EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000005500 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 16700 bases
Position: chrKQ557210.1:25559365-25576064
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007121	Npa1	PF11707.8	2.9e-80	1	1
ENSXCOP00000007120	Npa1	PF11707.8	1.9e-74	1	1
ENSXCOP00000007122	Npa1	PF11707.8	2.1e-53	1	2
ENSXCOP00000007122	Npa1	PF11707.8	2.1e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000007211	-	6180	-	ENSXCOP00000007120	2059 (aa)	-	-
ENSXCOT00000007212	-	6369	-	ENSXCOP00000007121	2122 (aa)	-	-
ENSXCOT00000007213	-	6213	-	ENSXCOP00000007122	2070 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005500's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005500's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005500	urb1	98	41.019	ENSG00000142207	URB1	99	40.731	Homo_sapiens
ENSXCOG00000005500	urb1	97	71.720	ENSAPOG00000020308	urb1	99	71.563	Acanthochromis_polyacanthus
ENSXCOG00000005500	urb1	97	45.947	ENSAMEG00000011998	URB1	99	41.553	Ailuropoda_melanoleuca
ENSXCOG00000005500	urb1	96	67.678	ENSACIG00000003248	urb1	97	64.190	Amphilophus_citrinellus
ENSXCOG00000005500	urb1	100	65.759	ENSAOCG00000010364	urb1	100	65.667	Amphiprion_ocellaris
ENSXCOG00000005500	urb1	100	64.939	ENSAPEG00000010758	urb1	100	64.849	Amphiprion_percula
ENSXCOG00000005500	urb1	100	65.233	ENSATEG00000011790	urb1	100	65.233	Anabas_testudineus
ENSXCOG00000005500	urb1	96	47.441	ENSAPLG00000012791	URB1	99	42.915	Anas_platyrhynchos
ENSXCOG00000005500	urb1	99	48.454	ENSACAG00000002817	URB1	97	49.485	Anolis_carolinensis
ENSXCOG00000005500	urb1	99	41.369	ENSANAG00000024617	URB1	99	41.293	Aotus_nancymaae
ENSXCOG00000005500	urb1	98	68.366	ENSACLG00000024865	urb1	100	65.546	Astatotilapia_calliptera
ENSXCOG00000005500	urb1	99	59.184	ENSAMXG00000012306	urb1	97	59.184	Astyanax_mexicanus
ENSXCOG00000005500	urb1	98	41.237	ENSBTAG00000012412	URB1	98	41.370	Bos_taurus
ENSXCOG00000005500	urb1	99	40.688	ENSCJAG00000009118	URB1	99	40.641	Callithrix_jacchus
ENSXCOG00000005500	urb1	98	45.618	ENSCAFG00000008892	URB1	99	41.197	Canis_familiaris
ENSXCOG00000005500	urb1	98	45.464	ENSCAFG00020025987	-	99	40.877	Canis_lupus_dingo
ENSXCOG00000005500	urb1	98	44.719	ENSCAFG00020025994	-	99	40.669	Canis_lupus_dingo
ENSXCOG00000005500	urb1	99	41.102	ENSCHIG00000015645	URB1	99	41.102	Capra_hircus
ENSXCOG00000005500	urb1	99	40.713	ENSTSYG00000013286	URB1	99	40.713	Carlito_syrichta
ENSXCOG00000005500	urb1	96	44.934	ENSCAPG00000015589	URB1	99	40.386	Cavia_aperea
ENSXCOG00000005500	urb1	98	45.384	ENSCPOG00000006748	URB1	99	41.700	Cavia_porcellus
ENSXCOG00000005500	urb1	99	41.442	ENSCCAG00000021299	URB1	99	41.391	Cebus_capucinus
ENSXCOG00000005500	urb1	99	41.314	ENSCATG00000042630	URB1	99	41.277	Cercocebus_atys
ENSXCOG00000005500	urb1	98	47.619	ENSCLAG00000005262	URB1	94	47.619	Chinchilla_lanigera
ENSXCOG00000005500	urb1	99	46.023	ENSCSAG00000009584	URB1	97	44.388	Chlorocebus_sabaeus
ENSXCOG00000005500	urb1	98	48.281	ENSCPBG00000006454	URB1	99	43.459	Chrysemys_picta_bellii
