846PABPC1L9872.143Ochotona_princeps
ENSXCOG00000005459pabpc1l9975.177ENSODEG00000002920-9780.625Octodon_degus
ENSXCOG00000005459pabpc1l9979.433ENSODEG00000015482PABPC1L9862.804Octodon_degus
ENSXCOG00000005459pabpc1l9993.617ENSONIG00000017314pabpc1l10087.220Oreochromis_niloticus
ENSXCOG00000005459pabpc1l9982.270ENSOANG00000015793-10062.590Ornithorhynchus_anatinus
ENSXCOG00000005459pabpc1l9981.560ENSOCUG00000003005PABPC1L9964.985Oryctolagus_cuniculus
ENSXCOG00000005459pabpc1l9990.071ENSORLG00000010322pabpc1l10089.486Oryzias_latipes
ENSXCOG00000005459pabpc1l9990.071ENSORLG00020021193pabpc1l10089.486Oryzias_latipes_hni
ENSXCOG00000005459pabpc1l9990.071ENSORLG00015017018pabpc1l10089.486Oryzias_latipes_hsok
ENSXCOG00000005459pabpc1l9990.780ENSOMEG00000010789pabpc1l10082.595Oryzias_melastigma
ENSXCOG00000005459pabpc1l9980.142ENSOGAG00000032999PABPC1L9967.624Otolemur_garnettii
ENSXCOG00000005459pabpc1l9983.688ENSOARG00000004578PABPC1L9873.976Ovis_aries
ENSXCOG00000005459pabpc1l9982.270ENSPPAG00000039677PABPC1L9772.706Pan_paniscus
ENSXCOG00000005459pabpc1l9983.688ENSPPRG00000019327-9867.593Panthera_pardus
ENSXCOG00000005459pabpc1l9583.704ENSPTIG00000006524PABPC1L9971.663Panthera_tigris_altaica
ENSXCOG00000005459pabpc1l9982.270ENSPTRG00000013531PABPC1L9882.270Pan_troglodytes
ENSXCOG00000005459pabpc1l9982.270ENSPANG00000018788PABPC1L9970.049Papio_anubis
ENSXCOG00000005459pabpc1l9980.851ENSPKIG00000016810-9980.851Paramormyrops_kingsleyae
ENSXCOG00000005459pabpc1l6367.778ENSPKIG00000016801-10067.778Paramormyrops_kingsleyae
ENSXCOG00000005459pabpc1l9989.362ENSPKIG00000007322pabpc1l10077.564Paramormyrops_kingsleyae
ENSXCOG00000005459pabpc1l9986.525ENSPSIG00000013289PABPC1L9982.014Pelodiscus_sinensis
ENSXCOG00000005459pabpc1l7183.077ENSPMGG00000023121-9183.077Periophthalmus_magnuspinnatus
ENSXCOG00000005459pabpc1l9992.908ENSPMGG00000023117pabpc1l9794.884Periophthalmus_magnuspinnatus
ENSXCOG00000005459pabpc1l9974.468ENSPEMG00000020671Pabpc1l9960.417Peromyscus_maniculatus_bairdii
ENSXCOG00000005459pabpc1l10097.712ENSPFOG00000013241pabpc1l10097.254Poecilia_formosa
ENSXCOG00000005459pabpc1l9299.231ENSPLAG00000023686-9299.231Poecilia_latipinna
ENSXCOG00000005459pabpc1l10096.931ENSPLAG00000017490-10096.931Poecilia_latipinna
ENSXCOG00000005459pabpc1l10096.607ENSPMEG00000007677pabpc1l10096.607Poecilia_mexicana
ENSXCOG00000005459pabpc1l9299.231ENSPMEG00000009185-8899.231Poecilia_mexicana
ENSXCOG00000005459pabpc1l9994.326ENSPREG00000015886pabpc1l9998.054Poecilia_reticulata
ENSXCOG00000005459pabpc1l9982.270ENSPPYG00000011042PABPC1L9772.471Pongo_abelii
ENSXCOG00000005459pabpc1l6884.615ENSPCAG00000011787-7585.938Procavia_capensis
ENSXCOG00000005459pabpc1l9980.142ENSPCOG00000020630PABPC1L9971.729Propithecus_coquereli
ENSXCOG00000005459pabpc1l9983.688ENSPVAG00000012663PABPC1L9871.496Pteropus_vampyrus
ENSXCOG00000005459pabpc1l9993.617ENSPNYG00000004101pabpc1l9993.494Pundamilia_nyererei
ENSXCOG00000005459pabpc1l9992.199ENSPNAG00000021248pabpc1l10073.046Pygocentrus_nattereri
ENSXCOG00000005459pabpc1l9973.759ENSRNOG00000012750Pabpc1l9961.821Rattus_norvegicus
ENSXCOG00000005459pabpc1l9981.560ENSRBIG00000035381PABPC1L9772.471Rhinopithecus_bieti
ENSXCOG00000005459pabpc1l9981.560ENSRROG00000044498PABPC1L9772.235Rhinopithecus_roxellana
ENSXCOG00000005459pabpc1l9981.560ENSSBOG00000009532-9969.067Saimiri_boliviensis_boliviensis
ENSXCOG00000005459pabpc1l9770.701ENSSHAG00000011446PABPC1L10070.701Sarcophilus_harrisii
ENSXCOG00000005459pabpc1l9992.199ENSSFOG00015017304pabpc1l10079.040Scleropages_formosus
ENSXCOG00000005459pabpc1l9995.035ENSSMAG00000010516pabpc1l9899.225Scophthalmus_maximus
ENSXCOG00000005459pabpc1l9993.617ENSSDUG00000014743pabpc1l9991.827Seriola_dumerili
ENSXCOG00000005459pabpc1l9993.617ENSSLDG00000006981pabpc1l9892.694Seriola_lalandi_dorsalis
ENSXCOG00000005459pabpc1l9987.234ENSSPUG00000004233PABPC1L9971.905Sphenodon_punctatus
ENSXCOG00000005459pabpc1l9991.489ENSSPAG00000017137pabpc1l9882.987Stegastes_partitus
ENSXCOG00000005459pabpc1l9983.688ENSSSCG00000007382PABPC1L9967.799Sus_scrofa
ENSXCOG00000005459pabpc1l9986.525ENSTGUG00000005114PABPC1L9875.115Taeniopygia_guttata
ENSXCOG00000005459pabpc1l9994.326ENSTRUG00000011085pabpc1l9688.626Takifugu_rubripes
ENSXCOG00000005459pabpc1l9984.507ENSTNIG00000017903pabpc1l9881.804Tetraodon_nigroviridis
ENSXCOG00000005459pabpc1l9983.688ENSTBEG00000002851PABPC1L7976.712Tupaia_belangeri
ENSXCOG00000005459pabpc1l9984.397ENSTTRG00000007618PABPC1L10067.057Tursiops_truncatus
ENSXCOG00000005459pabpc1l9983.688ENSUAMG00000017682PABPC1L9967.205Ursus_americanus
ENSXCOG00000005459pabpc1l9574.699ENSUMAG00000025436PABPC1L9273.538Ursus_maritimus
ENSXCOG00000005459pabpc1l9989.231ENSVVUG00000018939PABPC1L9974.704Vulpes_vulpes
ENSXCOG00000005459pabpc1l9986.525ENSXETG00000022831pabpc1l9969.108Xenopus_tropicalis
ENSXCOG00000005459pabpc1l10098.869ENSXMAG00000017135pabpc1l10098.869Xiphophorus_maculatus

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