ENSXCOG00000005500	urb1	96	45.971	ENSCANG00000031088	URB1	99	41.233	Colobus_angolensis_palliatus
ENSXCOG00000005500	urb1	97	45.573	ENSCGRG00001010616	Urb1	99	41.084	Cricetulus_griseus_chok1gshd
ENSXCOG00000005500	urb1	96	45.574	ENSCGRG00000015840	Urb1	99	41.402	Cricetulus_griseus_crigri
ENSXCOG00000005500	urb1	100	71.038	ENSCSEG00000012616	urb1	99	71.038	Cynoglossus_semilaevis
ENSXCOG00000005500	urb1	99	71.796	ENSCVAG00000009076	urb1	98	78.366	Cyprinodon_variegatus
ENSXCOG00000005500	urb1	99	59.459	ENSDARG00000060308	urb1	97	59.459	Danio_rerio
ENSXCOG00000005500	urb1	90	46.436	ENSDNOG00000015586	URB1	99	46.436	Dasypus_novemcinctus
ENSXCOG00000005500	urb1	98	41.967	ENSDORG00000006735	Urb1	99	41.744	Dipodomys_ordii
ENSXCOG00000005500	urb1	91	51.718	ENSETEG00000009080	URB1	90	51.718	Echinops_telfairi
ENSXCOG00000005500	urb1	97	44.979	ENSEASG00005007711	URB1	99	45.267	Equus_asinus_asinus
ENSXCOG00000005500	urb1	98	43.155	ENSECAG00000013206	URB1	99	41.282	Equus_caballus
ENSXCOG00000005500	urb1	97	57.550	ENSELUG00000020516	urb1	96	62.481	Esox_lucius
ENSXCOG00000005500	urb1	99	40.670	ENSFCAG00000002177	URB1	99	40.670	Felis_catus
ENSXCOG00000005500	urb1	97	42.397	ENSFALG00000004636	URB1	96	42.397	Ficedula_albicollis
ENSXCOG00000005500	urb1	99	42.005	ENSFDAG00000007288	URB1	95	41.852	Fukomys_damarensis
ENSXCOG00000005500	urb1	99	73.993	ENSFHEG00000000202	urb1	99	73.770	Fundulus_heteroclitus
ENSXCOG00000005500	urb1	92	55.263	ENSGMOG00000001838	urb1	90	56.190	Gadus_morhua
ENSXCOG00000005500	urb1	98	55.191	ENSGALG00000015887	URB1	96	55.191	Gallus_gallus
ENSXCOG00000005500	urb1	99	96.703	ENSGAFG00000020694	urb1	99	90.467	Gambusia_affinis
ENSXCOG00000005500	urb1	99	75.152	ENSGACG00000011703	urb1	99	75.152	Gasterosteus_aculeatus
ENSXCOG00000005500	urb1	98	48.076	ENSGAGG00000022544	URB1	99	43.310	Gopherus_agassizii
ENSXCOG00000005500	urb1	99	41.080	ENSGGOG00000000285	URB1	99	41.031	Gorilla_gorilla
ENSXCOG00000005500	urb1	98	68.418	ENSHBUG00000001904	urb1	100	65.590	Haplochromis_burtoni
ENSXCOG00000005500	urb1	96	45.053	ENSHGLG00000004907	URB1	99	40.960	Heterocephalus_glaber_female
ENSXCOG00000005500	urb1	96	45.520	ENSHGLG00100010749	URB1	99	41.305	Heterocephalus_glaber_male
ENSXCOG00000005500	urb1	80	62.945	ENSHCOG00000018683	urb1	99	65.926	Hippocampus_comes
ENSXCOG00000005500	urb1	99	58.696	ENSIPUG00000014721	urb1	98	58.696	Ictalurus_punctatus
ENSXCOG00000005500	urb1	96	46.001	ENSSTOG00000004539	URB1	99	40.921	Ictidomys_tridecemlineatus
ENSXCOG00000005500	urb1	93	75.000	ENSKMAG00000006001	urb1	99	74.759	Kryptolebias_marmoratus
ENSXCOG00000005500	urb1	98	65.176	ENSLBEG00000027208	urb1	99	62.680	Labrus_bergylta
ENSXCOG00000005500	urb1	97	55.556	ENSLACG00000017059	URB1	95	55.556	Latimeria_chalumnae
ENSXCOG00000005500	urb1	99	63.243	ENSLOCG00000009190	urb1	99	63.243	Lepisosteus_oculatus
ENSXCOG00000005500	urb1	98	46.011	ENSLAFG00000010407	URB1	99	41.514	Loxodonta_africana
ENSXCOG00000005500	urb1	99	41.138	ENSMFAG00000034391	URB1	97	41.102	Macaca_fascicularis
ENSXCOG00000005500	urb1	99	41.138	ENSMMUG00000010295	URB1	99	41.102	Macaca_mulatta
ENSXCOG00000005500	urb1	99	40.538	ENSMNEG00000032981	URB1	99	40.359	Macaca_nemestrina
ENSXCOG00000005500	urb1	99	41.376	ENSMLEG00000041435	URB1	99	41.339	Mandrillus_leucophaeus
ENSXCOG00000005500	urb1	99	67.635	ENSMAMG00000011238	urb1	99	63.665	Mastacembelus_armatus
ENSXCOG00000005500	urb1	100	65.992	ENSMZEG00005011862	urb1	100	66.038	Maylandia_zebra
ENSXCOG00000005500	urb1	97	60.417	ENSMGAG00000014512	URB1	96	60.417	Meleagris_gallopavo
ENSXCOG00000005500	urb1	91	52.194	ENSMAUG00000010516	Urb1	99	51.627	Mesocricetus_auratus
ENSXCOG00000005500	urb1	99	41.251	ENSMICG00000016424	URB1	99	41.156	Microcebus_murinus
ENSXCOG00000005500	urb1	96	45.223	ENSMOCG00000012613	Urb1	99	40.757	Microtus_ochrogaster
ENSXCOG00000005500	urb1	96	45.511	ENSMODG00000021076	URB1	99	41.071	Monodelphis_domestica
ENSXCOG00000005500	urb1	99	71.939	ENSMALG00000017411	urb1	98	71.939	Monopterus_albus
ENSXCOG00000005500	urb1	99	41.285	MGP_CAROLIEiJ_G0020948	Urb1	99	41.285	Mus_caroli
ENSXCOG00000005500	urb1	99	41.161	ENSMUSG00000039929	Urb1	99	41.161	Mus_musculus
ENSXCOG00000005500	urb1	99	41.101	MGP_PahariEiJ_G0016653	Urb1	99	41.101	Mus_pahari
ENSXCOG00000005500	urb1	99	41.293	MGP_SPRETEiJ_G0021854	Urb1	99	41.293	Mus_spretus
ENSXCOG00000005500	urb1	98	45.412	ENSMPUG00000001123	URB1	99	41.001	Mustela_putorius_furo
ENSXCOG00000005500	urb1	99	40.618	ENSNGAG00000001905	Urb1	99	40.618	Nannospalax_galili
ENSXCOG00000005500	urb1	85	67.194	ENSNBRG00000001049	urb1	99	67.194	Neolamprologus_brichardi
ENSXCOG00000005500	urb1	98	40.170	ENSNLEG00000026872	URB1	99	39.938	Nomascus_leucogenys
ENSXCOG00000005500	urb1	92	55.970	ENSMEUG00000010828	URB1	95	40.936	Notamacropus_eugenii
ENSXCOG00000005500	urb1	97	44.249	ENSOPRG00000013482	URB1	99	39.770	Ochotona_princeps
ENSXCOG00000005500	urb1	99	41.249	ENSODEG00000002587	URB1	99	41.249	Octodon_degus
ENSXCOG00000005500	urb1	99	68.522	ENSONIG00000005599	urb1	100	65.959	Oreochromis_niloticus
ENSXCOG00000005500	urb1	99	42.238	ENSOCUG00000009381	URB1	98	42.238	Oryctolagus_cuniculus
ENSXCOG00000005500	urb1	99	66.719	ENSORLG00000003429	urb1	99	63.515	Oryzias_latipes
ENSXCOG00000005500	urb1	99	66.303	ENSORLG00020013785	urb1	99	63.209	Oryzias_latipes_hni
ENSXCOG00000005500	urb1	98	64.093	ENSORLG00015019421	urb1	99	64.093	Oryzias_latipes_hsok
ENSXCOG00000005500	urb1	80	69.855	ENSOMEG00000002094	urb1	99	69.855	Oryzias_melastigma
ENSXCOG00000005500	urb1	97	46.366	ENSOGAG00000017140	URB1	99	41.619	Otolemur_garnettii
ENSXCOG00000005500	urb1	99	38.945	ENSOARG00000013679	URB1	99	38.804	Ovis_aries
ENSXCOG00000005500	urb1	99	40.947	ENSPPAG00000003423	URB1	99	40.899	Pan_paniscus
ENSXCOG00000005500	urb1	99	40.873	ENSPPRG00000023131	URB1	99	40.873	Panthera_pardus
ENSXCOG00000005500	urb1	87	45.276	ENSPTIG00000016125	URB1	89	45.199	Panthera_tigris_altaica
ENSXCOG00000005500	urb1	99	40.859	ENSPTRG00000013852	URB1	99	40.811	Pan_troglodytes
ENSXCOG00000005500	urb1	99	41.332	ENSPANG00000021964	URB1	99	41.295	Papio_anubis
ENSXCOG00000005500	urb1	99	49.406	ENSPKIG00000003683	urb1	99	49.406	Paramormyrops_kingsleyae
ENSXCOG00000005500	urb1	98	44.812	ENSPEMG00000021205	Urb1	98	41.036	Peromyscus_maniculatus_bairdii
ENSXCOG00000005500	urb1	81	32.928	ENSPMAG00000009733	URB1	99	33.333	Petromyzon_marinus
ENSXCOG00000005500	urb1	97	45.549	ENSPCIG00000016350	URB1	99	41.350	Phascolarctos_cinereus
ENSXCOG00000005500	urb1	96	88.462	ENSPLAG00000004371	urb1	100	86.009	Poecilia_latipinna
ENSXCOG00000005500	urb1	99	88.987	ENSPMEG00000006634	urb1	100	86.933	Poecilia_mexicana
ENSXCOG00000005500	urb1	100	94.505	ENSPREG00000013453	urb1	97	94.505	Poecilia_reticulata
ENSXCOG00000005500	urb1	99	41.411	ENSPPYG00000011359	URB1	99	41.099	Pongo_abelii
ENSXCOG00000005500	urb1	99	37.232	ENSPCAG00000007430	URB1	99	37.232	Procavia_capensis
ENSXCOG00000005500	urb1	99	40.535	ENSPCOG00000022695	URB1	99	40.621	Propithecus_coquereli
ENSXCOG00000005500	urb1	97	44.508	ENSPVAG00000000889	URB1	99	40.379	Pteropus_vampyrus
ENSXCOG00000005500	urb1	100	64.024	ENSPNYG00000010589	urb1	100	64.069	Pundamilia_nyererei
ENSXCOG00000005500	urb1	99	63.243	ENSPNAG00000019324	urb1	98	63.243	Pygocentrus_nattereri
ENSXCOG00000005500	urb1	99	41.041	ENSRNOG00000002080	Urb1	99	41.104	Rattus_norvegicus
ENSXCOG00000005500	urb1	96	45.661	ENSRBIG00000033122	URB1	99	41.453	Rhinopithecus_bieti
ENSXCOG00000005500	urb1	96	45.736	ENSRROG00000040237	URB1	99	41.427	Rhinopithecus_roxellana
ENSXCOG00000005500	urb1	99	41.530	ENSSBOG00000027672	URB1	99	41.480	Saimiri_boliviensis_boliviensis
ENSXCOG00000005500	urb1	99	40.859	ENSSHAG00000005140	URB1	99	40.859	Sarcophilus_harrisii
ENSXCOG00000005500	urb1	89	54.748	ENSSFOG00015000339	urb1	99	51.757	Scleropages_formosus
ENSXCOG00000005500	urb1	98	68.238	ENSSMAG00000003782	urb1	100	65.170	Scophthalmus_maximus
ENSXCOG00000005500	urb1	99	70.857	ENSSDUG00000012313	urb1	99	68.405	Seriola_dumerili
ENSXCOG00000005500	urb1	100	78.689	ENSSLDG00000023179	urb1	99	78.689	Seriola_lalandi_dorsalis
ENSXCOG00000005500	urb1	97	46.595	ENSSPUG00000012447	URB1	99	42.238	Sphenodon_punctatus
ENSXCOG00000005500	urb1	99	69.921	ENSSPAG00000006325	urb1	99	68.064	Stegastes_partitus
ENSXCOG00000005500	urb1	99	53.073	ENSSSCG00000032024	URB1	97	53.073	Sus_scrofa
ENSXCOG00000005500	urb1	77	46.254	ENSTGUG00000013442	URB1	100	46.254	Taeniopygia_guttata
ENSXCOG00000005500	urb1	100	71.038	ENSTRUG00000009372	urb1	97	71.038	Takifugu_rubripes
ENSXCOG00000005500	urb1	97	63.412	ENSTNIG00000016277	urb1	99	59.385	Tetraodon_nigroviridis
ENSXCOG00000005500	urb1	70	46.386	ENSTBEG00000010044	URB1	65	46.667	Tupaia_belangeri
ENSXCOG00000005500	urb1	86	64.516	ENSTTRG00000007712	URB1	85	64.516	Tursiops_truncatus
ENSXCOG00000005500	urb1	97	45.689	ENSUAMG00000012231	URB1	99	41.422	Ursus_americanus
ENSXCOG00000005500	urb1	87	45.885	ENSUMAG00000017419	URB1	94	44.113	Ursus_maritimus
ENSXCOG00000005500	urb1	67	62.500	ENSVPAG00000001164	URB1	65	62.500	Vicugna_pacos
ENSXCOG00000005500	urb1	98	45.623	ENSVVUG00000000551	URB1	99	41.504	Vulpes_vulpes
ENSXCOG00000005500	urb1	99	41.890	ENSXETG00000009895	urb1	99	41.638	Xenopus_tropicalis
ENSXCOG00000005500	urb1	100	98.352	ENSXMAG00000007253	urb1	100	98.352	Xiphophorus_maculatus